UHGV-0069938

Genome information

Genome length 41,960 bps

CDS count 69

Completeness 67.77% (medium-quality)

geNomad score 0.9806

Prediction confidence Confident

Genome information
Genome ID	UHGV-0069938
vOTU ID	vOTU-069060
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_134211
BioSample	SAMEA2737679
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	HMM-based
CheckV completeness	67.77% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	20
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9806
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	53.59
Jumbo phage	No

Genome content
Genome length	41,960 bps
GC content	42.19%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	69
CDS density	90.11%
Average CDS length	552.09 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0069938_1	KOfam	K14059	int; integrase	NA
UHGV-0069938_1	PHROG	phrog_1	integrase	integration and excision
UHGV-0069938_1	UniRef90	UniRef90_A0A6L5YM13	Tyrosine-type recombinase/integrase	NA
UHGV-0069938_1	eggNOG-mapper	411468.CLOSCI_00325	Belongs to the 'phage' integrase family	NA
UHGV-0069938_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0069938_1	Structural annotation	PF00589, PF12167, MF_02055, NF040815, COG4974	NA	NA
UHGV-0069938_2	KOfam	K07171	mazF, ndoA, chpA; mRNA interferase MazF [EC:3.1.-.-]	NA
UHGV-0069938_2	PHROG	phrog_1412	antitoxin mazE-like	moron, auxiliary metabolic gene and host takeover
UHGV-0069938_2	UniRef90	UniRef90_UPI001C017756	type II toxin-antitoxin system PemK/MazF family toxin	NA
UHGV-0069938_2	eggNOG-mapper	1235792.C808_05257	Toxic component of a toxin-antitoxin (TA) module	NA
UHGV-0069938_2	Pfam	PF02452	PemK-like, MazF-like toxin of type II toxin-antitoxin system	PemK_toxin
UHGV-0069938_2	COG	COG2337	mRNA-degrading endonuclease MazF, toxin component of the MazEF toxin-antitoxin module	NA
UHGV-0069938_2	Structural annotation	PF02452, NF007386, COG2337	NA	NA
UHGV-0069938_3	PHROG	phrog_19315	NA	unknown function
UHGV-0069938_3	UniRef90	UniRef90_UPI0015EB67C6	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0069938_3	eggNOG-mapper	883156.HMPREF9282_00920	NA	NA
UHGV-0069938_3	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0069938_3	COG	COG1592	Rubrerythrin	NA
UHGV-0069938_3	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0069938_4	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0069938_4	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0069938_4	UniRef90	UniRef90_R5ZAU1	Conserved domain protein	NA
UHGV-0069938_4	eggNOG-mapper	556261.HMPREF0240_01268	Helix-turn-helix	NA
UHGV-0069938_4	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0069938_4	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0069938_4	Structural annotation	PF01381, MF_00535, NF041951, COG3655	NA	NA
UHGV-0069938_5	UniRef90	UniRef90_UPI000E52936A	helix-turn-helix domain-containing protein	NA
UHGV-0069938_5	eggNOG-mapper	887929.HMP0721_1290	Helix-turn-helix domain of resolvase	NA
UHGV-0069938_5	Pfam	PF02796	Helix-turn-helix domain of resolvase	HTH_7
UHGV-0069938_5	Structural annotation	PF05339, NF041951, COG3655	NA	NA
UHGV-0069938_7	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0069938_7	PHROG	phrog_63	anti-repressor Ant	transcription regulation
UHGV-0069938_7	UniRef90	UniRef90_A0A373CW16	Phage antirepressor Ant	NA
UHGV-0069938_7	eggNOG-mapper	411470.RUMGNA_02184	Phage antirepressor protein	NA
UHGV-0069938_7	Pfam	PF08346	AntA/AntB antirepressor	AntA
UHGV-0069938_7	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0069938_7	COG	COG3561	Phage anti-repressor protein Ant	NA
UHGV-0069938_7	Structural annotation	PF03374, PF08346, TIGR02681, COG3561, COG3645	NA	NA
UHGV-0069938_10	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0069938_10	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0069938_10	Structural annotation	PF13443, MF_00535, TIGR03070, COG3655	NA	NA
UHGV-0069938_11	Structural annotation	PF12750	NA	NA
UHGV-0069938_14	PHROG	phrog_674	NA	unknown function
UHGV-0069938_14	UniRef90	UniRef90_A0A3R6B153	NA	NA
UHGV-0069938_14	eggNOG-mapper	411460.RUMTOR_02065	NA	NA
UHGV-0069938_14	Pfam	PF07083	NA	DUF1351
UHGV-0069938_14	Structural annotation	PF07083	NA	NA
UHGV-0069938_15	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0069938_15	UniRef90	UniRef90_A0A173S979	ERF superfamily	NA
UHGV-0069938_15	eggNOG-mapper	1304866.K413DRAFT_1196	ERF superfamily	NA
UHGV-0069938_15	Pfam	PF04404	ERF superfamily	ERF
UHGV-0069938_15	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0069938_15	Structural annotation	PF04404, TIGR00607, COG4712	NA	NA
UHGV-0069938_16	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0069938_16	eggNOG-mapper	1304866.K413DRAFT_1197	NA	NA
UHGV-0069938_17	PHROG	phrog_7566	NA	unknown function
UHGV-0069938_17	UniRef90	UniRef90_A0A412KF94	Phosphoenolpyruvate carboxykinase	NA
UHGV-0069938_17	eggNOG-mapper	1007096.BAGW01000031_gene114	NA	NA
UHGV-0069938_19	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0069938_19	PHROG	phrog_1682	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0069938_19	UniRef90	UniRef90_A0A1C5MBR6	Endodeoxyribonuclease RusA	NA
UHGV-0069938_19	eggNOG-mapper	1235790.C805_00029	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC	NA
UHGV-0069938_19	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0069938_19	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0069938_19	Structural annotation	PF19595, NF007305, COG4570	NA	NA
UHGV-0069938_20	PHROG	phrog_16304	NA	unknown function
UHGV-0069938_20	UniRef90	UniRef90_A0A173S8B3	NA	NA
UHGV-0069938_20	eggNOG-mapper	411490.ANACAC_00800	NA	NA
UHGV-0069938_20	Pfam	PF19808	NA	DUF6291
UHGV-0069938_20	Structural annotation	PF19808	NA	NA
UHGV-0069938_24	eggNOG-mapper	397288.C806_00101	NA	NA
UHGV-0069938_25	eggNOG-mapper	1235790.C805_00035	NA	NA
UHGV-0069938_26	PHROG	phrog_7711	NA	unknown function
UHGV-0069938_26	UniRef90	UniRef90_UPI001C38CAD2	Lar family restriction alleviation protein	NA
UHGV-0069938_26	eggNOG-mapper	268407.PWYN_15580	NA	NA
UHGV-0069938_27	PHROG	phrog_98	NA	unknown function
UHGV-0069938_27	UniRef90	UniRef90_A0A3D5WQK7	YopX domain-containing protein	NA
UHGV-0069938_27	eggNOG-mapper	742723.HMPREF9477_00921	YopX protein	NA
UHGV-0069938_27	Pfam	PF09643	YopX protein	YopX
UHGV-0069938_27	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-0069938_27	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0069938_29	PHROG	phrog_599	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UHGV-0069938_29	UniRef90	UniRef90_UPI001186151F	Lar family restriction alleviation protein	NA
UHGV-0069938_29	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0069938_30	PHROG	phrog_20593	NA	unknown function
UHGV-0069938_31	PHROG	phrog_2118	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0069938_31	UniRef90	UniRef90_A0A2U2EKN9	HNHc domain-containing protein	NA
UHGV-0069938_31	eggNOG-mapper	1235799.C818_02668	endonuclease activity	NA
UHGV-0069938_31	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0069938_31	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0069938_31	Structural annotation	TIGR02646, COG1403	NA	NA
UHGV-0069938_33	PHROG	phrog_874	NA	unknown function
UHGV-0069938_33	UniRef90	UniRef90_A0A6N7W7Q7	ASCH domain-containing protein	NA
UHGV-0069938_33	eggNOG-mapper	411468.CLOSCI_00298	NA	NA
UHGV-0069938_33	Structural annotation	PF04266, MF_00684, NF003443, COG4405	NA	NA
UHGV-0069938_34	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0069938_34	UniRef90	UniRef90_A0A2H4JC51	Putative 3'-phosphoadenosine 5'-phosphosulfatesulfotransferase/FAD synthetase-related enzyme	NA
UHGV-0069938_34	eggNOG-mapper	693746.OBV_43240	NA	NA
UHGV-0069938_34	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0069938_34	Structural annotation	PF01507, MF_00064, TIGR00434, COG0175	NA	NA
UHGV-0069938_35	PHROG	phrog_14088	NA	unknown function
UHGV-0069938_35	UniRef90	UniRef90_UPI000E4EAB4B	carboxypeptidase	NA
UHGV-0069938_35	eggNOG-mapper	1235802.C823_04730	NA	NA
UHGV-0069938_36	PHROG	phrog_1305	DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0069938_36	UniRef90	UniRef90_UPI000E51D163	NA	NA
UHGV-0069938_36	eggNOG-mapper	1235802.C823_04729	NA	NA
UHGV-0069938_36	Pfam	PF13643	NA	DUF4145
UHGV-0069938_36	Structural annotation	PF13643	NA	NA
UHGV-0069938_38	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0069938_38	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0069938_38	UniRef90	UniRef90_A0A1Q6JBY5	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0069938_38	eggNOG-mapper	1235800.C819_02255	C-5 cytosine-specific DNA methylase	NA
UHGV-0069938_38	PADLOC	MTase_II_00164	Type II methyltransferase	RM
UHGV-0069938_38	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0069938_38	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0069938_38	Structural annotation	PF00145, MF_00351, TIGR00675, COG0270	NA	NA
UHGV-0069938_41	UniRef90	UniRef90_UPI001C02D4D3	ABC transporter ATP-binding protein	NA
UHGV-0069938_42	eggNOG-mapper	457421.CBFG_03465	NA	NA
UHGV-0069938_43	PHROG	phrog_33130	NA	unknown function
UHGV-0069938_43	UniRef90	UniRef90_A0A3B9CD52	S1-like domain-containing protein	NA
UHGV-0069938_43	Structural annotation	PF10922	NA	NA
UHGV-0069938_45	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0069938_45	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0069938_45	UniRef90	UniRef90_A0A3R6H2I4	Terminase_3 domain-containing protein	NA
UHGV-0069938_45	eggNOG-mapper	33035.JPJF01000106_gene3136	Terminase small subunit	NA
UHGV-0069938_45	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0069938_45	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0069938_45	COG	COG1783	Phage terminase large subunit	NA
UHGV-0069938_45	Structural annotation	PF04466, PF17289, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0069938_46	PHROG	phrog_1233	NA	unknown function
UHGV-0069938_46	eggNOG-mapper	33035.JPJF01000106_gene3130	NA	NA
UHGV-0069938_46	Structural annotation	PF13058	NA	NA
UHGV-0069938_47	PHROG	phrog_533	portal protein	head and packaging
UHGV-0069938_47	UniRef90	UniRef90_A0A3B9CD47	Phage capsid protein	NA
UHGV-0069938_47	eggNOG-mapper	476272.RUMHYD_01758	phage minor capsid protein	NA
UHGV-0069938_47	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0069938_48	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0069938_48	UniRef90	UniRef90_UPI000E4A8F9F	minor capsid protein	NA
UHGV-0069938_48	eggNOG-mapper	476272.RUMHYD_01780	NA	NA
UHGV-0069938_48	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0069938_48	Structural annotation	PF11114	NA	NA
UHGV-0069938_49	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0069938_49	UniRef90	UniRef90_A0A6L5YIK0	Phage capsid protein	NA
UHGV-0069938_49	eggNOG-mapper	936375.HMPREF1152_1071	NA	NA
UHGV-0069938_49	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0069938_49	COG	COG2369	NA	NA
UHGV-0069938_49	Structural annotation	PF06152	NA	NA
UHGV-0069938_51	eggNOG-mapper	1539298.JO41_08210	Phage minor structural protein GP20	NA
UHGV-0069938_52	PHROG	phrog_247	major head protein	head and packaging
UHGV-0069938_52	UniRef90	UniRef90_A0A3R6GNQ1	Phage coat protein	NA
UHGV-0069938_52	eggNOG-mapper	536233.CLO_0886	NA	NA
UHGV-0069938_52	COG	COG1106	ATPase/GTPase, AAA15 family	NA
UHGV-0069938_52	Structural annotation	PF20036, MF_04113, TIGR04387, COG4653	NA	NA
UHGV-0069938_53	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0069938_53	eggNOG-mapper	476272.RUMHYD_01778	NA	NA
UHGV-0069938_55	PHROG	phrog_3366	NA	unknown function
UHGV-0069938_55	eggNOG-mapper	476272.RUMHYD_01779	NA	NA
UHGV-0069938_55	Structural annotation	PF20536, COG5614	NA	NA
UHGV-0069938_56	PHROG	phrog_3266	tail completion	connector
UHGV-0069938_56	eggNOG-mapper	1120746.CCNL01000014_gene2101	NA	NA
UHGV-0069938_56	Structural annotation	PF12691	NA	NA
UHGV-0069938_57	PHROG	phrog_3099	NA	unknown function
UHGV-0069938_57	eggNOG-mapper	1235790.C805_00082	NA	NA
UHGV-0069938_57	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0069938_58	UniRef90	UniRef90_A0A3B9CD56	RNA polymerase subunit sigma	NA
UHGV-0069938_58	Structural annotation	PF10666	NA	NA
UHGV-0069938_59	PHROG	phrog_706	NA	unknown function
UHGV-0069938_59	UniRef90	UniRef90_C7GBZ7	Bacteriophage Gp15 protein	NA
UHGV-0069938_59	eggNOG-mapper	1235790.C805_00084	Bacteriophage Gp15 protein	NA
UHGV-0069938_59	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0069938_59	Structural annotation	PF06854	NA	NA
UHGV-0069938_61	Pfam	PF20458	NA	DUF6711
UHGV-0069938_62	PHROG	phrog_18190	NA	unknown function
UHGV-0069938_62	UniRef90	UniRef90_A0A173UFM3	Peptidase S74 domain-containing protein	NA
UHGV-0069938_62	eggNOG-mapper	397290.C810_05239	NA	NA
UHGV-0069938_62	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-0069938_62	Structural annotation	PF05113, NF033848, COG3500	NA	NA
UHGV-0069938_63	PHROG	phrog_17196	kinase	other
UHGV-0069938_63	UniRef90	UniRef90_A0A2M8Z316	Collagen triple helix repeat protein	NA
UHGV-0069938_63	eggNOG-mapper	483218.BACPEC_01141	NA	NA
UHGV-0069938_63	Structural annotation	PF19537, PF13619, COG3536	NA	NA
UHGV-0069938_66	PHROG	phrog_937	hemolysin	other
UHGV-0069938_67	PHROG	phrog_443	holin	lysis
UHGV-0069938_67	UniRef90	UniRef90_UPI001C0212A6	holin	NA
UHGV-0069938_67	eggNOG-mapper	469596.HMPREF9488_02591	Putative lactococcus lactis phage r1t holin	NA
UHGV-0069938_67	Structural annotation	PF16945	NA	NA
UHGV-0069938_68	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0069938_68	PHROG	phrog_435	endolysin	lysis
UHGV-0069938_68	UniRef90	UniRef90_A0A173UCF2	N-acetylmuramoyl-L-alanine amidase LytC	NA
UHGV-0069938_68	eggNOG-mapper	411490.ANACAC_00597	Cell wall hydrolase autolysin	NA
UHGV-0069938_68	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0069938_68	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0069938_68	Structural annotation	PF01520, MF_00562, TIGR02883, COG0860	NA	NA
UHGV-0069938_69	PHROG	phrog_497	toxin-antitoxin system HicB-like	moron, auxiliary metabolic gene and host takeover
UHGV-0069938_69	UniRef90	UniRef90_UPI001C00F918	type II toxin-antitoxin system HicB family antitoxin	NA
UHGV-0069938_69	eggNOG-mapper	97138.C820_00753	HicB_like antitoxin of bacterial toxin-antitoxin system	NA
UHGV-0069938_69	Pfam	PF15919	HicB_like antitoxin of bacterial toxin-antitoxin system	HicB_lk_antitox
UHGV-0069938_69	COG	COG1598	Antitoxin component HicB of the HicAB toxin-antitoxin system	NA
UHGV-0069938_69	Structural annotation	PF15919, COG1598	NA	NA