UHGV-0069923

Genome information

Genome length 36,751 bps

CDS count 52

Completeness 85.14% (medium-quality)

geNomad score 0.9728

Prediction confidence Confident

Genome information
Genome ID	UHGV-0069923
vOTU ID	vOTU-041389
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_113179
BioSample	NA
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	85.14% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	6
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9728
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	12.73
Jumbo phage	No

Genome content
Genome length	36,751 bps
GC content	49.64%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	52
CDS density	88.83%
Average CDS length	631.90 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0069923_3	PHROG	phrog_24083	NA	unknown function
UHGV-0069923_3	eggNOG-mapper	871968.DESME_08840	NA	NA
UHGV-0069923_3	Pfam	PF06414	Zeta toxin	Zeta_toxin
UHGV-0069923_4	KOfam	K14059	int; integrase	NA
UHGV-0069923_4	PHROG	phrog_1	integrase	integration and excision
UHGV-0069923_4	UniRef90	UniRef90_UPI00195DFC45	site-specific integrase	NA
UHGV-0069923_4	eggNOG-mapper	748224.HMPREF9436_01375	Phage integrase family	NA
UHGV-0069923_4	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0069923_4	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0069923_4	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0069923_6	PHROG	phrog_1758	acetyltransferase	other
UHGV-0069923_6	UniRef90	UniRef90_A0A1Y4M8L7	N-acetyltransferase	NA
UHGV-0069923_6	eggNOG-mapper	642492.Clole_1882	acetyltransferase	NA
UHGV-0069923_6	COG	COG0454	N-acetyltransferase, GNAT superfamily (includes histone acetyltransferase HPA2)	NA
UHGV-0069923_6	Structural annotation	PF13673, MF_02210, NF000360, COG2153	NA	NA
UHGV-0069923_7	eggNOG-mapper	1231377.C426_0586	Peptidase S24-like	NA
UHGV-0069923_7	COG	COG2932	Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains	NA
UHGV-0069923_8	KOfam	K02238	comEC; competence protein ComEC	NA
UHGV-0069923_8	PHROG	phrog_14556	NA	unknown function
UHGV-0069923_8	UniRef90	UniRef90_UPI000A5D3AF4	MBL fold metallo-hydrolase	NA
UHGV-0069923_8	eggNOG-mapper	1378168.N510_02494	Competence protein ComEC	NA
UHGV-0069923_8	Pfam	PF00753	Metallo-beta-lactamase superfamily	Lactamase_B
UHGV-0069923_8	COG	COG2333	DNA uptake channel protein ComEC C-terminal domain, metallo-beta-lactamase superfamily	NA
UHGV-0069923_10	PHROG	phrog_87	metallo-protease	other
UHGV-0069923_10	UniRef90	UniRef90_UPI001966F635	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0069923_10	eggNOG-mapper	717606.PaecuDRAFT_3093	IrrE N-terminal-like domain	NA
UHGV-0069923_10	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0069923_10	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0069923_10	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0069923_11	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0069923_11	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0069923_11	UniRef90	UniRef90_A0A2V2F7D3	HTH cro/C1-type domain-containing protein	NA
UHGV-0069923_11	eggNOG-mapper	1297617.JPJD01000059_gene2644	addiction module antidote protein HigA	NA
UHGV-0069923_11	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0069923_11	COG	COG3093	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	NA
UHGV-0069923_12	UniRef90	UniRef90_UPI001956DCC9	helix-turn-helix transcriptional regulator	NA
UHGV-0069923_12	Structural annotation	PF13560, NF041951, COG1396	NA	NA
UHGV-0069923_13	PHROG	phrog_6401	DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0069923_13	UniRef90	UniRef90_K9YFZ3	DNA binding domain protein, excisionase family	NA
UHGV-0069923_13	eggNOG-mapper	1449080.JQMV01000006_gene2254	Helix-turn-helix domain	NA
UHGV-0069923_13	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0069923_13	NCBIFam	TIGR01764.1	excisionase family DNA-binding protein	NA
UHGV-0069923_17	eggNOG-mapper	1235802.C823_04724	NA	NA
UHGV-0069923_19	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0069923_19	UniRef90	UniRef90_UPI001966DA32	ERF family protein	NA
UHGV-0069923_19	eggNOG-mapper	1484479.DI14_04910	ERF superfamily	NA
UHGV-0069923_19	Pfam	PF04404	ERF superfamily	ERF
UHGV-0069923_21	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0069923_21	UniRef90	UniRef90_A0A8D9PDS2	NinB protein	NA
UHGV-0069923_21	eggNOG-mapper	445972.ANACOL_01825	NA	NA
UHGV-0069923_21	Pfam	PF05772	NinB protein	NinB
UHGV-0069923_21	Structural annotation	PF05772, NF007281	NA	NA
UHGV-0069923_22	PHROG	phrog_7566	NA	unknown function
UHGV-0069923_22	eggNOG-mapper	693746.OBV_25470	NA	NA
UHGV-0069923_23	Structural annotation	PF19157	NA	NA
UHGV-0069923_24	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0069923_24	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0069923_24	UniRef90	UniRef90_A0A316PHP0	Single-stranded DNA-binding protein	NA
UHGV-0069923_24	eggNOG-mapper	665956.HMPREF1032_00430	Single-stranded DNA-binding protein	NA
UHGV-0069923_24	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0069923_24	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0069923_24	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0069923_24	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0069923_24	Structural annotation	PF00436, MF_00984, NF005242, COG0629	NA	NA
UHGV-0069923_25	PHROG	phrog_2514	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0069923_25	UniRef90	UniRef90_A0A174WT25	Replication initiator A domain-containing protein	NA
UHGV-0069923_25	eggNOG-mapper	665956.HMPREF1032_02617	Phage replisome organizer, N-terminal domain protein	NA
UHGV-0069923_25	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0069923_25	Structural annotation	PF10771, MF_01177, TIGR01714, COG5529	NA	NA
UHGV-0069923_26	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0069923_26	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0069923_26	UniRef90	UniRef90_A0A0W7TNB4	DNA helicase	NA
UHGV-0069923_26	eggNOG-mapper	665956.HMPREF1032_02618	Participates in initiation and elongation during chromosome replication	NA
UHGV-0069923_26	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0069923_26	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0069923_26	COG	COG0305	Replicative DNA helicase	NA
UHGV-0069923_26	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0069923_27	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0069923_27	PHROG	phrog_34	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0069923_27	UniRef90	UniRef90_UPI0006D84EB7	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0069923_27	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0069923_27	Structural annotation	PF19595, NF007305, COG4570	NA	NA
UHGV-0069923_31	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0069923_31	PHROG	phrog_29443	NA	unknown function
UHGV-0069923_31	UniRef90	UniRef90_H1CIV2	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0069923_31	eggNOG-mapper	1121334.KB911073_gene1852	Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family	NA
UHGV-0069923_31	PADLOC	MTase_II_00020	Type II methyltransferase	RM
UHGV-0069923_31	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0069923_31	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0069923_31	Structural annotation	PF00145, MF_00786, TIGR00675, COG0270	NA	NA
UHGV-0069923_36	PHROG	phrog_10714	NA	unknown function
UHGV-0069923_36	UniRef90	UniRef90_UPI001C3A10B1	Zinc ribbon domain-containing protein	NA
UHGV-0069923_36	eggNOG-mapper	1226322.HMPREF1545_00023	NA	NA
UHGV-0069923_39	Pfam	PF04448	NA	DUF551
UHGV-0069923_41	PHROG	phrog_19458	primase	DNA, RNA and nucleotide metabolism
UHGV-0069923_41	UniRef90	UniRef90_A0A7X5DCK0	LPD15 domain-containing protein	NA
UHGV-0069923_41	eggNOG-mapper	657322.FPR_26770	NA	NA
UHGV-0069923_41	COG	COG4227	Antirestriction protein ArdC	NA
UHGV-0069923_42	UniRef90	UniRef90_A0A2K4ZGQ9	DarA_C domain-containing protein	NA
UHGV-0069923_46	PHROG	phrog_2412	NA	unknown function
UHGV-0069923_46	eggNOG-mapper	1122981.AUME01000026_gene531	NA	NA
UHGV-0069923_48	PHROG	phrog_1233	NA	unknown function
UHGV-0069923_48	eggNOG-mapper	1232443.BAIA02000078_gene33	NA	NA
UHGV-0069923_48	Structural annotation	PF13058	NA	NA
UHGV-0069923_49	KOfam	K21523	gp17; terminase, large subunit [EC:3.1.-.-]	NA
UHGV-0069923_49	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0069923_49	UniRef90	UniRef90_UPI001F401ABC	terminase family protein	NA
UHGV-0069923_49	eggNOG-mapper	316274.Haur_1384	NA	NA
UHGV-0069923_49	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0069923_49	COG	COG4373	Mu-like prophage FluMu protein gp28	NA
UHGV-0069923_49	Structural annotation	PF03354, PF17289, MF_04146, TIGR01547, COG4373	NA	NA
UHGV-0069923_50	PHROG	phrog_156	portal protein	head and packaging
UHGV-0069923_50	eggNOG-mapper	693746.OBV_23930	NA	NA
UHGV-0069923_50	Structural annotation	PF12236, MF_04120, TIGR01538, COG5518	NA	NA