UHGV-0070208

Genome information

Genome length 23,621 bps

CDS count 33

Completeness 64.22% (medium-quality)

geNomad score 0.9773

Prediction confidence Confident

Genome information
Genome ID	UHGV-0070208
vOTU ID	vOTU-031548
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_106760
BioSample	SAMEA2452137
Country	Australia
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	64.22% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	12
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9773
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	30.27
Jumbo phage	No

Genome content
Genome length	23,621 bps
GC content	52.82%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	33
CDS density	88.41%
Average CDS length	635.27 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0070208_1	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0070208_1	PHROG	phrog_29443	NA	unknown function
UHGV-0070208_1	UniRef90	UniRef90_UPI001650A245	DNA cytosine methyltransferase	NA
UHGV-0070208_1	eggNOG-mapper	1397284.AYMN01000002_gene2288	C-5 cytosine-specific DNA methylase	NA
UHGV-0070208_1	PADLOC	MTase_II_00164	Type II methyltransferase	RM
UHGV-0070208_1	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0070208_1	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0070208_2	Pfam	PF13518	Helix-turn-helix domain	HTH_28
UHGV-0070208_2	Pfam	PF13936	Helix-turn-helix domain	HTH_38
UHGV-0070208_2	Structural annotation	PF13384, PF02796, NF040595, COG3415	NA	NA
UHGV-0070208_5	UniRef90	UniRef90_A0A143ZV08	Helix-turn-helix domain protein	NA
UHGV-0070208_5	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0070208_5	Structural annotation	PF12728, NF040990, COG3311	NA	NA
UHGV-0070208_6	PHROG	phrog_5079	NA	unknown function
UHGV-0070208_6	eggNOG-mapper	1341157.RF007C_05240	NA	NA
UHGV-0070208_7	UniRef90	UniRef90_R6S985	XRE family plasmid maintenance system antidote protein	NA
UHGV-0070208_7	eggNOG-mapper	1430331.EP10_02425	NA	NA
UHGV-0070208_7	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0070208_9	UniRef90	UniRef90_A0A396NP63	NA	NA
UHGV-0070208_9	eggNOG-mapper	887929.HMP0721_1290	Helix-turn-helix domain of resolvase	NA
UHGV-0070208_9	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-0070208_9	Structural annotation	PF05339, NF041951, COG3655	NA	NA
UHGV-0070208_10	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0070208_10	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-0070208_10	UniRef90	UniRef90_C0DAM1	DNA-binding helix-turn-helix protein	NA
UHGV-0070208_10	eggNOG-mapper	706434.HMPREF9429_00594	Helix-turn-helix XRE-family like proteins	NA
UHGV-0070208_10	PADLOC	Control_protein_00002	control protein	RM
UHGV-0070208_10	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0070208_10	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0070208_10	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0070208_11	PHROG	phrog_1914	NA	unknown function
UHGV-0070208_11	UniRef90	UniRef90_W0U704	Peptidase_M78 domain-containing protein	NA
UHGV-0070208_11	eggNOG-mapper	1160721.RBI_I01604	NA	NA
UHGV-0070208_11	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0070208_11	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0070208_13	KOfam	K14059	int; integrase	NA
UHGV-0070208_13	PHROG	phrog_1	integrase	integration and excision
UHGV-0070208_13	UniRef90	UniRef90_B0ML01	Site-specific recombinase, phage integrase family	NA
UHGV-0070208_13	eggNOG-mapper	641112.ACOK01000073_gene2860	Phage integrase family	NA
UHGV-0070208_13	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0070208_13	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0070208_13	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0070208_14	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0070208_14	PHROG	phrog_15001	endolysin	lysis
UHGV-0070208_14	UniRef90	UniRef90_R5H0D9	N-acetylmuramoyl-L-alanine amidase domain protein	NA
UHGV-0070208_14	eggNOG-mapper	1235835.C814_01292	Ami_2	NA
UHGV-0070208_14	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0070208_14	COG	COG1388	LysM repeat	NA
UHGV-0070208_14	Structural annotation	PF01510, MF_04111, NF008758, COG5632	NA	NA
UHGV-0070208_15	eggNOG-mapper	411470.RUMGNA_00254	NA	NA
UHGV-0070208_16	PHROG	phrog_1048	NA	unknown function
UHGV-0070208_16	UniRef90	UniRef90_A0A3N5HDD5	NA	NA
UHGV-0070208_16	eggNOG-mapper	1335230.S5VZM6_9CAUD	NA	NA
UHGV-0070208_16	Pfam	PF11195	NA	DUF2829
UHGV-0070208_16	dbAPIS	APIS029	Tad2 is a "sponge" that sequesters the immune signaling molecules produced by Thoeris TIR-domain proteins in response to phage.	NA
UHGV-0070208_16	Structural annotation	PF11195	NA	NA
UHGV-0070208_17	PHROG	phrog_1863	NA	unknown function
UHGV-0070208_17	eggNOG-mapper	1203606.HMPREF1526_02027	NA	NA
UHGV-0070208_19	PHROG	phrog_6616	tail protein	tail
UHGV-0070208_19	eggNOG-mapper	1395587.P364_0122010	NA	NA
UHGV-0070208_19	Structural annotation	PF14594, NF033848, COG3500	NA	NA
UHGV-0070208_20	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0070208_21	PHROG	phrog_1272	tail length tape measure protein	tail
UHGV-0070208_21	UniRef90	UniRef90_A0A174ZXN5	Phage-related minor tail protein	NA
UHGV-0070208_21	eggNOG-mapper	573061.Clocel_3533	tail tape measure protein	NA
UHGV-0070208_21	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0070208_21	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0070208_21	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0070208_22	PHROG	phrog_1021	NA	unknown function
UHGV-0070208_22	eggNOG-mapper	545243.BAEV01000033_gene538	NA	NA
UHGV-0070208_23	PHROG	phrog_885	major tail protein	tail
UHGV-0070208_23	UniRef90	UniRef90_UPI00164A9E72	chitobiase/beta-hexosaminidase C-terminal domain-containing protein	NA
UHGV-0070208_23	eggNOG-mapper	457396.CSBG_01054	Chitobiase/beta-hexosaminidase C-terminal domain	NA
UHGV-0070208_23	COG	COG2273	Beta-glucanase, GH16 family	NA
UHGV-0070208_23	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-0070208_25	UniRef90	UniRef90_UPI001A9B6FBF	HK97 gp10 family phage protein	NA
UHGV-0070208_25	eggNOG-mapper	457396.CSBG_01052	NA	NA
UHGV-0070208_25	Structural annotation	TIGR01725	NA	NA
UHGV-0070208_26	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-0070208_26	UniRef90	UniRef90_A0A1K1MQ38	Phage head-tail adaptor, putative, SPP1 family	NA
UHGV-0070208_26	eggNOG-mapper	644007.C5J966_9CAUD	NA	NA
UHGV-0070208_26	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0070208_26	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0070208_27	PHROG	phrog_5223	neck protein	connector
UHGV-0070208_27	UniRef90	UniRef90_UPI000486A1D9	head-tail connector protein	NA
UHGV-0070208_27	eggNOG-mapper	1382358.JHVN01000024_gene1709	NA	NA
UHGV-0070208_27	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0070208_27	Structural annotation	TIGR01560	NA	NA
UHGV-0070208_28	PHROG	phrog_10	major head protein	head and packaging
UHGV-0070208_28	UniRef90	UniRef90_A0A844FEP6	Phage major capsid protein	NA
UHGV-0070208_28	eggNOG-mapper	1280689.AUJC01000011_gene1521	Phage major capsid protein, HK97 family	NA
UHGV-0070208_28	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0070208_28	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0070208_28	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0070208_28	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0070208_29	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0070208_29	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0070208_29	UniRef90	UniRef90_A0A7X2P7H4	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0070208_29	eggNOG-mapper	1203606.HMPREF1526_00979	Belongs to the peptidase S14 family	NA
UHGV-0070208_29	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0070208_29	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0070208_29	Structural annotation	PF00574, MF_00444, NF011091, COG0740	NA	NA
UHGV-0070208_30	PHROG	phrog_12	portal protein	head and packaging
UHGV-0070208_30	UniRef90	UniRef90_UPI001782823A	phage portal protein	NA
UHGV-0070208_30	eggNOG-mapper	318464.IO99_13760	Portal protein	NA
UHGV-0070208_30	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0070208_30	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0070208_30	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0070208_31	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0070208_31	UniRef90	UniRef90_UPI001D07C789	terminase large subunit	NA
UHGV-0070208_31	eggNOG-mapper	1203606.HMPREF1526_00981	Terminase	NA
UHGV-0070208_31	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0070208_31	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0070208_31	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0070208_31	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0070208_32	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0070208_32	PHROG	phrog_67	DNA methyltransferase	other
UHGV-0070208_32	UniRef90	UniRef90_UPI0008A83D5F	site-specific DNA-methyltransferase	NA
UHGV-0070208_32	eggNOG-mapper	1508644.SFBmNL_00843	Belongs to the N(4) N(6)-methyltransferase family	NA
UHGV-0070208_32	PADLOC	MTase_II_00085	Type II methyltransferase	RM
UHGV-0070208_32	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0070208_32	COG	COG2189	Adenine specific DNA methylase Mod	NA
UHGV-0070208_33	PHROG	phrog_1066	NA	unknown function
UHGV-0070208_33	eggNOG-mapper	1203606.HMPREF1526_00982	NA	NA