UHGV-0069918

Genome information

Genome length 35,027 bps

CDS count 60

Completeness 100.00% (complete)

geNomad score 0.9825

Prediction confidence Confident

Genome information
Genome ID	UHGV-0069918
vOTU ID	vOTU-005717
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_132438
BioSample	SAMEA2737784
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9825
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	33.45
Jumbo phage	No

Genome content
Genome length	35,027 bps
GC content	56.23%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	60
CDS density	94.63%
Average CDS length	557.10 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0069918_2	UniRef90	UniRef90_A0A7M1RTM1	RNA polymerase sigma factor/ubiquitin-like protein	NA
UHGV-0069918_2	eggNOG-mapper	1378168.N510_03079	NA	NA
UHGV-0069918_5	PHROG	phrog_36767	NA	unknown function
UHGV-0069918_5	UniRef90	UniRef90_UPI00067E7E25	NA	NA
UHGV-0069918_6	UniRef90	UniRef90_A0A843IZ65	Sigma70_r4 domain-containing protein	NA
UHGV-0069918_6	Pfam	PF08281	Sigma-70, region 4	Sigma70_r4_2
UHGV-0069918_6	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0069918_6	Structural annotation	PF04545, MF_00245, TIGR02985, COG2739	NA	NA
UHGV-0069918_7	KOfam	K11062	entD; probable enterotoxin D	NA
UHGV-0069918_7	PHROG	phrog_1794	amidase	lysis
UHGV-0069918_7	UniRef90	UniRef90_A0A3D4VSU2	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0069918_7	eggNOG-mapper	411470.RUMGNA_02087	N-Acetylmuramoyl-L-alanine amidase	NA
UHGV-0069918_7	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0069918_7	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0069918_7	Structural annotation	PF01510, MF_04111, NF008758, COG5632	NA	NA
UHGV-0069918_8	PHROG	phrog_6918	holin	lysis
UHGV-0069918_8	UniRef90	UniRef90_A0A316QCY7	Holin	NA
UHGV-0069918_8	eggNOG-mapper	1297617.JPJD01000020_gene301	Bacteriophage holin of superfamily 6 (Holin_LLH)	NA
UHGV-0069918_8	Pfam	PF09682	Bacteriophage holin of superfamily 6 (Holin_LLH)	Phage_holin_6_1
UHGV-0069918_8	Structural annotation	PF09682, TIGR01673	NA	NA
UHGV-0069918_10	PHROG	phrog_937	hemolysin	other
UHGV-0069918_10	eggNOG-mapper	1519439.JPJG01000023_gene533	NA	NA
UHGV-0069918_11	KOfam	K20846	cgkA; kappa-carrageenase [EC:3.2.1.83]	NA
UHGV-0069918_11	PHROG	phrog_215	structural protein with Ig domain	head and packaging
UHGV-0069918_11	UniRef90	UniRef90_A0A1I1Z9R5	Calcineurin-like phosphoesterase	NA
UHGV-0069918_11	eggNOG-mapper	485916.Dtox_1961	PFAM Bacterial Ig-like domain (group 2)	NA
UHGV-0069918_11	Pfam	PF02368	Bacterial Ig-like domain (group 2)	Big_2
UHGV-0069918_11	COG	COG3210	Large exoprotein involved in heme utilization or adhesion	NA
UHGV-0069918_11	Structural annotation	PF02368, PF09423, MF_00575, NF003743, NF005261, COG5492	NA	NA
UHGV-0069918_12	eggNOG-mapper	357276.EL88_03475	Leucine-rich repeat (LRR) protein	NA
UHGV-0069918_12	COG	COG4886	Leucine-rich repeat (LRR) protein	NA
UHGV-0069918_12	Structural annotation	PF10651, NF033814	NA	NA
UHGV-0069918_13	Structural annotation	PF18614, MF_00085, NF003082, COG0361	NA	NA
UHGV-0069918_14	PHROG	phrog_26795	NA	unknown function
UHGV-0069918_14	eggNOG-mapper	1195236.CTER_5102	NA	NA
UHGV-0069918_14	Structural annotation	PF14594, NF033848, COG4379	NA	NA
UHGV-0069918_15	UniRef90	UniRef90_A0A3D0W045	Fibronectin type-III domain-containing protein	NA
UHGV-0069918_15	eggNOG-mapper	1195236.CTER_5103	NA	NA
UHGV-0069918_15	Structural annotation	PF02010, PF06848, PF19266, MF_04116, NF033679, NF032891, TIGR01633, TIGR04488, COG3401, COG3499	NA	NA
UHGV-0069918_16	PHROG	phrog_8462	tail length tape measure protein	tail
UHGV-0069918_16	UniRef90	UniRef90_UPI00098F054B	phage tail protein	NA
UHGV-0069918_16	eggNOG-mapper	509191.AEDB02000020_gene3249	tail tape measure protein, TP901	NA
UHGV-0069918_16	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0069918_16	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0069918_16	Structural annotation	TIGR01760, COG5280	NA	NA
UHGV-0069918_17	Structural annotation	PF11836	NA	NA
UHGV-0069918_18	PHROG	phrog_88	major tail protein	tail
UHGV-0069918_18	UniRef90	UniRef90_S0FUN2	Phage major tail protein, phi13 family	NA
UHGV-0069918_18	eggNOG-mapper	1195236.CTER_5106	phage major tail protein, phi13 family	NA
UHGV-0069918_18	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0069918_18	COG	COG5492	NA	NA
UHGV-0069918_18	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0069918_19	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0069918_19	Structural annotation	TIGR01725	NA	NA
UHGV-0069918_20	eggNOG-mapper	1487921.DP68_11350	NA	NA
UHGV-0069918_20	Structural annotation	PF05657	NA	NA
UHGV-0069918_21	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-0069918_21	UniRef90	UniRef90_A0A1F8UNT5	Phage head-tail adapter protein	NA
UHGV-0069918_21	eggNOG-mapper	1094508.Tsac_2422	Phage head-tail joining protein	NA
UHGV-0069918_21	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0069918_21	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0069918_21	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0069918_21	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0069918_22	PHROG	phrog_5223	neck protein	connector
UHGV-0069918_22	UniRef90	UniRef90_E6MGY0	Putative phage DNA packaging protein	NA
UHGV-0069918_22	eggNOG-mapper	887929.HMP0721_1264	NA	NA
UHGV-0069918_23	PHROG	phrog_10	major head protein	head and packaging
UHGV-0069918_23	UniRef90	UniRef90_UPI00189AE5FE	phage major capsid protein	NA
UHGV-0069918_23	eggNOG-mapper	1280689.AUJC01000011_gene1521	Phage major capsid protein, HK97 family	NA
UHGV-0069918_23	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0069918_23	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0069918_23	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0069918_23	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0069918_24	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0069918_24	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0069918_24	UniRef90	UniRef90_UPI0018979DC8	Clp protease ClpP	NA
UHGV-0069918_24	eggNOG-mapper	1280689.AUJC01000011_gene1520	Belongs to the peptidase S14 family	NA
UHGV-0069918_24	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0069918_24	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0069918_24	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA
UHGV-0069918_25	PHROG	phrog_12	portal protein	head and packaging
UHGV-0069918_25	UniRef90	UniRef90_UPI001898FCCE	phage portal protein	NA
UHGV-0069918_25	eggNOG-mapper	626523.GCWU000342_01027	Portal protein	NA
UHGV-0069918_25	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0069918_25	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0069918_25	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0069918_26	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0069918_26	UniRef90	UniRef90_UPI001D07C789	terminase large subunit	NA
UHGV-0069918_26	eggNOG-mapper	1203606.HMPREF1526_00981	Terminase	NA
UHGV-0069918_26	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0069918_26	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0069918_26	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0069918_26	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0069918_27	PHROG	phrog_1066	NA	unknown function
UHGV-0069918_27	eggNOG-mapper	1341151.ASZU01000004_gene265	NA	NA
UHGV-0069918_27	Structural annotation	PF05119, TIGR01558	NA	NA
UHGV-0069918_28	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0069918_28	UniRef90	UniRef90_A0A174XSZ8	Prophage LambdaBa04, GP54	NA
UHGV-0069918_28	eggNOG-mapper	1235793.C809_01915	HNH endonuclease	NA
UHGV-0069918_28	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0069918_28	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0069918_29	eggNOG-mapper	1297617.JPJD01000059_gene2640	NA	NA
UHGV-0069918_29	Structural annotation	PF06530, TIGR01636	NA	NA
UHGV-0069918_30	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0069918_30	eggNOG-mapper	537013.CLOSTMETH_02141	NA	NA
UHGV-0069918_30	Structural annotation	PF21578, MF_00360	NA	NA
UHGV-0069918_37	PHROG	phrog_190	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0069918_37	UniRef90	UniRef90_UPI0006C2AC63	NA	NA
UHGV-0069918_37	eggNOG-mapper	693746.OBV_25250	NA	NA
UHGV-0069918_37	Pfam	PF06356	NA	DUF1064
UHGV-0069918_37	Structural annotation	PF06356	NA	NA
UHGV-0069918_40	PHROG	phrog_31029	NA	unknown function
UHGV-0069918_42	PHROG	phrog_3136	NA	unknown function
UHGV-0069918_42	UniRef90	UniRef90_A0A843H9M8	ASCH domain-containing protein	NA
UHGV-0069918_42	COG	COG4933	Predicted transcriptional regulator, contains an HTH and PUA-like domains	NA
UHGV-0069918_42	Structural annotation	PF04266, MF_00684, NF008917, COG4933	NA	NA
UHGV-0069918_43	PHROG	phrog_954	DNA methyltransferase	other
UHGV-0069918_43	UniRef90	UniRef90_A0A810Q0N4	Methyltransferase	NA
UHGV-0069918_43	eggNOG-mapper	1280698.AUJS01000007_gene1028	Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA	NA
UHGV-0069918_43	PADLOC	MTase_II_00074	Type II methyltransferase	RM
UHGV-0069918_43	Pfam	PF08241	Methyltransferase domain	Methyltransf_11
UHGV-0069918_43	COG	COG1092	23S rRNA G2069 N7-methylase RlmK or C1962 C5-methylase RlmI	NA
UHGV-0069918_43	Structural annotation	PF05148, MF_03044, NF033398, COG1041	NA	NA
UHGV-0069918_44	Pfam	PF04448	NA	DUF551
UHGV-0069918_44	Structural annotation	NF041588	NA	NA
UHGV-0069918_46	PHROG	phrog_9298	radical SAM domain protein	other
UHGV-0069918_46	UniRef90	UniRef90_A0A841L4D7	Radical SAM superfamily enzyme YgiQ (UPF0313 family)	NA
UHGV-0069918_46	eggNOG-mapper	742738.HMPREF9460_03770	radical SAM domain protein	NA
UHGV-0069918_46	COG	COG1032	Radical SAM superfamily enzyme YgiQ, UPF0313 family	NA
UHGV-0069918_46	Structural annotation	PF04055, MF_01864, TIGR04072, COG0621	NA	NA
UHGV-0069918_49	Structural annotation	PF05082	NA	NA
UHGV-0069918_50	COG	COG4886	Leucine-rich repeat (LRR) protein	NA
UHGV-0069918_51	UniRef90	UniRef90_A0A098GES5	Putative phage associated protein	NA
UHGV-0069918_51	Structural annotation	PF01423, MF_00257, NF001963, COG1958	NA	NA
UHGV-0069918_56	UniRef90	UniRef90_UPI0018C81604	helix-turn-helix domain-containing protein	NA
UHGV-0069918_56	eggNOG-mapper	484770.UFO1_1664	NA	NA
UHGV-0069918_56	Structural annotation	PF21291, NF041951, COG1476	NA	NA
UHGV-0069918_57	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0069918_57	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0069918_57	UniRef90	UniRef90_A0A7X5KNQ8	Helix-turn-helix transcriptional regulator	NA
UHGV-0069918_57	eggNOG-mapper	1292035.H476_1037	sequence-specific DNA binding	NA
UHGV-0069918_57	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-0069918_57	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0069918_58	eggNOG-mapper	1236902.ANAS01000009_gene2676	TM2 domain	NA
UHGV-0069918_58	COG	COG2314	NA	NA
UHGV-0069918_59	UniRef90	UniRef90_A7VNR4	HTH cro/C1-type domain-containing protein	NA
UHGV-0069918_59	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0069918_59	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0069918_59	Structural annotation	PF01381, MF_02017, TIGR03070, COG3655	NA	NA
UHGV-0069918_60	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0069918_60	PHROG	phrog_95	integrase	integration and excision
UHGV-0069918_60	UniRef90	UniRef90_UPI0019572FB3	recombinase family protein	NA
UHGV-0069918_60	eggNOG-mapper	1235835.C814_00825	Resolvase, N terminal domain	NA
UHGV-0069918_60	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0069918_60	Pfam	PF07508	Recombinase	Recombinase
UHGV-0069918_60	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0069918_60	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0069918_60	Structural annotation	PF07508, PF00239, NF041201, COG1961	NA	NA