UHGV-0070246

Genome information

Genome length 22,608 bps

CDS count 47

Completeness 56.12% (medium-quality)

geNomad score 0.9821

Prediction confidence Confident

Genome information
Genome ID	UHGV-0070246
vOTU ID	vOTU-021674
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_111969
BioSample	SAMEA2580074
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	56.12% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9821
Virus hallmark genes (geNomad)	4
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	21.06
Jumbo phage	No

Genome content
Genome length	22,608 bps
GC content	58.43%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	47
CDS density	93.70%
Average CDS length	454.02 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0070246_1	eggNOG-mapper	78346.BRUM_0425	NA	NA
UHGV-0070246_2	PHROG	phrog_18591	NA	unknown function
UHGV-0070246_2	eggNOG-mapper	78346.BRUM_0424	NA	NA
UHGV-0070246_3	UniRef90	UniRef90_A0A076JPS5	Cell surface protein	NA
UHGV-0070246_3	eggNOG-mapper	1680.BADO_1275	NA	NA
UHGV-0070246_4	PHROG	phrog_87	metallo-protease	other
UHGV-0070246_4	UniRef90	UniRef90_UPI001CF991EA	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0070246_4	eggNOG-mapper	1435051.BMOU_0747	NA	NA
UHGV-0070246_4	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0070246_4	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0070246_5	UniRef90	UniRef90_A0A3E5HJH1	XRE family transcriptional regulator	NA
UHGV-0070246_5	eggNOG-mapper	1435051.BMOU_0746	NA	NA
UHGV-0070246_5	Structural annotation	PF01381, MF_00535, NF041951, COG3655	NA	NA
UHGV-0070246_6	UniRef90	UniRef90_UPI001CFDF36A	anhydro-N-acetylmuramyl-tripeptide amidase	NA
UHGV-0070246_7	PHROG	phrog_4583	transcriptional repressor	transcription regulation
UHGV-0070246_7	UniRef90	UniRef90_A0A174BZI9	The helix-turn-helix motif	NA
UHGV-0070246_7	eggNOG-mapper	78345.BMERY_0907	NA	NA
UHGV-0070246_7	Structural annotation	PF08667, MF_00535, NF041951, COG3093	NA	NA
UHGV-0070246_9	Structural annotation	PF19824, NF009256	NA	NA
UHGV-0070246_10	eggNOG-mapper	78346.BRUM_0417	NA	NA
UHGV-0070246_10	Structural annotation	PF12989	NA	NA
UHGV-0070246_11	eggNOG-mapper	78346.BRUM_0416	NA	NA
UHGV-0070246_12	UniRef90	UniRef90_D4BRT8	HTH_17 domain-containing protein	NA
UHGV-0070246_12	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0070246_12	Structural annotation	PF12728, TIGR01764, COG3311	NA	NA
UHGV-0070246_13	UniRef90	UniRef90_A0A6B8LMI6	Hypoyhetical protein	NA
UHGV-0070246_14	UniRef90	UniRef90_UPI001F0F0E30	helix-turn-helix domain-containing protein	NA
UHGV-0070246_14	Structural annotation	PF01047	NA	NA
UHGV-0070246_16	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0070246_16	UniRef90	UniRef90_A0A564S1W6	YqaJ domain-containing protein	NA
UHGV-0070246_16	eggNOG-mapper	1437610.BREU_1416	YqaJ-like viral recombinase domain	NA
UHGV-0070246_16	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-0070246_16	NCBIFam	TIGR03033.1	putative phage-type endonuclease	NA
UHGV-0070246_16	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-0070246_16	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-0070246_17	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0070246_17	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0070246_17	UniRef90	UniRef90_A0A564S321	Protein RecT	NA
UHGV-0070246_17	eggNOG-mapper	1341695.BBOMB_1056	RecT family	NA
UHGV-0070246_17	Pfam	PF03837	RecT family	RecT
UHGV-0070246_17	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-0070246_17	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0070246_17	Structural annotation	PF03837, NF007351, COG3723	NA	NA
UHGV-0070246_19	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0070246_19	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0070246_19	UniRef90	UniRef90_UPI001CFB635D	single-stranded DNA-binding protein	NA
UHGV-0070246_19	eggNOG-mapper	78346.BRUM_0409	Single-strand binding protein family	NA
UHGV-0070246_19	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0070246_19	NCBIFam	NF005851.0	single-stranded DNA-binding protein	NA
UHGV-0070246_19	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0070246_19	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0070246_19	Structural annotation	PF00436, MF_00984, NF005851, COG2965	NA	NA
UHGV-0070246_20	UniRef90	UniRef90_A0A7J5NIE0	Ferredoxin	NA
UHGV-0070246_21	PHROG	phrog_244	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0070246_21	UniRef90	UniRef90_A0A1X2ZJJ9	NA	NA
UHGV-0070246_21	eggNOG-mapper	1193128.A200_07809	NA	NA
UHGV-0070246_21	Structural annotation	PF13588, COG1591	NA	NA
UHGV-0070246_22	UniRef90	UniRef90_A0A1X2ZKC5	Transposase	NA
UHGV-0070246_22	eggNOG-mapper	78346.BRUM_0407	NA	NA
UHGV-0070246_22	Structural annotation	PF01815	NA	NA
UHGV-0070246_23	UniRef90	UniRef90_A0A1X2Z168	Tryptophan halogenase	NA
UHGV-0070246_24	eggNOG-mapper	1394176.AWUO01000011_gene389	NA	NA
UHGV-0070246_24	Structural annotation	PF06319, NF033832, COG5321	NA	NA
UHGV-0070246_26	UniRef90	UniRef90_UPI001CFBB2F5	zinc ribbon domain-containing protein	NA
UHGV-0070246_27	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0070246_27	PHROG	phrog_16726	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0070246_27	UniRef90	UniRef90_A0A174C1V7	Endonuclease	NA
UHGV-0070246_27	eggNOG-mapper	105422.BBPM01000058_gene4617	HNH endonuclease	NA
UHGV-0070246_27	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0070246_27	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0070246_28	PHROG	phrog_2447	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0070246_28	eggNOG-mapper	78346.BRUM_0405	NA	NA
UHGV-0070246_28	Structural annotation	PF09681, TIGR01714	NA	NA
UHGV-0070246_29	UniRef90	UniRef90_A0A072MSY3	GTP-binding protein	NA
UHGV-0070246_31	PHROG	phrog_3641	NA	unknown function
UHGV-0070246_31	eggNOG-mapper	398513.BBNG_00833	NA	NA
UHGV-0070246_33	UniRef90	UniRef90_A0A412K9M9	Antitoxin	NA
UHGV-0070246_33	eggNOG-mapper	78346.BRUM_0403	NA	NA
UHGV-0070246_34	PHROG	phrog_908	NA	unknown function
UHGV-0070246_34	UniRef90	UniRef90_UPI001EF668C6	PhnA protein	NA
UHGV-0070246_34	eggNOG-mapper	78346.BRUM_0402	NA	NA
UHGV-0070246_34	Structural annotation	COG0789	NA	NA
UHGV-0070246_35	UniRef90	UniRef90_A0A6B8LMD9	Hypoyhetical protein	NA
UHGV-0070246_36	PHROG	phrog_226	minor tail protein	tail
UHGV-0070246_36	UniRef90	UniRef90_A0A3G3M4U7	Terminase small subunit	NA
UHGV-0070246_36	eggNOG-mapper	1437603.BMON_0142	NA	NA
UHGV-0070246_37	PHROG	phrog_19179	terminase large subunit	head and packaging
UHGV-0070246_37	UniRef90	UniRef90_A0A087CAG9	Gp22	NA
UHGV-0070246_37	eggNOG-mapper	1437603.BMON_0141	Terminase	NA
UHGV-0070246_37	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0070246_37	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0070246_38	PHROG	phrog_104	portal protein	head and packaging
UHGV-0070246_38	UniRef90	UniRef90_A0A087DRQ5	Phage portal protein gp6-like protein	NA
UHGV-0070246_38	eggNOG-mapper	1437603.BMON_0140	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0070246_38	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0070246_38	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0070246_39	PHROG	phrog_1522	head maturation protease	head and packaging
UHGV-0070246_39	UniRef90	UniRef90_A0A8A9ICF6	CdiA_C domain-containing protein	NA
UHGV-0070246_39	eggNOG-mapper	1437603.BMON_0139	NA	NA
UHGV-0070246_40	PHROG	phrog_1793	head scaffolding protein	head and packaging
UHGV-0070246_40	UniRef90	UniRef90_UPI001115A562	NA	NA
UHGV-0070246_40	eggNOG-mapper	1437603.BMON_0138	NA	NA
UHGV-0070246_41	PHROG	phrog_212	major head protein	head and packaging
UHGV-0070246_41	UniRef90	UniRef90_UPI001038A13F	phage capsid protein	NA
UHGV-0070246_41	eggNOG-mapper	1437603.BMON_0137	NA	NA
UHGV-0070246_41	Structural annotation	PF05065, MF_04119, NF041162, COG4653	NA	NA
UHGV-0070246_42	PHROG	phrog_15682	NA	unknown function
UHGV-0070246_42	eggNOG-mapper	1122918.KB907248_gene4497	NA	NA
UHGV-0070246_43	UniRef90	UniRef90_I3BBX9	Head fiber domain protein	NA
UHGV-0070246_44	PHROG	phrog_137	head-tail adaptor Ad1	connector
UHGV-0070246_44	UniRef90	UniRef90_I3BBT3	Phage protein Gp19/Gp15/Gp42	NA
UHGV-0070246_44	eggNOG-mapper	1437603.BMON_0136	Phage protein Gp19/Gp15/Gp42	NA
UHGV-0070246_44	Pfam	PF09355	NA	Phage_Gp19
UHGV-0070246_44	Structural annotation	PF09355	NA	NA
UHGV-0070246_45	PHROG	phrog_13779	NA	unknown function
UHGV-0070246_45	UniRef90	UniRef90_UPI00192840F4	NA	NA
UHGV-0070246_45	eggNOG-mapper	1680.BADO_1238	NA	NA
UHGV-0070246_45	Pfam	PF19586	NA	DUF6093
UHGV-0070246_45	Structural annotation	PF19586, TIGR01563, COG5614	NA	NA
UHGV-0070246_46	PHROG	phrog_19109	NA	unknown function
UHGV-0070246_46	eggNOG-mapper	1680.BADO_1237	NA	NA
UHGV-0070246_46	Structural annotation	TIGR01725	NA	NA
UHGV-0070246_47	UniRef90	UniRef90_A0A3E5HKK5	Transcriptional regulator	NA
UHGV-0070246_47	eggNOG-mapper	1680.BADO_1236	NA	NA
UHGV-0070246_47	Structural annotation	PF06141	NA	NA