UHGV-0070300

Genome information

Genome length 22,034 bps

CDS count 39

Completeness 53.10% (medium-quality)

geNomad score 0.9725

Prediction confidence Confident

Genome information
Genome ID	UHGV-0070300
vOTU ID	vOTU-030008
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_133792
BioSample	SAMEA2737815
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	53.10% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	6
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9725
Virus hallmark genes (geNomad)	2
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Uncertain - viral or bacterial
viralVerify score	2.2
Jumbo phage	No

Genome content
Genome length	22,034 bps
GC content	43.98%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	39
CDS density	92.31%
Average CDS length	525.31 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0070300_2	eggNOG-mapper	610130.Closa_0759	NA	NA
UHGV-0070300_3	PHROG	phrog_25888	NA	unknown function
UHGV-0070300_3	eggNOG-mapper	1304866.K413DRAFT_1240	NA	NA
UHGV-0070300_3	Structural annotation	PF10651, COG3470	NA	NA
UHGV-0070300_4	PHROG	phrog_15239	NA	unknown function
UHGV-0070300_4	eggNOG-mapper	1507.HMPREF0262_03462	NA	NA
UHGV-0070300_5	PHROG	phrog_1357	major head protein	head and packaging
UHGV-0070300_5	UniRef90	UniRef90_A0A416JW11	N4-gp56 family major capsid protein	NA
UHGV-0070300_5	eggNOG-mapper	1203606.HMPREF1526_02746	NA	NA
UHGV-0070300_5	Pfam	PF13252	NA	DUF4043
UHGV-0070300_5	NCBIFam	TIGR04387.1	N4-gp56 family major capsid protein	NA
UHGV-0070300_5	Structural annotation	PF13252, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0070300_6	PHROG	phrog_13908	NA	unknown function
UHGV-0070300_6	eggNOG-mapper	1410650.JHWL01000003_gene2831	NA	NA
UHGV-0070300_7	KOfam	K07584	NA	NA
UHGV-0070300_7	PHROG	phrog_4478	peptidase	other
UHGV-0070300_7	UniRef90	UniRef90_A0A416JW56	Ribosomal-processing cysteine protease Prp	NA
UHGV-0070300_7	eggNOG-mapper	1449126.JQKL01000003_gene1697	Cysteine protease Prp	NA
UHGV-0070300_7	Pfam	PF04327	Cysteine protease Prp	Peptidase_Prp
UHGV-0070300_7	COG	COG2868	NA	NA
UHGV-0070300_8	PHROG	phrog_156	portal protein	head and packaging
UHGV-0070300_8	UniRef90	UniRef90_A0A8D9UH10	Portal protein	NA
UHGV-0070300_8	eggNOG-mapper	748224.HMPREF9436_01396	NA	NA
UHGV-0070300_8	Structural annotation	PF16510, MF_04120, TIGR01538, COG4383	NA	NA
UHGV-0070300_9	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0070300_9	PHROG	phrog_979	terminase large subunit	head and packaging
UHGV-0070300_9	UniRef90	UniRef90_A0A416JVL2	Terminase-like family protein	NA
UHGV-0070300_9	eggNOG-mapper	657322.FPR_02290	Terminase-like family	NA
UHGV-0070300_9	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0070300_9	COG	COG1783	Phage terminase large subunit	NA
UHGV-0070300_9	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0070300_10	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0070300_10	PHROG	phrog_2606	terminase small subunit	head and packaging
UHGV-0070300_10	UniRef90	UniRef90_A0A416JVZ3	Phage portal protein	NA
UHGV-0070300_10	eggNOG-mapper	478749.BRYFOR_07604	terminase, small subunit	NA
UHGV-0070300_10	Pfam	PF13384	Homeodomain-like domain	HTH_23
UHGV-0070300_10	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0070300_10	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0070300_14	Structural annotation	PF10694	NA	NA
UHGV-0070300_16	UniRef90	UniRef90_A0A373CTS1	NA	NA
UHGV-0070300_16	eggNOG-mapper	1256908.HMPREF0373_00667	NA	NA
UHGV-0070300_16	Pfam	PF04448	NA	DUF551
UHGV-0070300_16	Structural annotation	NF041588	NA	NA
UHGV-0070300_17	PHROG	phrog_16126	NA	unknown function
UHGV-0070300_18	KOfam	K03427	hsdM; type I restriction enzyme M protein [EC:2.1.1.72]	NA
UHGV-0070300_18	PHROG	phrog_5696	NA	unknown function
UHGV-0070300_18	UniRef90	UniRef90_A0A8E3SKS1	N-6 DNA methylase	NA
UHGV-0070300_18	eggNOG-mapper	637911.AM305_07728	N-6 DNA Methylase	NA
UHGV-0070300_18	Pfam	PF02384	N-6 DNA Methylase	N6_Mtase
UHGV-0070300_18	COG	COG0286	Type I restriction-modification system, DNA methylase subunit	NA
UHGV-0070300_18	Structural annotation	COG0286	NA	NA
UHGV-0070300_19	PHROG	phrog_25231	NA	unknown function
UHGV-0070300_20	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0070300_20	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0070300_20	UniRef90	UniRef90_A0A416JWE5	Single-stranded DNA-binding protein	NA
UHGV-0070300_20	eggNOG-mapper	1304866.K413DRAFT_1332	Single-stranded DNA-binding protein	NA
UHGV-0070300_20	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0070300_20	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0070300_20	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0070300_20	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0070300_21	KOfam	K03469	rnhA, RNASEH1; ribonuclease HI [EC:3.1.26.4]	NA
UHGV-0070300_21	PHROG	phrog_531	Rnase H	DNA, RNA and nucleotide metabolism
UHGV-0070300_21	UniRef90	UniRef90_A0A416JW23	RNase H type-1 domain-containing protein	NA
UHGV-0070300_21	eggNOG-mapper	546414.Deide_07460	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids	NA
UHGV-0070300_21	Pfam	PF00075	RNase H	RNase_H
UHGV-0070300_21	COG	COG0328	Ribonuclease HI	NA
UHGV-0070300_21	Structural annotation	PF00075, MF_00042, NF001236, COG0328	NA	NA
UHGV-0070300_22	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0070300_22	eggNOG-mapper	97139.C824_06117	NA	NA
UHGV-0070300_22	Structural annotation	PF01446	NA	NA
UHGV-0070300_24	PHROG	phrog_4292	NA	unknown function
UHGV-0070300_28	UniRef90	UniRef90_W1I9L5	Uncultured bacterium extrachromosomal DNA RGF00085	NA
UHGV-0070300_29	Structural annotation	PF10743, TIGR01764, COG4220	NA	NA
UHGV-0070300_32	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0070300_32	UniRef90	UniRef90_A0A3D5WRG0	XRE family transcriptional regulator	NA
UHGV-0070300_32	eggNOG-mapper	387344.LVIS_1596	Helix-turn-helix XRE-family like proteins	NA
UHGV-0070300_32	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0070300_32	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0070300_32	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0070300_33	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-0070300_33	UniRef90	UniRef90_A0A1C5S0D9	Helix-turn-helix	NA
UHGV-0070300_33	eggNOG-mapper	1235798.C817_00620	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0070300_33	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0070300_33	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0070300_33	Structural annotation	PF12844, NF041951, COG1396	NA	NA
UHGV-0070300_34	PHROG	phrog_87	metallo-protease	other
UHGV-0070300_34	UniRef90	UniRef90_A0A0E2HGD5	Peptidase_M78 domain-containing protein	NA
UHGV-0070300_34	eggNOG-mapper	1235802.C823_04751	IrrE N-terminal-like domain	NA
UHGV-0070300_34	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0070300_34	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0070300_34	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0070300_35	KOfam	K07171	mazF, ndoA, chpA; mRNA interferase MazF [EC:3.1.-.-]	NA
UHGV-0070300_35	PHROG	phrog_1412	antitoxin mazE-like	moron, auxiliary metabolic gene and host takeover
UHGV-0070300_35	UniRef90	UniRef90_A0A8E3MXQ3	Type II toxin-antitoxin system PemK/MazF family toxin	NA
UHGV-0070300_35	eggNOG-mapper	1235792.C808_05257	Toxic component of a toxin-antitoxin (TA) module	NA
UHGV-0070300_35	Pfam	PF02452	PemK-like, MazF-like toxin of type II toxin-antitoxin system	PemK_toxin
UHGV-0070300_35	COG	COG2337	mRNA-degrading endonuclease MazF, toxin component of the MazEF toxin-antitoxin module	NA
UHGV-0070300_35	Structural annotation	PF02452, NF007386, COG2337	NA	NA
UHGV-0070300_36	KOfam	K14059	int; integrase	NA
UHGV-0070300_36	PHROG	phrog_1	integrase	integration and excision
UHGV-0070300_36	UniRef90	UniRef90_A0A416JWB4	Integrase	NA
UHGV-0070300_36	eggNOG-mapper	1235792.C808_04693	Belongs to the 'phage' integrase family	NA
UHGV-0070300_36	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0070300_36	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-0070300_37	UniRef90	UniRef90_A0A564SIH0	Glyoxalase domain-containing protein	NA
UHGV-0070300_37	eggNOG-mapper	411459.RUMOBE_01952	NA	NA
UHGV-0070300_37	Pfam	PF00903	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily	Glyoxalase
UHGV-0070300_37	COG	COG0346	Catechol 2,3-dioxygenase or related enzyme, vicinal oxygen chelate (VOC) family	NA
UHGV-0070300_38	KOfam	K01462	PDF, def; peptide deformylase [EC:3.5.1.88]	NA
UHGV-0070300_38	PHROG	phrog_2890	peptide deformylase	other
UHGV-0070300_38	UniRef90	UniRef90_A0A174B451	Peptide deformylase	NA
UHGV-0070300_38	eggNOG-mapper	411459.RUMOBE_01951	Removes the formyl group from the N-terminal Met of newly synthesized proteins	NA
UHGV-0070300_38	Pfam	PF01327	Polypeptide deformylase	Pep_deformylase
UHGV-0070300_38	NCBIFam	NF006670.0	peptide deformylase	NA
UHGV-0070300_38	COG	COG0242	Peptide deformylase	NA
UHGV-0070300_38	Structural annotation	PF01327, MF_00163, NF006670, COG0242	NA	NA
UHGV-0070300_39	UniRef90	UniRef90_A0A415LNA5	Multidrug transporter	NA
UHGV-0070300_39	eggNOG-mapper	1410626.JHXB01000008_gene1187	NA	NA