UHGV-0070166

Genome information

Genome length 29,409 bps

CDS count 40

Completeness 76.97% (medium-quality)

geNomad score 0.9825

Prediction confidence Confident

Genome information
Genome ID	UHGV-0070166
vOTU ID	vOTU-036725
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_113736
BioSample	SAMEA2580240
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	76.97% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	31
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9825
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	81.32
Jumbo phage	No

Genome content
Genome length	29,409 bps
GC content	42.36%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	40
CDS density	89.89%
Average CDS length	662.78 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0070166_1	PHROG	phrog_1204	tail protein	tail
UHGV-0070166_1	UniRef90	UniRef90_UPI0011691D31	tape measure protein	NA
UHGV-0070166_1	eggNOG-mapper	646413.C5IUK3_9CAUD	transmembrane transport	NA
UHGV-0070166_1	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0070166_1	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0070166_1	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0070166_2	PHROG	phrog_706	NA	unknown function
UHGV-0070166_2	UniRef90	UniRef90_UPI001172F873	Gp15 family bacteriophage protein	NA
UHGV-0070166_2	eggNOG-mapper	646413.C5IUK2_9CAUD	Bacteriophage Gp15 protein	NA
UHGV-0070166_2	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0070166_2	Structural annotation	PF06854	NA	NA
UHGV-0070166_3	PHROG	phrog_1061	NA	unknown function
UHGV-0070166_3	UniRef90	UniRef90_A0A139RN56	NA	NA
UHGV-0070166_3	eggNOG-mapper	1035189.HMPREF9954_0315	NA	NA
UHGV-0070166_3	Structural annotation	PF10666	NA	NA
UHGV-0070166_4	PHROG	phrog_820	major tail protein	tail
UHGV-0070166_4	UniRef90	UniRef90_A0A448A8F6	Tail shaft protein	NA
UHGV-0070166_4	eggNOG-mapper	646413.C5IUK0_9CAUD	NA	NA
UHGV-0070166_4	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0070166_5	PHROG	phrog_913	minor head protein	head and packaging
UHGV-0070166_5	UniRef90	UniRef90_A0A2C5WHK7	Capsid protein	NA
UHGV-0070166_5	eggNOG-mapper	646413.C5IUJ9_9CAUD	Minor capsid protein from bacteriophage	NA
UHGV-0070166_5	Pfam	PF12691	Bacteriophage minor capsid protein	Minor_capsid_3
UHGV-0070166_5	Structural annotation	PF12691	NA	NA
UHGV-0070166_6	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0070166_6	UniRef90	UniRef90_A0A2L2PBJ6	Capsid protein	NA
UHGV-0070166_6	eggNOG-mapper	646413.C5IUJ8_9CAUD	Minor capsid protein	NA
UHGV-0070166_6	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0070166_6	Structural annotation	PF11114, TIGR01725	NA	NA
UHGV-0070166_7	PHROG	phrog_793	head-tail adaptor	connector
UHGV-0070166_7	UniRef90	UniRef90_A0A2C5WI04	Minor capsid protein	NA
UHGV-0070166_7	eggNOG-mapper	537874.B3GW07_9CAUD	Minor capsid protein	NA
UHGV-0070166_7	Pfam	PF10665	Minor capsid protein	Minor_capsid_1
UHGV-0070166_7	Structural annotation	PF10665, TIGR01563, COG5614	NA	NA
UHGV-0070166_8	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0070166_8	UniRef90	UniRef90_A0A3S4LW47	NA	NA
UHGV-0070166_8	eggNOG-mapper	646413.C5IUJ7_9CAUD	NA	NA
UHGV-0070166_9	UniRef90	UniRef90_A0A3S4QL55	Transcription termination factor	NA
UHGV-0070166_9	Pfam	PF07498	Rho termination factor, N-terminal domain	Rho_N
UHGV-0070166_9	Structural annotation	PF07498	NA	NA
UHGV-0070166_10	PHROG	phrog_544	major head protein	head and packaging
UHGV-0070166_10	UniRef90	UniRef90_C5IUJ5	Major head protein	NA
UHGV-0070166_10	eggNOG-mapper	646413.C5IUJ5_9CAUD	peptidase activity	NA
UHGV-0070166_10	NCBIFam	TIGR04387.1	N4-gp56 family major capsid protein	NA
UHGV-0070166_10	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0070166_11	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0070166_11	UniRef90	UniRef90_A0A3S5H0G3	Scaffolding protein	NA
UHGV-0070166_11	eggNOG-mapper	646413.C5IUJ4_9CAUD	Phage minor structural protein GP20	NA
UHGV-0070166_11	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0070166_12	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0070166_12	UniRef90	UniRef90_C5IUJ3	Putative minor capsid protein	NA
UHGV-0070166_12	eggNOG-mapper	646413.C5IUJ3_9CAUD	Phage minor capsid protein 2	NA
UHGV-0070166_12	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0070166_12	Structural annotation	PF06152	NA	NA
UHGV-0070166_13	PHROG	phrog_533	portal protein	head and packaging
UHGV-0070166_13	UniRef90	UniRef90_UPI0011703CB6	phage portal protein	NA
UHGV-0070166_13	eggNOG-mapper	646413.C5IUJ2_9CAUD	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0070166_13	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0070166_13	NCBIFam	TIGR01542.1	phage portal protein	NA
UHGV-0070166_13	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0070166_14	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0070166_14	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0070166_14	UniRef90	UniRef90_A0A2C5WCW2	PBSX family phage terminase large subunit	NA
UHGV-0070166_14	eggNOG-mapper	646413.C5IUJ1_9CAUD	Pfam:Terminase_3C	NA
UHGV-0070166_14	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0070166_14	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0070166_14	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0070166_14	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0070166_15	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0070166_15	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0070166_15	UniRef90	UniRef90_A0A2C5WJ26	Terminase	NA
UHGV-0070166_15	eggNOG-mapper	1054460.SPPN_00130	DNA packaging	NA
UHGV-0070166_15	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0070166_15	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0070166_15	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0070166_16	PHROG	phrog_248	transcriptional activator	transcription regulation
UHGV-0070166_16	UniRef90	UniRef90_A0A191KC45	ArpU late transcriptional regulator	NA
UHGV-0070166_16	eggNOG-mapper	1403946.Q615_SPAC00127G0144	Transcriptional regulator, ArpU family	NA
UHGV-0070166_16	NCBIFam	TIGR01637.1	ArpU family phage packaging/lysis transcriptional regulator	NA
UHGV-0070166_16	Structural annotation	PF05263, MF_00674, TIGR01637, COG1191	NA	NA
UHGV-0070166_17	PHROG	phrog_1814	NA	unknown function
UHGV-0070166_17	UniRef90	UniRef90_UPI0019194F7A	NA	NA
UHGV-0070166_17	Pfam	PF07067	NA	DUF1340
UHGV-0070166_17	Structural annotation	PF07067	NA	NA
UHGV-0070166_18	PHROG	phrog_24146	NA	unknown function
UHGV-0070166_19	PHROG	phrog_98	NA	unknown function
UHGV-0070166_19	UniRef90	UniRef90_UPI001C013AEC	YopX family protein	NA
UHGV-0070166_19	eggNOG-mapper	1158614.I592_03402	YopX protein	NA
UHGV-0070166_19	Pfam	PF09643	YopX protein	YopX
UHGV-0070166_19	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-0070166_19	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0070166_20	PHROG	phrog_884	NA	unknown function
UHGV-0070166_20	UniRef90	UniRef90_A0A1V0H7R5	NA	NA
UHGV-0070166_20	eggNOG-mapper	365659.smi_0433	NA	NA
UHGV-0070166_20	Pfam	PF07116	NA	DUF1372
UHGV-0070166_20	Structural annotation	PF07116	NA	NA
UHGV-0070166_21	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0070166_21	PHROG	phrog_1994	DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0070166_21	UniRef90	UniRef90_UPI001C01E7D4	helix-turn-helix domain-containing protein	NA
UHGV-0070166_21	eggNOG-mapper	85154.O34051_BPO12	sequence-specific DNA binding	NA
UHGV-0070166_21	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0070166_21	Structural annotation	PF01381, PF12643, MF_01019, NF041951, COG1476, COG1694	NA	NA
UHGV-0070166_22	PHROG	phrog_121	NA	unknown function
UHGV-0070166_22	UniRef90	UniRef90_UPI001D0B95BB	NA	NA
UHGV-0070166_22	eggNOG-mapper	936580.HMPREF1516_0729	NA	NA
UHGV-0070166_22	Pfam	PF07852	NA	DUF1642
UHGV-0070166_22	Structural annotation	PF07852	NA	NA
UHGV-0070166_23	PHROG	phrog_5513	NA	unknown function
UHGV-0070166_24	PHROG	phrog_1489	NA	unknown function
UHGV-0070166_25	PHROG	phrog_14577	NA	unknown function
UHGV-0070166_25	Structural annotation	PF11305, MF_01360	NA	NA
UHGV-0070166_26	PHROG	phrog_1982	NA	unknown function
UHGV-0070166_26	Structural annotation	PF01381, NF040507, COG2944	NA	NA
UHGV-0070166_27	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0070166_27	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0070166_27	UniRef90	UniRef90_UPI0012BD12A4	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0070166_27	eggNOG-mapper	112023.Q9MCM0_9CAUD	magnesium ion binding	NA
UHGV-0070166_27	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0070166_27	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0070166_28	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0070166_28	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0070166_28	UniRef90	UniRef90_A0A1V0H7S2	Single-stranded DNA-binding protein	NA
UHGV-0070166_28	eggNOG-mapper	646413.C5IUI2_9CAUD	Single-strand binding protein family	NA
UHGV-0070166_28	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0070166_28	NCBIFam	NF005580.0	single-stranded DNA-binding protein	NA
UHGV-0070166_28	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0070166_28	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0070166_29	PHROG	phrog_674	NA	unknown function
UHGV-0070166_29	UniRef90	UniRef90_UPI001582FF97	NA	NA
UHGV-0070166_29	eggNOG-mapper	1239381.K4JU67_9CAUD	NA	NA
UHGV-0070166_29	Pfam	PF07083	NA	DUF1351
UHGV-0070166_29	Structural annotation	PF07083	NA	NA
UHGV-0070166_30	PHROG	phrog_25348	NA	unknown function
UHGV-0070166_30	UniRef90	UniRef90_A0A2C5WGU6	Single-stranded DNA-binding protein	NA
UHGV-0070166_30	eggNOG-mapper	1277892.M1IEW6_9CAUD	ERF superfamily	NA
UHGV-0070166_30	Pfam	PF04404	ERF superfamily	ERF
UHGV-0070166_30	Structural annotation	PF04404, TIGR00607, COG4712	NA	NA
UHGV-0070166_31	PHROG	phrog_2486	NA	unknown function
UHGV-0070166_31	UniRef90	UniRef90_A0A139QHN0	NA	NA
UHGV-0070166_32	UniRef90	UniRef90_UPI0015D1AFF2	Ig-like domain-containing protein	NA
UHGV-0070166_32	eggNOG-mapper	435842.HMPREF0848_00198	Pilin isopeptide linkage domain protein	NA
UHGV-0070166_32	Pfam	PF17961	Bacterial Ig domain	Big_8
UHGV-0070166_32	Pfam	PF05737	Collagen binding domain	Collagen_bind
UHGV-0070166_32	NCBIFam	TIGR01167.1	LPXTG cell wall anchor domain-containing protein	NA
UHGV-0070166_32	COG	COG4932	Clumping factor A-related surface protein, MSCRAMM (microbial surface components recognizing adhesive matrix molecules) family, DEv-IgG fold	NA
UHGV-0070166_32	Structural annotation	PF05737, PF17961, NF000535	NA	NA
UHGV-0070166_34	PHROG	phrog_1456	DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0070166_34	UniRef90	UniRef90_A0A1V0H7Q4	Transcriptional regulator	NA
UHGV-0070166_34	eggNOG-mapper	1239381.K4JW96_9CAUD	calcium ion binding	NA
UHGV-0070166_34	Structural annotation	PF02002, MF_01909, NF040582, COG5625	NA	NA
UHGV-0070166_35	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0070166_35	PHROG	phrog_63	anti-repressor Ant	transcription regulation
UHGV-0070166_35	UniRef90	UniRef90_A0A1V0H8B8	Phage antirepressor Ant	NA
UHGV-0070166_35	eggNOG-mapper	1051631.F8HGQ0_9CAUD	DNA binding	NA
UHGV-0070166_35	Pfam	PF08346	AntA/AntB antirepressor	AntA
UHGV-0070166_35	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0070166_35	Structural annotation	PF03374, PF08346, TIGR02681, COG3561, COG3645	NA	NA
UHGV-0070166_36	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0070166_36	UniRef90	UniRef90_A0A2C5WCU3	Transcriptional regulator	NA
UHGV-0070166_36	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0070166_36	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0070166_36	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0070166_37	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0070166_37	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0070166_37	UniRef90	UniRef90_A0A1V0H7R2	Helix-turn-helix domain-containing protein	NA
UHGV-0070166_37	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0070166_37	Structural annotation	PF01381, MF_00535, NF041951, COG1396	NA	NA
UHGV-0070166_38	PHROG	phrog_87	metallo-protease	other
UHGV-0070166_38	UniRef90	UniRef90_A0A1V0H7S9	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0070166_38	eggNOG-mapper	1035189.HMPREF9954_1970	IrrE N-terminal-like domain	NA
UHGV-0070166_38	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0070166_38	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0070166_38	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0070166_39	PHROG	phrog_28808	NA	unknown function
UHGV-0070166_40	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0070166_40	PHROG	phrog_95	integrase	integration and excision
UHGV-0070166_40	UniRef90	UniRef90_A0A564TSP0	DNA-invertase hin	NA
UHGV-0070166_40	eggNOG-mapper	1123309.AQYB01000022_gene10	COG1961 Site-specific recombinases, DNA invertase Pin homologs	NA
UHGV-0070166_40	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0070166_40	Pfam	PF07508	Recombinase	Recombinase
UHGV-0070166_40	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0070166_40	Structural annotation	PF00239, PF07508, NF041201, COG1961	NA	NA