UHGV-0070084

Genome information

Genome length 32,830 bps

CDS count 46

Completeness 87.23% (medium-quality)

geNomad score 0.9771

Prediction confidence Confident

Genome information
Genome ID	UHGV-0070084
vOTU ID	vOTU-029362
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_135748
BioSample	SAMEA2737759
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	87.23% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9771
Virus hallmark genes (geNomad)	17
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	50.8
Jumbo phage	No

Genome content
Genome length	32,830 bps
GC content	58.56%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	46
CDS density	92.68%
Average CDS length	665.09 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0070084_1	KOfam	K14059	int; integrase	NA
UHGV-0070084_1	PHROG	phrog_1	integrase	integration and excision
UHGV-0070084_1	UniRef90	UniRef90_A0A417F5S2	Site-specific integrase	NA
UHGV-0070084_1	eggNOG-mapper	1408437.JNJN01000039_gene380	Phage integrase, N-terminal SAM-like domain	NA
UHGV-0070084_1	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0070084_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0070084_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0070084_1	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0070084_2	PHROG	phrog_38135	NA	unknown function
UHGV-0070084_2	UniRef90	UniRef90_A0A416DH09	NA	NA
UHGV-0070084_2	eggNOG-mapper	398511.BpOF4_17590	NA	NA
UHGV-0070084_2	Pfam	PF14020	NA	DUF4236
UHGV-0070084_2	COG	COG0457	Tetratricopeptide (TPR) repeat	NA
UHGV-0070084_2	Structural annotation	PF14020, PF21602	NA	NA
UHGV-0070084_3	PHROG	phrog_87	metallo-protease	other
UHGV-0070084_3	UniRef90	UniRef90_A0A416DGX8	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0070084_3	eggNOG-mapper	1226322.HMPREF1545_00086	NA	NA
UHGV-0070084_3	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0070084_3	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0070084_4	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0070084_4	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0070084_4	UniRef90	UniRef90_UPI00164B16CD	helix-turn-helix domain-containing protein	NA
UHGV-0070084_4	eggNOG-mapper	1419814.V470_06145	Transcriptional	NA
UHGV-0070084_4	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0070084_4	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0070084_4	Structural annotation	PF12844, MF_00535, NF041951, COG1476	NA	NA
UHGV-0070084_5	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0070084_5	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0070084_5	UniRef90	UniRef90_A0A417BRQ8	XRE family transcriptional regulator	NA
UHGV-0070084_5	eggNOG-mapper	397291.C804_05455	Helix-turn-helix XRE-family like proteins	NA
UHGV-0070084_5	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0070084_5	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0070084_5	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0070084_6	UniRef90	UniRef90_A0A417F5Y8	DNA-binding protein	NA
UHGV-0070084_6	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0070084_7	PHROG	phrog_6499	transcriptional regulator	transcription regulation
UHGV-0070084_7	UniRef90	UniRef90_A0A417HFZ8	XRE family transcriptional regulator	NA
UHGV-0070084_7	eggNOG-mapper	1203606.HMPREF1526_00992	Helix-turn-helix XRE-family like proteins	NA
UHGV-0070084_7	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-0070084_7	COG	COG1813	Archaeal ribosome-binding protein aMBF1, putative translation factor, contains Zn-ribbon and HTH domains	NA
UHGV-0070084_7	Structural annotation	PF01381, MF_00535, NF040522, COG1476	NA	NA
UHGV-0070084_10	PHROG	phrog_11233	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0070084_10	UniRef90	UniRef90_H6LCD1	Bacteriophage-like protein	NA
UHGV-0070084_10	eggNOG-mapper	931626.Awo_c35220	DnaD domain protein	NA
UHGV-0070084_10	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0070084_10	Structural annotation	PF13463, TIGR01889, COG1846	NA	NA
UHGV-0070084_11	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0070084_11	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0070084_11	UniRef90	UniRef90_A0A3E2XWR1	DNA helicase	NA
UHGV-0070084_11	eggNOG-mapper	693746.OBV_27440	DnaB-like helicase N terminal domain	NA
UHGV-0070084_11	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0070084_11	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0070084_11	COG	COG0305	Replicative DNA helicase	NA
UHGV-0070084_11	Structural annotation	PF03796, PF00772, MF_04155, NF005240, COG0305	NA	NA
UHGV-0070084_12	Structural annotation	PF07870	NA	NA
UHGV-0070084_13	UniRef90	UniRef90_A0A417TN68	HTH_58 domain-containing protein	NA
UHGV-0070084_13	Structural annotation	PF02796	NA	NA
UHGV-0070084_14	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-0070084_14	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0070084_14	UniRef90	UniRef90_A0A416DGY9	ParA family protein	NA
UHGV-0070084_14	eggNOG-mapper	742738.HMPREF9460_00854	4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family	NA
UHGV-0070084_14	Pfam	PF13614	AAA domain	AAA_31
UHGV-0070084_14	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-0070084_14	Structural annotation	PF13614, MF_00533, TIGR03453, COG1192	NA	NA
UHGV-0070084_15	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0070084_15	PHROG	phrog_27290	NA	unknown function
UHGV-0070084_15	UniRef90	UniRef90_UPI001C01E910	ParB N-terminal domain-containing protein	NA
UHGV-0070084_15	eggNOG-mapper	693746.OBV_19860	ParB-like nuclease domain	NA
UHGV-0070084_15	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0070084_15	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0070084_15	Structural annotation	PF12961, PF02195, MF_02015, MF_00684, TIGR04285, NF003443, COG1475, COG3097	NA	NA
UHGV-0070084_17	PHROG	phrog_9958	NA	unknown function
UHGV-0070084_17	eggNOG-mapper	742735.HMPREF9467_00844	NA	NA
UHGV-0070084_17	Structural annotation	PF19789	NA	NA
UHGV-0070084_18	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0070084_18	eggNOG-mapper	1203606.HMPREF1526_00985	NA	NA
UHGV-0070084_18	Structural annotation	PF01446	NA	NA
UHGV-0070084_19	Structural annotation	PF15188	NA	NA
UHGV-0070084_20	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0070084_20	PHROG	phrog_498	DNA methyltransferase	other
UHGV-0070084_20	UniRef90	UniRef90_A0A417TPF6	Methyltransferase	NA
UHGV-0070084_20	eggNOG-mapper	693746.OBV_19980	DNA methylase	NA
UHGV-0070084_20	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-0070084_20	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0070084_20	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0070084_20	COG	COG0863	DNA modification methylase	NA
UHGV-0070084_20	Structural annotation	PF01555, PF02195, MF_02015, MF_01872, NF010253, TIGR04285, COG0863, COG1475	NA	NA
UHGV-0070084_21	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-0070084_21	UniRef90	UniRef90_A0A417HFX2	Phage terminase small subunit P27 family	NA
UHGV-0070084_21	eggNOG-mapper	1007096.BAGW01000012_gene2373	Phage terminase, small subunit	NA
UHGV-0070084_21	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0070084_21	NCBIFam	TIGR01558.1	phage terminase small subunit P27 family	NA
UHGV-0070084_21	COG	COG3747	Phage terminase, small subunit	NA
UHGV-0070084_21	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0070084_22	PHROG	phrog_474	phosphofructokinase	other
UHGV-0070084_22	UniRef90	UniRef90_A0A3E2XXK5	NA	NA
UHGV-0070084_22	eggNOG-mapper	428125.CLOLEP_01367	NA	NA
UHGV-0070084_22	Pfam	PF19905	NA	DUF6378
UHGV-0070084_22	Structural annotation	PF19905	NA	NA
UHGV-0070084_26	PHROG	phrog_12	portal protein	head and packaging
UHGV-0070084_26	UniRef90	UniRef90_A0A3E2XWZ9	Phage portal protein	NA
UHGV-0070084_26	eggNOG-mapper	171693.BN988_01606	Phage portal protein	NA
UHGV-0070084_26	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0070084_26	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0070084_26	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0070084_26	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0070084_27	PHROG	phrog_1480	tail sheath	tail
UHGV-0070084_27	UniRef90	UniRef90_A0A845N0B3	Phage tail protein	NA
UHGV-0070084_27	eggNOG-mapper	97138.C820_00609	Phage tail sheath C-terminal domain	NA
UHGV-0070084_27	Pfam	PF17482	Phage tail sheath C-terminal domain	Phage_sheath_1C
UHGV-0070084_27	Structural annotation	PF10758, COG3497	NA	NA
UHGV-0070084_28	PHROG	phrog_10	major head protein	head and packaging
UHGV-0070084_28	UniRef90	UniRef90_A0A415ZGH3	Phage major capsid protein	NA
UHGV-0070084_28	eggNOG-mapper	1111454.HMPREF1250_0251	phage major capsid protein, HK97 family	NA
UHGV-0070084_28	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0070084_28	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0070084_28	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0070084_28	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0070084_29	PHROG	phrog_365	tail protein	tail
UHGV-0070084_29	UniRef90	UniRef90_A0A3E2XWR4	Terminase	NA
UHGV-0070084_29	eggNOG-mapper	1203606.HMPREF1526_01345	Phage tail tube protein	NA
UHGV-0070084_29	Pfam	PF09393	Phage tail tube protein	DUF2001
UHGV-0070084_29	Structural annotation	PF09393, TIGR02241, COG3498	NA	NA
UHGV-0070084_30	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0070084_30	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0070084_30	UniRef90	UniRef90_A0A416DH21	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0070084_30	eggNOG-mapper	1095750.HMPREF9970_2268	Belongs to the peptidase S14 family	NA
UHGV-0070084_30	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0070084_30	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0070084_30	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA
UHGV-0070084_31	UniRef90	UniRef90_A0A3E2XWS7	Phage gp6-like head-tail connector protein	NA
UHGV-0070084_31	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0070084_31	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0070084_32	UniRef90	UniRef90_A0A417F5D6	Head-tail adaptor protein	NA
UHGV-0070084_32	eggNOG-mapper	394503.Ccel_2954	Phage head-tail adaptor	NA
UHGV-0070084_32	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0070084_32	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0070084_32	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0070084_33	UniRef90	UniRef90_UPI00189BF3BE	HK97 gp10 family phage protein	NA
UHGV-0070084_33	eggNOG-mapper	394503.Ccel_2953	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0070084_33	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0070084_33	Structural annotation	PF17395, TIGR01725, COG5005	NA	NA
UHGV-0070084_34	eggNOG-mapper	1203606.HMPREF1526_01343	NA	NA
UHGV-0070084_34	Structural annotation	PF20765, TIGR01633, COG5003	NA	NA
UHGV-0070084_35	PHROG	phrog_4976	tail assembly chaperone	tail
UHGV-0070084_35	eggNOG-mapper	1203606.HMPREF1526_01346	NA	NA
UHGV-0070084_35	Structural annotation	PF08890, TIGR01674	NA	NA
UHGV-0070084_37	PHROG	phrog_23464	NA	unknown function
UHGV-0070084_37	UniRef90	UniRef90_A0A1C6JGQ9	Phage-related minor tail protein	NA
UHGV-0070084_37	eggNOG-mapper	665950.HMPREF1025_02660	phage tail tape measure protein	NA
UHGV-0070084_37	COG	COG5283	Phage-related tail protein	NA
UHGV-0070084_37	Structural annotation	PF20155, COG3941	NA	NA
UHGV-0070084_38	PHROG	phrog_23201	NA	unknown function
UHGV-0070084_38	UniRef90	UniRef90_UPI000F05162E	phage portal protein	NA
UHGV-0070084_38	eggNOG-mapper	1120998.AUFC01000013_gene2949	LysM domain	NA
UHGV-0070084_38	COG	COG1652	Cytoplasmic potassium-binding protein Kbp/XkdP/YgaU, contains LysM domain	NA
UHGV-0070084_38	Structural annotation	PF19266, TIGR02126, COG3499	NA	NA
UHGV-0070084_39	PHROG	phrog_400	tail protein	tail
UHGV-0070084_39	UniRef90	UniRef90_A0A3E2XWU2	CHAP domain-containing protein	NA
UHGV-0070084_39	eggNOG-mapper	500633.CLOHIR_00378	NLP P60 protein	NA
UHGV-0070084_39	Pfam	PF05257	CHAP domain	CHAP
UHGV-0070084_39	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0070084_39	Structural annotation	PF14594, PF00877, MF_02071, NF033848, COG4379, COG0791, COG3584	NA	NA
UHGV-0070084_40	Structural annotation	PF10844, MF_00216, TIGR00523, COG0361	NA	NA
UHGV-0070084_41	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0070084_41	UniRef90	UniRef90_A0A3E2XXG2	Terminase large subunit	NA
UHGV-0070084_41	eggNOG-mapper	1007096.BAGW01000012_gene2374	Phage Terminase	NA
UHGV-0070084_41	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0070084_41	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0070084_41	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0070084_41	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0070084_42	UniRef90	UniRef90_A0A3E2XWS6	NA	NA
UHGV-0070084_42	eggNOG-mapper	318464.IO99_13685	NA	NA
UHGV-0070084_42	Pfam	PF10934	NA	DUF2634
UHGV-0070084_42	COG	COG3628	Phage baseplate assembly protein W	NA
UHGV-0070084_42	Structural annotation	PF10934, MF_02010, NF010728, COG4381	NA	NA
UHGV-0070084_43	PHROG	phrog_6	baseplate protein	tail
UHGV-0070084_43	UniRef90	UniRef90_A0A415ZGA0	Baseplate J protein	NA
UHGV-0070084_43	eggNOG-mapper	1203606.HMPREF1526_01353	Baseplate J-like protein	NA
UHGV-0070084_43	Pfam	PF04865	Baseplate J-like protein	Baseplate_J
UHGV-0070084_43	COG	COG3299	NA	NA
UHGV-0070084_43	Structural annotation	PF04865, PF21379, MF_04102, TIGR02243, COG3299	NA	NA
UHGV-0070084_44	PHROG	phrog_521	tail protein	tail
UHGV-0070084_44	UniRef90	UniRef90_A0A415ZGE0	NA	NA
UHGV-0070084_44	eggNOG-mapper	536232.CLM_1676	NA	NA
UHGV-0070084_44	Pfam	PF10076	Bacteriophage Mu-like, Gp48	Phage_Mu_Gp48
UHGV-0070084_44	COG	COG3778	NA	NA
UHGV-0070084_44	Structural annotation	PF10076, TIGR02242, COG3778	NA	NA
UHGV-0070084_45	Structural annotation	NF012201	NA	NA
UHGV-0070084_46	PHROG	phrog_18723	NA	unknown function