UHGV-0069924

Genome information

Genome length 30,604 bps

CDS count 42

Completeness 76.76% (medium-quality)

geNomad score 0.9681

Prediction confidence Confident

Genome information
Genome ID	UHGV-0069924
vOTU ID	vOTU-018258
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_113182
BioSample	NA
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	76.76% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	20
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9681
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	54.8
Jumbo phage	No

Genome content
Genome length	30,604 bps
GC content	43.88%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	42
CDS density	94.59%
Average CDS length	693.57 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0069924_3	Structural annotation	PF05263, MF_00245, TIGR01636	NA	NA
UHGV-0069924_4	PHROG	phrog_509	terminase small subunit	head and packaging
UHGV-0069924_4	UniRef90	UniRef90_R5J299	Phage terminase small subunit	NA
UHGV-0069924_4	eggNOG-mapper	552396.HMPREF0863_04210	DNA packaging	NA
UHGV-0069924_4	Pfam	PF06056	Putative ATPase subunit of terminase (gpP-like)	Terminase_5
UHGV-0069924_4	NCBIFam	NF040601.1	phage terminase small subunit	NA
UHGV-0069924_4	COG	COG5484	NA	NA
UHGV-0069924_4	Structural annotation	NF040601, COG5484	NA	NA
UHGV-0069924_5	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0069924_5	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0069924_5	UniRef90	UniRef90_A8RC01	Phage terminase, large subunit, PBSX family	NA
UHGV-0069924_5	eggNOG-mapper	428127.EUBDOL_01229	Phage terminase, large subunit, PBSX family	NA
UHGV-0069924_5	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0069924_5	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0069924_5	COG	COG1783	Phage terminase large subunit	NA
UHGV-0069924_5	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0069924_6	PHROG	phrog_533	portal protein	head and packaging
UHGV-0069924_6	UniRef90	UniRef90_A8RC00	Phage minor capsid protein	NA
UHGV-0069924_6	eggNOG-mapper	428127.EUBDOL_01228	phage minor capsid protein	NA
UHGV-0069924_6	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0069924_6	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0069924_7	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0069924_7	UniRef90	UniRef90_UPI001CD92893	phage minor capsid protein	NA
UHGV-0069924_7	eggNOG-mapper	428127.EUBDOL_01227	Phage minor capsid protein 2	NA
UHGV-0069924_7	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0069924_7	COG	COG2369	NA	NA
UHGV-0069924_7	Structural annotation	PF06152	NA	NA
UHGV-0069924_8	Structural annotation	PF11344	NA	NA
UHGV-0069924_9	PHROG	phrog_3675	NA	unknown function
UHGV-0069924_9	UniRef90	UniRef90_A0A3N0I0X7	Dihydrolipoyl dehydrogenase	NA
UHGV-0069924_9	eggNOG-mapper	1235799.C818_04221	YjcQ protein	NA
UHGV-0069924_9	Pfam	PF09639	YjcQ protein	YjcQ
UHGV-0069924_9	Structural annotation	PF09639, TIGR04176, COG2345	NA	NA
UHGV-0069924_10	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-0069924_10	UniRef90	UniRef90_UPI00156F0E9C	NA	NA
UHGV-0069924_10	eggNOG-mapper	397290.C810_05229	NA	NA
UHGV-0069924_10	Structural annotation	PF14359	NA	NA
UHGV-0069924_11	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0069924_11	UniRef90	UniRef90_UPI000693D290	phage scaffolding protein	NA
UHGV-0069924_11	eggNOG-mapper	1232449.BAHV02000008_gene631	NA	NA
UHGV-0069924_11	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0069924_11	Structural annotation	PF06810	NA	NA
UHGV-0069924_12	PHROG	phrog_283	major head protein	head and packaging
UHGV-0069924_12	UniRef90	UniRef90_UPI001896DBE2	P22 coat protein	NA
UHGV-0069924_12	eggNOG-mapper	428127.EUBDOL_01223	P22 coat protein - gene protein 5	NA
UHGV-0069924_12	Pfam	PF11651	P22 coat protein - gene protein 5	P22_CoatProtein
UHGV-0069924_12	Structural annotation	PF11651, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0069924_13	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0069924_13	eggNOG-mapper	536233.CLO_0887	NA	NA
UHGV-0069924_14	Pfam	PF20536	NA	DUF6751
UHGV-0069924_14	Structural annotation	PF20536, COG1853	NA	NA
UHGV-0069924_15	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0069924_15	UniRef90	UniRef90_UPI0003FD237D	minor capsid protein	NA
UHGV-0069924_15	eggNOG-mapper	428127.EUBDOL_01220	NA	NA
UHGV-0069924_15	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0069924_15	Structural annotation	PF11114	NA	NA
UHGV-0069924_16	PHROG	phrog_3266	tail completion	connector
UHGV-0069924_16	UniRef90	UniRef90_A0A355UZ60	Chloramphenicol resistance protein	NA
UHGV-0069924_16	eggNOG-mapper	428127.EUBDOL_01219	NA	NA
UHGV-0069924_16	Structural annotation	PF12691	NA	NA
UHGV-0069924_17	PHROG	phrog_3099	NA	unknown function
UHGV-0069924_17	eggNOG-mapper	428127.EUBDOL_01218	NA	NA
UHGV-0069924_17	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0069924_18	PHROG	phrog_4450	NA	unknown function
UHGV-0069924_18	UniRef90	UniRef90_UPI001F469033	AP endonuclease	NA
UHGV-0069924_18	eggNOG-mapper	641112.ACOK01000073_gene2902	NA	NA
UHGV-0069924_18	Pfam	PF20378	NA	DUF6673
UHGV-0069924_18	Structural annotation	PF20378	NA	NA
UHGV-0069924_19	PHROG	phrog_706	NA	unknown function
UHGV-0069924_19	UniRef90	UniRef90_UPI000E4B269F	Gp15 family bacteriophage protein	NA
UHGV-0069924_19	eggNOG-mapper	428127.EUBDOL_01216	Bacteriophage Gp15 protein	NA
UHGV-0069924_19	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0069924_19	Structural annotation	PF06854	NA	NA
UHGV-0069924_20	PHROG	phrog_1533	tail length tape measure protein	tail
UHGV-0069924_20	UniRef90	UniRef90_A8RBY2	Phage tail tape measure protein, TP901 family	NA
UHGV-0069924_20	eggNOG-mapper	428127.EUBDOL_01214	Phage tail tape measure protein, TP901 family	NA
UHGV-0069924_20	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0069924_20	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0069924_20	COG	COG3883	NA	NA
UHGV-0069924_21	UniRef90	UniRef90_UPI001C0E8CA8	phage tail family protein	NA
UHGV-0069924_21	eggNOG-mapper	1280689.AUJC01000007_gene3307	phage tail	NA
UHGV-0069924_21	COG	COG4722	Phage-related protein YomH	NA
UHGV-0069924_21	Structural annotation	PF20753, PF20195, TIGR01633, COG4722	NA	NA
UHGV-0069924_22	PHROG	phrog_5555	tail protein	tail
UHGV-0069924_22	UniRef90	UniRef90_UPI0009DD953D	phage tail protein	NA
UHGV-0069924_22	eggNOG-mapper	999413.HMPREF1094_00205	NA	NA
UHGV-0069924_22	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0069924_22	COG	COG4926	Phage-related protein	NA
UHGV-0069924_22	Structural annotation	PF06605, PF18994, TIGR01665, COG4926	NA	NA
UHGV-0069924_23	PHROG	phrog_3267	tail protein	tail
UHGV-0069924_23	UniRef90	UniRef90_R9C033	YkqB	NA
UHGV-0069924_23	eggNOG-mapper	207656.S6BUV4_9CAUD	NA	NA
UHGV-0069924_23	Structural annotation	PF02010, MF_04116, NF010681, COG1361	NA	NA
UHGV-0069924_24	PHROG	phrog_2929	tail fiber protein	tail
UHGV-0069924_24	Structural annotation	PF04862, NF033675, COG4935	NA	NA
UHGV-0069924_25	PHROG	phrog_372	tail protein	tail
UHGV-0069924_25	UniRef90	UniRef90_A0A6N8U5G4	Fibronectin type-III domain-containing protein	NA
UHGV-0069924_25	eggNOG-mapper	1123075.AUDP01000020_gene1530	Transposase	NA
UHGV-0069924_25	COG	COG4372	NA	NA
UHGV-0069924_27	PHROG	phrog_854	glucosyltransferase	moron, auxiliary metabolic gene and host takeover
UHGV-0069924_27	eggNOG-mapper	326424.FRAAL2589	ADP-glyceromanno-heptose 6-epimerase activity	NA
UHGV-0069924_27	COG	COG3306	Glycosyltransferase involved in LPS biosynthesis, GR25 family	NA
UHGV-0069924_27	Structural annotation	PF03071, NF038299, COG3306	NA	NA
UHGV-0069924_28	PHROG	phrog_263	holin	lysis
UHGV-0069924_28	UniRef90	UniRef90_A0A6N2XEK9	Phage lysis protein, holin	NA
UHGV-0069924_28	eggNOG-mapper	1121344.JHZO01000003_gene952	SPP1 phage holin	NA
UHGV-0069924_28	Pfam	PF04688	SPP1 phage holin	Holin_SPP1
UHGV-0069924_28	NCBIFam	TIGR01592.1	phage holin	NA
UHGV-0069924_29	PHROG	phrog_4105	NA	unknown function
UHGV-0069924_29	eggNOG-mapper	1235798.C817_03465	NA	NA
UHGV-0069924_30	PHROG	phrog_11037	NA	unknown function
UHGV-0069924_30	UniRef90	UniRef90_R6T0A5	SH3 domain protein	NA
UHGV-0069924_30	eggNOG-mapper	428127.EUBDOL_01569	NA	NA
UHGV-0069924_30	Pfam	PF08460	Bacterial SH3 domain	SH3_5
UHGV-0069924_30	Structural annotation	PF08460, PF01551, NF040883, NF033202, COG0739, COG4991	NA	NA
UHGV-0069924_31	KOfam	K14059	int; integrase	NA
UHGV-0069924_31	PHROG	phrog_1	integrase	integration and excision
UHGV-0069924_31	UniRef90	UniRef90_UPI0018AA7879	tyrosine-type recombinase/integrase	NA
UHGV-0069924_31	eggNOG-mapper	908340.HMPREF9406_2610	Belongs to the 'phage' integrase family	NA
UHGV-0069924_31	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0069924_31	Pfam	PF09851	Short C-terminal domain	SHOCT
UHGV-0069924_31	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0069924_31	Structural annotation	PF00589, PF13102, MF_01807, TIGR02224, COG4973	NA	NA
UHGV-0069924_32	PHROG	phrog_4980	superinfection exclusion	moron, auxiliary metabolic gene and host takeover
UHGV-0069924_32	eggNOG-mapper	717605.Theco_0737	Host cell surface-exposed lipoprotein	NA
UHGV-0069924_32	Pfam	PF07553	Host cell surface-exposed lipoprotein	Lipoprotein_Ltp
UHGV-0069924_32	COG	COG3064	Membrane protein TolA involved in colicin uptake	NA
UHGV-0069924_32	Structural annotation	MF_01114, NF001062, COG2137	NA	NA
UHGV-0069924_33	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0069924_33	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0069924_33	UniRef90	UniRef90_R7G6H5	Peptidase_S24 domain-containing protein	NA
UHGV-0069924_33	eggNOG-mapper	999413.HMPREF1094_00245	Peptidase S24-like	NA
UHGV-0069924_33	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0069924_33	COG	COG2932	Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains	NA
UHGV-0069924_33	Structural annotation	PF00717, PF01381, MF_00015, NF041951, NF007621, COG2932	NA	NA
UHGV-0069924_34	UniRef90	UniRef90_R7G8B8	HTH cro/C1-type domain-containing protein	NA
UHGV-0069924_34	eggNOG-mapper	1347392.CCEZ01000005_gene1206	NA	NA
UHGV-0069924_34	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0069924_34	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0069924_36	UniRef90	UniRef90_UPI001C7136B9	NA	NA
UHGV-0069924_36	Pfam	PF13031	NA	DUF3892
UHGV-0069924_36	Structural annotation	PF13031	NA	NA
UHGV-0069924_40	PHROG	phrog_6631	NA	unknown function
UHGV-0069924_40	UniRef90	UniRef90_A0A417JW62	3D domain-containing protein	NA
UHGV-0069924_40	eggNOG-mapper	658088.HMPREF0987_02675	peptidase	NA
UHGV-0069924_40	Pfam	PF06725	3D domain	3D
UHGV-0069924_40	COG	COG3584	3D (Asp-Asp-Asp) domain, usually in lytic transglycosylases	NA
UHGV-0069924_40	Structural annotation	PF06725, COG3584	NA	NA