UHGV-0070068

Genome information

Genome length 31,095 bps

CDS count 43

Completeness 78.10% (medium-quality)

geNomad score 0.9815

Prediction confidence Confident

Genome information
Genome ID	UHGV-0070068
vOTU ID	vOTU-022694
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_126755
BioSample	SAMEA2737813
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	78.10% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9815
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	53.78
Jumbo phage	No

Genome content
Genome length	31,095 bps
GC content	43.45%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	43
CDS density	94.16%
Average CDS length	684.35 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0070068_1	PHROG	phrog_9534	head protein	head and packaging
UHGV-0070068_2	PHROG	phrog_538	minor tail protein	tail
UHGV-0070068_2	UniRef90	UniRef90_UPI00189C3ED1	siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-0070068_2	eggNOG-mapper	428127.EUBDOL_01212	NA	NA
UHGV-0070068_2	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0070068_2	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0070068_3	PHROG	phrog_36410	NA	unknown function
UHGV-0070068_3	UniRef90	UniRef90_UPI001897DDB7	phage tail family protein	NA
UHGV-0070068_3	eggNOG-mapper	428127.EUBDOL_01213	phage tail	NA
UHGV-0070068_3	COG	COG4722	Phage-related protein YomH	NA
UHGV-0070068_3	Structural annotation	PF16774, PF20753, TIGR01633, COG4722	NA	NA
UHGV-0070068_4	PHROG	phrog_1686	tail length tape measure protein	tail
UHGV-0070068_4	UniRef90	UniRef90_UPI001D0A3DB9	tape measure protein	NA
UHGV-0070068_4	eggNOG-mapper	999413.HMPREF1094_00207	nuclear chromosome segregation	NA
UHGV-0070068_4	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0070068_4	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0070068_4	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0070068_4	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0070068_5	PHROG	phrog_706	NA	unknown function
UHGV-0070068_5	UniRef90	UniRef90_UPI001D0AAED0	bacteriophage Gp15 family protein	NA
UHGV-0070068_5	eggNOG-mapper	999413.HMPREF1094_00208	Bacteriophage Gp15 protein	NA
UHGV-0070068_5	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0070068_5	Structural annotation	PF06854	NA	NA
UHGV-0070068_6	Structural annotation	PF10666	NA	NA
UHGV-0070068_7	PHROG	phrog_3099	NA	unknown function
UHGV-0070068_7	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0070068_8	UniRef90	UniRef90_UPI001D09DA0D	ABC transporter permease	NA
UHGV-0070068_8	Structural annotation	PF16807	NA	NA
UHGV-0070068_9	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0070068_9	UniRef90	UniRef90_UPI001D09B824	minor capsid protein	NA
UHGV-0070068_9	eggNOG-mapper	642492.Clole_0824	Minor capsid protein	NA
UHGV-0070068_9	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0070068_9	Structural annotation	PF11114	NA	NA
UHGV-0070068_10	UniRef90	UniRef90_UPI001E2BB5D0	minor capsid protein	NA
UHGV-0070068_10	Structural annotation	PF20536	NA	NA
UHGV-0070068_12	PHROG	phrog_212	major head protein	head and packaging
UHGV-0070068_12	UniRef90	UniRef90_UPI00189A455D	phage capsid protein	NA
UHGV-0070068_12	eggNOG-mapper	552396.HMPREF0863_00277	NA	NA
UHGV-0070068_12	Structural annotation	PF05065, MF_04119, NF041162, COG4653	NA	NA
UHGV-0070068_13	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0070068_13	UniRef90	UniRef90_UPI001D0A686C	phage scaffolding protein	NA
UHGV-0070068_13	eggNOG-mapper	1232449.BAHV02000010_gene2713	NA	NA
UHGV-0070068_13	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0070068_13	Structural annotation	PF06810	NA	NA
UHGV-0070068_15	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0070068_15	UniRef90	UniRef90_UPI001D0B3D9B	phage minor capsid protein	NA
UHGV-0070068_15	eggNOG-mapper	552396.HMPREF0863_00280	Phage minor capsid protein 2	NA
UHGV-0070068_15	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0070068_15	COG	COG2369	NA	NA
UHGV-0070068_15	Structural annotation	PF06152	NA	NA
UHGV-0070068_16	PHROG	phrog_533	portal protein	head and packaging
UHGV-0070068_16	UniRef90	UniRef90_UPI001430A874	phage portal protein	NA
UHGV-0070068_16	eggNOG-mapper	552396.HMPREF0863_00281	phage minor capsid protein	NA
UHGV-0070068_16	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0070068_17	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0070068_17	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0070068_17	UniRef90	UniRef90_UPI001D0AA0D4	terminase family protein	NA
UHGV-0070068_17	eggNOG-mapper	552396.HMPREF0863_00282	DNA packaging	NA
UHGV-0070068_17	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0070068_17	COG	COG1783	Phage terminase large subunit	NA
UHGV-0070068_17	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0070068_18	PHROG	phrog_2412	NA	unknown function
UHGV-0070068_18	UniRef90	UniRef90_UPI000427CABE	KGG domain-containing protein	NA
UHGV-0070068_18	eggNOG-mapper	1232449.BAHV02000018_gene1532	NA	NA
UHGV-0070068_19	UniRef90	UniRef90_A0A3M2FZW3	Chromosome partitioning protein ParB (Fragment)	NA
UHGV-0070068_19	eggNOG-mapper	1399942.U3PCR3_9CAUD	helicase activity	NA
UHGV-0070068_20	Structural annotation	TIGR01637	NA	NA
UHGV-0070068_21	KOfam	K14440	SMARCAL1, HARP; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:5.6.2.-]	NA
UHGV-0070068_21	PHROG	phrog_62	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0070068_21	UniRef90	UniRef90_UPI001E5F6A13	DEAD/DEAH box helicase	NA
UHGV-0070068_21	eggNOG-mapper	552396.HMPREF0863_00284	SNF2 family N-terminal domain	NA
UHGV-0070068_21	PADLOC	ZorD1_00007	SWI2/SNF2 helicase, Mrr-like nuclease	Zorya
UHGV-0070068_21	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-0070068_21	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0070068_21	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-0070068_21	Structural annotation	PF13872, PF16203, MF_01821, NF041790, COG0553	NA	NA
UHGV-0070068_22	PHROG	phrog_93	endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0070068_22	UniRef90	UniRef90_UPI00189BA373	VRR-NUC domain-containing protein	NA
UHGV-0070068_22	eggNOG-mapper	1122146.AUHP01000010_gene1025	VRR_NUC	NA
UHGV-0070068_22	Structural annotation	PF01870, MF_00130, NF040854, COG1591	NA	NA
UHGV-0070068_24	PHROG	phrog_2245	nucleoside triphosphate pyrophosphohydrolase	other
UHGV-0070068_24	UniRef90	UniRef90_A0A413KAN3	MazG domain-containing protein	NA
UHGV-0070068_24	eggNOG-mapper	326426.Bbr_0313	NA	NA
UHGV-0070068_24	Structural annotation	PF12643, MF_01020, TIGR03188, COG0140	NA	NA
UHGV-0070068_25	PHROG	phrog_256	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0070068_25	UniRef90	UniRef90_UPI001D0A1C03	virulence-associated E family protein	NA
UHGV-0070068_25	eggNOG-mapper	552396.HMPREF0863_00286	NA	NA
UHGV-0070068_25	Pfam	PF05272	Virulence-associated protein E-like domain	VapE-like_dom
UHGV-0070068_25	COG	COG5545	Predicted P-loop ATPase and inactivated derivatives	NA
UHGV-0070068_25	Structural annotation	PF05272, MF_04000, NF005477, NF040562, COG5545	NA	NA
UHGV-0070068_29	KOfam	K02334	dpo; DNA polymerase bacteriophage-type [EC:2.7.7.7]	NA
UHGV-0070068_29	PHROG	phrog_17	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0070068_29	UniRef90	UniRef90_UPI001D0A031A	DNA polymerase	NA
UHGV-0070068_29	eggNOG-mapper	552396.HMPREF0863_00289	DNA polymerase	NA
UHGV-0070068_29	Pfam	PF00476	DNA polymerase family A	DNA_pol_A
UHGV-0070068_29	COG	COG0749	DNA polymerase I, 3'-5' exonuclease and polymerase domains	NA
UHGV-0070068_29	Structural annotation	PF00476, MF_04101, NF011540, COG0749	NA	NA
UHGV-0070068_30	PHROG	phrog_112	Gp2.5-like ssDNA binding protein and ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0070068_30	UniRef90	UniRef90_UPI0018993946	NA	NA
UHGV-0070068_30	eggNOG-mapper	552396.HMPREF0863_00290	NA	NA
UHGV-0070068_30	Pfam	PF10991	Enterobacter phage Enc34, ssDNA-binding protein	Enc34_ssDNA-bd
UHGV-0070068_30	Structural annotation	PF10991, MF_04153	NA	NA
UHGV-0070068_31	PHROG	phrog_69	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0070068_31	UniRef90	UniRef90_UPI001D0AE809	NA	NA
UHGV-0070068_31	eggNOG-mapper	1265507.KB899640_gene14	NA	NA
UHGV-0070068_31	Pfam	PF10926	NA	DUF2800
UHGV-0070068_31	COG	COG2887	RecB family exonuclease	NA
UHGV-0070068_31	Structural annotation	PF10926, MF_03030, TIGR00372, COG2887	NA	NA
UHGV-0070068_34	Structural annotation	PF06786	NA	NA
UHGV-0070068_35	Structural annotation	NF040990	NA	NA
UHGV-0070068_37	PHROG	phrog_585	NA	unknown function
UHGV-0070068_37	UniRef90	UniRef90_UPI0018980CB0	NA	NA
UHGV-0070068_37	Pfam	PF10711	NA	DUF2513
UHGV-0070068_41	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0070068_41	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0070068_41	UniRef90	UniRef90_UPI001D0B4888	helix-turn-helix domain-containing protein	NA
UHGV-0070068_41	eggNOG-mapper	411468.CLOSCI_01457	Helix-turn-helix XRE-family like proteins	NA
UHGV-0070068_41	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0070068_41	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0070068_41	Structural annotation	PF01381, MF_00535, NF007257, COG1476	NA	NA
UHGV-0070068_42	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-0070068_42	UniRef90	UniRef90_UPI001D09EDED	helix-turn-helix domain-containing protein	NA
UHGV-0070068_42	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0070068_42	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0070068_42	Structural annotation	PF00717, PF01381, MF_00015, TIGR00498, COG2932	NA	NA
UHGV-0070068_43	KOfam	K14059	int; integrase	NA
UHGV-0070068_43	PHROG	phrog_1	integrase	integration and excision
UHGV-0070068_43	UniRef90	UniRef90_UPI00189BAE2B	site-specific integrase	NA
UHGV-0070068_43	eggNOG-mapper	1095750.HMPREF9970_0588	Arm DNA-binding domain	NA
UHGV-0070068_43	Pfam	PF14657	Arm DNA-binding domain	Arm-DNA-bind_4
UHGV-0070068_43	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0070068_43	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0070068_43	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0070068_43	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA