UHGV-0070308

Genome information

Genome length 30,992 bps

CDS count 52

Completeness 90.09% (high-quality)

geNomad score 0.9818

Prediction confidence Confident

Genome information
Genome ID	UHGV-0070308
vOTU ID	vOTU-075468
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_121182
BioSample	SAMEA2580152
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	90.09% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	23
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9818
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	41.99
Jumbo phage	No

Genome content
Genome length	30,992 bps
GC content	36.67%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	52
CDS density	94.93%
Average CDS length	568.67 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0070308_1	PHROG	phrog_4583	transcriptional repressor	transcription regulation
UHGV-0070308_1	UniRef90	UniRef90_A0A174WQM8	Helix-turn-helix domain-containing protein	NA
UHGV-0070308_1	eggNOG-mapper	1145276.T479_16435	NA	NA
UHGV-0070308_1	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0070308_2	PHROG	phrog_11717	NA	unknown function
UHGV-0070308_2	eggNOG-mapper	508419.F8J181_9CAUD	NA	NA
UHGV-0070308_2	Structural annotation	PF06420, TIGR00607, COG4712	NA	NA
UHGV-0070308_5	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0070308_5	UniRef90	UniRef90_A0A843H617	Siphovirus Gp157 family protein	NA
UHGV-0070308_5	eggNOG-mapper	411470.RUMGNA_02192	Siphovirus Gp157	NA
UHGV-0070308_5	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-0070308_5	Structural annotation	PF05565	NA	NA
UHGV-0070308_7	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0070308_7	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0070308_7	UniRef90	UniRef90_A5Z4B4	Single-stranded DNA-binding protein	NA
UHGV-0070308_7	eggNOG-mapper	411463.EUBVEN_00539	Single-stranded DNA-binding protein	NA
UHGV-0070308_7	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0070308_7	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0070308_7	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0070308_7	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0070308_7	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0070308_8	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0070308_8	eggNOG-mapper	1304866.K413DRAFT_1197	NA	NA
UHGV-0070308_8	Structural annotation	PF05772, NF007281	NA	NA
UHGV-0070308_9	PHROG	phrog_7566	NA	unknown function
UHGV-0070308_9	UniRef90	UniRef90_A0A371ATG2	Phosphoenolpyruvate carboxykinase	NA
UHGV-0070308_9	eggNOG-mapper	508419.F8J187_9CAUD	NA	NA
UHGV-0070308_10	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0070308_10	PHROG	phrog_1682	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0070308_10	UniRef90	UniRef90_R7FGZ0	Gp63	NA
UHGV-0070308_10	eggNOG-mapper	428125.CLOLEP_01819	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC	NA
UHGV-0070308_10	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0070308_10	Structural annotation	PF19595, NF007305, COG4570	NA	NA
UHGV-0070308_11	PHROG	phrog_1123	NA	unknown function
UHGV-0070308_11	UniRef90	UniRef90_UPI0012E37870	DNA gyrase	NA
UHGV-0070308_11	eggNOG-mapper	445972.ANACOL_03346	NA	NA
UHGV-0070308_11	Structural annotation	PF03551, TIGR02719, COG1695	NA	NA
UHGV-0070308_12	PHROG	phrog_5968	replisome organizer	DNA, RNA and nucleotide metabolism
UHGV-0070308_12	UniRef90	UniRef90_A0A173W897	Phage replisome organizer, putative, N-terminal region	NA
UHGV-0070308_12	eggNOG-mapper	702450.CUW_0518	Phage replisome organizer N-terminal	NA
UHGV-0070308_12	Pfam	PF09681	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
UHGV-0070308_12	NCBIFam	TIGR01714.1	phage replisome organizer, putative, N-terminal region	NA
UHGV-0070308_12	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0070308_12	Structural annotation	PF09681, TIGR01714, COG3756	NA	NA
UHGV-0070308_13	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0070308_13	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0070308_13	UniRef90	UniRef90_A0A173RED2	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0070308_13	eggNOG-mapper	397290.C810_05213	C-5 cytosine-specific DNA methylase	NA
UHGV-0070308_13	PADLOC	MTase_II_00058	Type II methyltransferase	RM
UHGV-0070308_13	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0070308_13	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0070308_13	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0070308_13	Structural annotation	PF00145, MF_00786, TIGR00675, COG0270	NA	NA
UHGV-0070308_14	PHROG	phrog_5070	NA	unknown function
UHGV-0070308_14	UniRef90	UniRef90_C6L9Y5	Bacterial transferase hexapeptide repeat protein	NA
UHGV-0070308_14	eggNOG-mapper	411470.RUMGNA_02189	Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell	NA
UHGV-0070308_14	Pfam	PF18836	YdcK Beta solenoid repeat	B_solenoid_ydck
UHGV-0070308_14	COG	COG1044	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase	NA
UHGV-0070308_15	PHROG	phrog_21026	NA	unknown function
UHGV-0070308_17	eggNOG-mapper	411461.DORFOR_01156	NA	NA
UHGV-0070308_17	Structural annotation	PF06319, NF033832, COG5321	NA	NA
UHGV-0070308_20	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0070308_20	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0070308_20	UniRef90	UniRef90_A0A6B9SRH5	DNA replication protein	NA
UHGV-0070308_20	eggNOG-mapper	203119.Cthe_2467	IstB-like ATP binding protein	NA
UHGV-0070308_20	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-0070308_20	NCBIFam	NF005992.0	hypothetical protein	NA
UHGV-0070308_20	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0070308_20	Structural annotation	PF01695, MF_01919, NF005992, COG1484	NA	NA
UHGV-0070308_25	Structural annotation	PF16535, PF04545	NA	NA
UHGV-0070308_26	PHROG	phrog_1299	holin	lysis
UHGV-0070308_26	UniRef90	UniRef90_F7V9E9	Putative holin	NA
UHGV-0070308_26	eggNOG-mapper	1399942.U3PFZ7_9CAUD	NA	NA
UHGV-0070308_26	Structural annotation	PF06946	NA	NA
UHGV-0070308_27	KOfam	K07273	acm; lysozyme	NA
UHGV-0070308_27	PHROG	phrog_291	endolysin	lysis
UHGV-0070308_27	UniRef90	UniRef90_UPI0008713C11	peptidoglycan-binding protein	NA
UHGV-0070308_27	eggNOG-mapper	1120978.KB894083_gene891	Pfam:Cpl-7	NA
UHGV-0070308_27	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0070308_27	Pfam	PF01476	LysM domain	LysM
UHGV-0070308_27	COG	COG1388	LysM repeat	NA
UHGV-0070308_27	Structural annotation	PF01183, PF01476, TIGR02899, COG3757, COG1388	NA	NA
UHGV-0070308_28	PHROG	phrog_918	NA	unknown function
UHGV-0070308_28	UniRef90	UniRef90_UPI00195F2652	NA	NA
UHGV-0070308_28	eggNOG-mapper	469618.FVAG_01307	NA	NA
UHGV-0070308_28	Pfam	PF19791	NA	DUF6275
UHGV-0070308_28	Structural annotation	PF19791	NA	NA
UHGV-0070308_29	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0070308_29	UniRef90	UniRef90_I2E873	HNHc domain-containing protein (Fragment)	NA
UHGV-0070308_29	eggNOG-mapper	1399942.U3PDW1_9CAUD	HNH endonuclease	NA
UHGV-0070308_29	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0070308_30	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0070308_30	PHROG	phrog_620	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0070308_30	UniRef90	UniRef90_UPI001D072549	ParB N-terminal domain-containing protein	NA
UHGV-0070308_30	eggNOG-mapper	1487921.DP68_08835	Belongs to the N(4) N(6)-methyltransferase family	NA
UHGV-0070308_30	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-0070308_30	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0070308_30	COG	COG0863	DNA modification methylase	NA
UHGV-0070308_31	PHROG	phrog_8680	NA	unknown function
UHGV-0070308_31	UniRef90	UniRef90_G9WTK6	ParB domain-containing protein	NA
UHGV-0070308_31	eggNOG-mapper	1232449.BAHV02000018_gene1534	NA	NA
UHGV-0070308_31	Pfam	PF14386	NA	DUF4417
UHGV-0070308_31	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0070308_31	Structural annotation	PF14386	NA	NA
UHGV-0070308_32	PHROG	phrog_5234	NA	unknown function
UHGV-0070308_32	UniRef90	UniRef90_UPI0009F38737	toxin glutamine deamidase domain-containing protein	NA
UHGV-0070308_32	eggNOG-mapper	697281.Mahau_0569	NA	NA
UHGV-0070308_32	Pfam	PF15644	Papain fold toxin 1, glutamine deamidase	Gln_amidase
UHGV-0070308_32	Structural annotation	PF15644, NF011786	NA	NA
UHGV-0070308_34	PHROG	phrog_13845	NA	unknown function
UHGV-0070308_34	eggNOG-mapper	1399942.U3PDR2_9CAUD	NA	NA
UHGV-0070308_34	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0070308_35	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0070308_35	UniRef90	UniRef90_A0A075KKZ0	Putative terminase large subunit	NA
UHGV-0070308_35	eggNOG-mapper	508419.F8J159_9CAUD	Phage Terminase	NA
UHGV-0070308_35	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0070308_35	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0070308_35	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0070308_36	PHROG	phrog_12	portal protein	head and packaging
UHGV-0070308_36	UniRef90	UniRef90_A0A075KQ80	Putative portal protein	NA
UHGV-0070308_36	eggNOG-mapper	508419.F8J160_9CAUD	Phage portal protein	NA
UHGV-0070308_36	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0070308_36	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0070308_36	Structural annotation	PF04860, PF08184, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0070308_37	KOfam	K06904	NA	NA
UHGV-0070308_37	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0070308_37	UniRef90	UniRef90_A0A843HVM4	HK97 family phage prohead protease	NA
UHGV-0070308_37	eggNOG-mapper	1399942.U3PIW1_9CAUD	peptidase activity	NA
UHGV-0070308_37	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0070308_37	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0070308_37	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0070308_38	PHROG	phrog_10	major head protein	head and packaging
UHGV-0070308_38	UniRef90	UniRef90_A0A075KK19	Putative major head protein	NA
UHGV-0070308_38	eggNOG-mapper	1399942.U3PDR8_9CAUD	peptidase activity	NA
UHGV-0070308_38	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0070308_38	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0070308_38	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0070308_39	PHROG	phrog_6865	NA	unknown function
UHGV-0070308_39	eggNOG-mapper	1399942.U3PBG9_9CAUD	NA	NA
UHGV-0070308_40	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-0070308_40	UniRef90	UniRef90_UPI001BA8BAD6	head-tail connector protein	NA
UHGV-0070308_40	eggNOG-mapper	1399942.U3PCS3_9CAUD	NA	NA
UHGV-0070308_40	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0070308_40	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0070308_41	PHROG	phrog_25	head closure Hc1	connector
UHGV-0070308_41	UniRef90	UniRef90_A0A843I196	Phage head closure protein	NA
UHGV-0070308_41	eggNOG-mapper	508419.F8J165_9CAUD	Phage head-tail joining protein	NA
UHGV-0070308_41	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0070308_41	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0070308_41	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0070308_42	UniRef90	UniRef90_A0A843HUI9	HK97 gp10 family phage protein	NA
UHGV-0070308_42	eggNOG-mapper	508419.F8J166_9CAUD	NA	NA
UHGV-0070308_42	Structural annotation	TIGR01725	NA	NA
UHGV-0070308_43	PHROG	phrog_78	tail terminator	connector
UHGV-0070308_43	UniRef90	UniRef90_UPI001C54EC97	NA	NA
UHGV-0070308_43	eggNOG-mapper	1399942.U3PDS3_9CAUD	NA	NA
UHGV-0070308_43	Structural annotation	PF05657	NA	NA
UHGV-0070308_44	PHROG	phrog_88	major tail protein	tail
UHGV-0070308_44	UniRef90	UniRef90_A0A075KJR8	Putative major tail protein	NA
UHGV-0070308_44	eggNOG-mapper	1399942.U3PBH4_9CAUD	NA	NA
UHGV-0070308_44	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0070308_44	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0070308_45	PHROG	phrog_2115	tail protein	tail
UHGV-0070308_45	eggNOG-mapper	1399942.U3PCS7_9CAUD	NA	NA
UHGV-0070308_45	Structural annotation	PF11836	NA	NA
UHGV-0070308_47	KOfam	K16464	CEP250, CNAP1; centrosomal protein CEP250	NA
UHGV-0070308_47	PHROG	phrog_6900	tail length tape measure protein	tail
UHGV-0070308_47	eggNOG-mapper	1449342.JQMR01000001_gene1701	Phage-related minor tail protein	NA
UHGV-0070308_47	COG	COG5412	Phage-related protein	NA
UHGV-0070308_48	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0070308_48	UniRef90	UniRef90_A0A075KJA3	Putative tail component	NA
UHGV-0070308_48	eggNOG-mapper	1399942.U3PIW9_9CAUD	Phage tail protein	NA
UHGV-0070308_48	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-0070308_48	Structural annotation	PF05709, TIGR01633, COG4722	NA	NA
UHGV-0070308_49	PHROG	phrog_1084	NA	unknown function
UHGV-0070308_49	eggNOG-mapper	1399942.U3PDS7_9CAUD	NA	NA
UHGV-0070308_49	Structural annotation	PF08481, NF032891, COG5456	NA	NA
UHGV-0070308_51	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0070308_51	UniRef90	UniRef90_F8J176	Putative antireceptor	NA
UHGV-0070308_51	eggNOG-mapper	508419.F8J176_9CAUD	peptidoglycan catabolic process	NA
UHGV-0070308_51	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0070308_51	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0070308_51	Structural annotation	PF06605, TIGR01665, COG4926	NA	NA
UHGV-0070308_52	PHROG	phrog_4105	NA	unknown function
UHGV-0070308_52	UniRef90	UniRef90_A0A8D9UHA9	Holin protein	NA
UHGV-0070308_52	eggNOG-mapper	742733.HMPREF9469_05011	NA	NA