UHGV-0069937

Genome information

Genome length 36,460 bps

CDS count 63

Completeness 82.90% (medium-quality)

geNomad score 0.9711

Prediction confidence Confident

Genome information
Genome ID	UHGV-0069937
vOTU ID	vOTU-041558
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_134208
BioSample	SAMEA2737679
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	82.90% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	21
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9711
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	65.52
Jumbo phage	No

Genome content
Genome length	36,460 bps
GC content	31.64%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	63
CDS density	93.60%
Average CDS length	546.71 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0069937_1	KOfam	K14059	int; integrase	NA
UHGV-0069937_1	PHROG	phrog_1	integrase	integration and excision
UHGV-0069937_1	UniRef90	UniRef90_UPI000E4C34F1	site-specific integrase	NA
UHGV-0069937_1	eggNOG-mapper	1423743.JCM14108_3128	Belongs to the 'phage' integrase family	NA
UHGV-0069937_1	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0069937_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0069937_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0069937_1	Structural annotation	PF00589, PF14659, PF14657, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-0069937_4	Structural annotation	PF00227, MF_02113_A, TIGR03634, COG0638	NA	NA
UHGV-0069937_5	UniRef90	UniRef90_A0A6G7Z9A3	SAP domain-containing protein	NA
UHGV-0069937_5	eggNOG-mapper	1175629.AJTG01000007_gene1035	NA	NA
UHGV-0069937_7	PHROG	phrog_87	metallo-protease	other
UHGV-0069937_7	UniRef90	UniRef90_UPI0018AA4A01	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0069937_7	eggNOG-mapper	1211844.CBLM010000023_gene993	IrrE N-terminal-like domain	NA
UHGV-0069937_7	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0069937_7	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0069937_8	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0069937_8	UniRef90	UniRef90_UPI0018AA4539	helix-turn-helix domain-containing protein	NA
UHGV-0069937_8	eggNOG-mapper	350688.Clos_1286	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0069937_8	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0069937_8	COG	COG3655	DNA-binding transcriptional regulator, XRE family	NA
UHGV-0069937_8	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0069937_9	UniRef90	UniRef90_A0A417I7U0	XRE family transcriptional regulator	NA
UHGV-0069937_9	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0069937_9	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0069937_9	Structural annotation	PF05339, MF_00535, NF041951, COG3655	NA	NA
UHGV-0069937_11	UniRef90	UniRef90_UPI000E4DC6CD	helix-turn-helix domain-containing protein	NA
UHGV-0069937_11	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0069937_14	PHROG	phrog_22529	NA	unknown function
UHGV-0069937_14	UniRef90	UniRef90_A0A417IHI2	3D domain-containing protein	NA
UHGV-0069937_14	eggNOG-mapper	33035.JPJF01000037_gene2909	3D domain	NA
UHGV-0069937_14	Pfam	PF06725	3D domain	3D
UHGV-0069937_14	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0069937_14	Structural annotation	PF06725, COG3584	NA	NA
UHGV-0069937_16	Structural annotation	PF04325, TIGR04116, COG5570	NA	NA
UHGV-0069937_17	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0069937_17	UniRef90	UniRef90_A0A7I8DYN2	YqaJ domain-containing protein	NA
UHGV-0069937_17	eggNOG-mapper	568816.Acin_1253	YqaJ viral recombinase family protein	NA
UHGV-0069937_17	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-0069937_17	NCBIFam	TIGR03033.1	putative phage-type endonuclease	NA
UHGV-0069937_17	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-0069937_17	Structural annotation	PF09588, TIGR03033, COG5377	NA	NA
UHGV-0069937_18	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0069937_18	PHROG	phrog_63	anti-repressor Ant	transcription regulation
UHGV-0069937_18	UniRef90	UniRef90_UPI000E539E62	phage antirepressor KilAC domain-containing protein	NA
UHGV-0069937_18	eggNOG-mapper	1123263.AUKY01000076_gene1778	Phage antirepressor protein	NA
UHGV-0069937_18	Pfam	PF08346	AntA/AntB antirepressor	AntA
UHGV-0069937_18	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0069937_18	COG	COG3561	Phage anti-repressor protein Ant	NA
UHGV-0069937_18	Structural annotation	PF03374, PF08346, TIGR02681, COG3645, COG3561	NA	NA
UHGV-0069937_19	PHROG	phrog_674	NA	unknown function
UHGV-0069937_19	UniRef90	UniRef90_A0A416FZA6	NA	NA
UHGV-0069937_19	Pfam	PF07083	NA	DUF1351
UHGV-0069937_19	Structural annotation	PF07083	NA	NA
UHGV-0069937_20	PHROG	phrog_2760	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0069937_20	UniRef90	UniRef90_A0A417IHY2	Phage recombination protein Bet	NA
UHGV-0069937_20	eggNOG-mapper	1122173.AXVL01000068_gene1414	DNA synthesis involved in double-strand break repair via homologous recombination	NA
UHGV-0069937_20	Pfam	PF03837	RecT family	RecT
UHGV-0069937_20	NCBIFam	TIGR01913.1	phage recombination protein Bet	NA
UHGV-0069937_20	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0069937_20	Structural annotation	PF03837, TIGR01913, COG3723	NA	NA
UHGV-0069937_22	PHROG	phrog_186	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0069937_22	Structural annotation	PF09681, MF_01177, NF033789, COG0640	NA	NA
UHGV-0069937_23	UniRef90	UniRef90_A0A417IHK4	Inhibitor_G39P domain-containing protein	NA
UHGV-0069937_23	Pfam	PF11417	Loader and inhibitor of phage G40P	Inhibitor_G39P
UHGV-0069937_23	Structural annotation	PF11417	NA	NA
UHGV-0069937_24	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0069937_24	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0069937_24	UniRef90	UniRef90_A0A7I8DYA5	Single-stranded DNA-binding protein	NA
UHGV-0069937_24	eggNOG-mapper	1504823.CCMM01000012_gene1971	Single-strand binding protein family	NA
UHGV-0069937_24	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0069937_24	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0069937_24	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0069937_24	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0069937_24	Structural annotation	PF00436, MF_00984, NF005579, COG0629	NA	NA
UHGV-0069937_27	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0069937_27	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0069937_27	UniRef90	UniRef90_A0A417IHK0	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0069937_27	eggNOG-mapper	1211844.CBLM010000016_gene1505	Endodeoxyribonuclease RusA	NA
UHGV-0069937_27	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0069937_27	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0069937_27	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0069937_29	KOfam	K21029	moeB; molybdopterin-synthase adenylyltransferase [EC:2.7.7.80]	NA
UHGV-0069937_29	UniRef90	UniRef90_A0A417IIR9	ThiF domain-containing protein	NA
UHGV-0069937_29	eggNOG-mapper	428127.EUBDOL_01242	ThiF family	NA
UHGV-0069937_29	PADLOC	E1E2_00006	E1-E2	CBASS
UHGV-0069937_29	Pfam	PF00899	ThiF family	ThiF
UHGV-0069937_29	COG	COG0476	Molybdopterin or thiamine biosynthesis adenylyltransferase	NA
UHGV-0069937_29	Structural annotation	PF00899, MF_03049, TIGR03736, COG0476	NA	NA
UHGV-0069937_31	UniRef90	UniRef90_A0A1T4LZF6	E2 family protein D	NA
UHGV-0069937_31	Structural annotation	PF14460, TIGR03737	NA	NA
UHGV-0069937_33	Structural annotation	PF01283, NF006816, COG4830	NA	NA
UHGV-0069937_34	eggNOG-mapper	1120978.KB894087_gene426	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC	NA
UHGV-0069937_34	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0069937_35	PHROG	phrog_10455	NA	unknown function
UHGV-0069937_35	UniRef90	UniRef90_R7N9Z9	Conserved domain protein	NA
UHGV-0069937_37	PHROG	phrog_22292	NA	unknown function
UHGV-0069937_38	PHROG	phrog_2245	nucleoside triphosphate pyrophosphohydrolase	other
UHGV-0069937_38	UniRef90	UniRef90_A0A417IIQ4	MazG domain-containing protein	NA
UHGV-0069937_38	eggNOG-mapper	665950.HMPREF1025_01374	NA	NA
UHGV-0069937_38	Structural annotation	PF01503, TIGR03188	NA	NA
UHGV-0069937_40	Structural annotation	PF07453	NA	NA
UHGV-0069937_41	Structural annotation	TIGR01636	NA	NA
UHGV-0069937_42	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0069937_42	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0069937_42	UniRef90	UniRef90_A0A417IN41	Terminase small subunit	NA
UHGV-0069937_42	eggNOG-mapper	1504823.CCMM01000008_gene1049	DNA packaging	NA
UHGV-0069937_42	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0069937_42	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0069937_42	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0069937_43	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0069937_43	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0069937_43	UniRef90	UniRef90_A0A417IN81	PBSX family phage terminase large subunit	NA
UHGV-0069937_43	eggNOG-mapper	1504823.CCMM01000008_gene1048	DNA packaging	NA
UHGV-0069937_43	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0069937_43	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0069937_43	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0069937_43	COG	COG1783	Phage terminase large subunit	NA
UHGV-0069937_43	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0069937_44	PHROG	phrog_64	portal protein	head and packaging
UHGV-0069937_44	UniRef90	UniRef90_A0A417IN69	Phage portal protein	NA
UHGV-0069937_44	eggNOG-mapper	1504823.CCMM01000008_gene1047	Phage portal protein, SPP1 family	NA
UHGV-0069937_44	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0069937_44	NCBIFam	TIGR01538.1	phage portal protein	NA
UHGV-0069937_44	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0069937_45	PHROG	phrog_115	minor head protein	head and packaging
UHGV-0069937_45	UniRef90	UniRef90_A0A1C5T9G1	NAD(+)--arginine ADP-ribosyltransferase EFV	NA
UHGV-0069937_45	eggNOG-mapper	1504823.CCMM01000008_gene1046	cell adhesion	NA
UHGV-0069937_45	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0069937_45	Pfam	PF14424	The BURPS668_1122 family of deaminases	Toxin-deaminase
UHGV-0069937_45	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0069937_45	COG	COG2369	NA	NA
UHGV-0069937_45	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-0069937_47	PHROG	phrog_1374	NA	unknown function
UHGV-0069937_48	PHROG	phrog_30609	NA	unknown function
UHGV-0069937_48	Structural annotation	PF21485	NA	NA
UHGV-0069937_50	PHROG	phrog_172	head scaffolding protein	head and packaging
UHGV-0069937_50	UniRef90	UniRef90_A0A417IN83	NA	NA
UHGV-0069937_50	eggNOG-mapper	1504823.CCMM01000008_gene1042	NA	NA
UHGV-0069937_50	Pfam	PF14265	NA	DUF4355
UHGV-0069937_50	Structural annotation	PF14265	NA	NA
UHGV-0069937_51	PHROG	phrog_267	major head protein	head and packaging
UHGV-0069937_51	UniRef90	UniRef90_A0A417IN35	P22 coat protein-protein 5 domain protein	NA
UHGV-0069937_51	eggNOG-mapper	1504823.CCMM01000008_gene1041	P22 coat protein-protein 5 domain protein	NA
UHGV-0069937_51	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0069937_52	UniRef90	UniRef90_A0A1C5TAF6	Rho termination factor, N-terminal domain	NA
UHGV-0069937_52	Pfam	PF07498	Rho termination factor, N-terminal domain	Rho_N
UHGV-0069937_52	Structural annotation	PF07498	NA	NA
UHGV-0069937_53	PHROG	phrog_132	head-tail adaptor	connector
UHGV-0069937_53	UniRef90	UniRef90_A0A1C6BLH2	Phage gp6-like head-tail connector protein	NA
UHGV-0069937_53	eggNOG-mapper	1504823.CCMM01000008_gene1039	NA	NA
UHGV-0069937_53	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0069937_53	Structural annotation	PF05135	NA	NA
UHGV-0069937_54	PHROG	phrog_2168	NA	unknown function
UHGV-0069937_54	eggNOG-mapper	1211844.CBLM010000016_gene1488	NA	NA
UHGV-0069937_55	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0069937_55	UniRef90	UniRef90_A0A1C5TAB0	Phage protein, HK97 gp10 family	NA
UHGV-0069937_55	eggNOG-mapper	1504823.CCMM01000008_gene1037	NA	NA
UHGV-0069937_55	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0069937_55	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0069937_55	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0069937_56	PHROG	phrog_78	tail terminator	connector
UHGV-0069937_56	eggNOG-mapper	1504823.CCMM01000008_gene1036	NA	NA
UHGV-0069937_56	Structural annotation	PF05657	NA	NA
UHGV-0069937_57	PHROG	phrog_158	major tail protein	tail
UHGV-0069937_57	UniRef90	UniRef90_A0A1C5TB95	Phage tail protein	NA
UHGV-0069937_57	eggNOG-mapper	1504823.CCMM01000008_gene1035	Phage tail tube protein, TTP	NA
UHGV-0069937_57	Pfam	PF08813	Phage tail tube protein, TTP	Phage_tail_3
UHGV-0069937_57	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-0069937_58	PHROG	phrog_183	tail chaperone protein	tail
UHGV-0069937_58	UniRef90	UniRef90_UPI000487273D	NA	NA
UHGV-0069937_58	eggNOG-mapper	1504823.CCMM01000008_gene1034	NA	NA
UHGV-0069937_58	Pfam	PF19591	NA	DUF6096
UHGV-0069937_58	Structural annotation	PF19591	NA	NA
UHGV-0069937_59	eggNOG-mapper	1504823.CCMM01000008_gene1033	NA	NA
UHGV-0069937_60	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0069937_60	UniRef90	UniRef90_A0A1C5TVU6	Phage-related minor tail protein	NA
UHGV-0069937_60	eggNOG-mapper	1504823.CCMM01000008_gene1032	phage tail tape measure protein	NA
UHGV-0069937_60	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0069937_60	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0069937_61	PHROG	phrog_1194	NA	unknown function
UHGV-0069937_61	eggNOG-mapper	1504823.CCMM01000008_gene1031	NA	NA
UHGV-0069937_61	Pfam	PF20458	NA	DUF6711
UHGV-0069937_61	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0069937_62	PHROG	phrog_38044	NA	unknown function
UHGV-0069937_62	UniRef90	UniRef90_G9QXA6	Ig-like domain-containing protein	NA
UHGV-0069937_62	eggNOG-mapper	445974.CLORAM_02919	cellulase activity	NA
UHGV-0069937_62	COG	COG4733	Phage-related protein, tail protein J	NA
UHGV-0069937_63	eggNOG-mapper	1504823.CCMM01000008_gene1029	NA	NA