UHGV-0070356

Genome information

Genome length 22,663 bps

CDS count 32

Completeness 53.92% (medium-quality)

geNomad score 0.9762

Prediction confidence Confident

Genome information
Genome ID	UHGV-0070356
vOTU ID	vOTU-029818
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_107333
BioSample	NA
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	53.92% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9762
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	31.93
Jumbo phage	No

Genome content
Genome length	22,663 bps
GC content	45.80%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	32
CDS density	92.76%
Average CDS length	660.47 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0070356_1	PHROG	phrog_17196	kinase	other
UHGV-0070356_1	eggNOG-mapper	742733.HMPREF9469_01805	NA	NA
UHGV-0070356_3	PHROG	phrog_18190	NA	unknown function
UHGV-0070356_3	UniRef90	UniRef90_G5HGN8	Peptidase S74 domain-containing protein	NA
UHGV-0070356_3	eggNOG-mapper	742733.HMPREF9469_01807	NA	NA
UHGV-0070356_3	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-0070356_3	Structural annotation	PF14594, NF033848, COG3501	NA	NA
UHGV-0070356_4	PHROG	phrog_1194	NA	unknown function
UHGV-0070356_4	eggNOG-mapper	742733.HMPREF9469_01808	NA	NA
UHGV-0070356_4	Pfam	PF20458	NA	DUF6711
UHGV-0070356_4	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0070356_5	eggNOG-mapper	1304866.K413DRAFT_4838	NA	NA
UHGV-0070356_6	PHROG	phrog_5319	outer membrane protein	other
UHGV-0070356_7	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0070356_7	UniRef90	UniRef90_A0A174GX48	Phage-like protein	NA
UHGV-0070356_7	eggNOG-mapper	742733.HMPREF9469_01814	tape measure	NA
UHGV-0070356_7	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0070356_7	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0070356_8	PHROG	phrog_2066	NA	unknown function
UHGV-0070356_8	eggNOG-mapper	1123304.AQYA01000037_gene232	NA	NA
UHGV-0070356_9	PHROG	phrog_183	tail chaperone protein	tail
UHGV-0070356_9	UniRef90	UniRef90_UPI0008324CF8	NA	NA
UHGV-0070356_9	eggNOG-mapper	742733.HMPREF9469_01816	NA	NA
UHGV-0070356_9	Pfam	PF19591	NA	DUF6096
UHGV-0070356_9	Structural annotation	PF19591	NA	NA
UHGV-0070356_10	PHROG	phrog_158	major tail protein	tail
UHGV-0070356_10	UniRef90	UniRef90_UPI00082AC77B	phage tail protein	NA
UHGV-0070356_10	eggNOG-mapper	742733.HMPREF9469_01817	Phage tail tube protein, TTP	NA
UHGV-0070356_10	Pfam	PF08813	Phage tail tube protein, TTP	Phage_tail_3
UHGV-0070356_10	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-0070356_11	PHROG	phrog_78	tail terminator	connector
UHGV-0070356_11	eggNOG-mapper	742733.HMPREF9469_01818	NA	NA
UHGV-0070356_11	Structural annotation	PF05657	NA	NA
UHGV-0070356_12	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0070356_12	UniRef90	UniRef90_A0A414APD1	HK97 gp10 family phage protein	NA
UHGV-0070356_12	eggNOG-mapper	742733.HMPREF9469_01819	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0070356_12	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0070356_12	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0070356_12	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0070356_13	PHROG	phrog_2168	NA	unknown function
UHGV-0070356_13	eggNOG-mapper	742733.HMPREF9469_01820	NA	NA
UHGV-0070356_14	PHROG	phrog_132	head-tail adaptor	connector
UHGV-0070356_14	UniRef90	UniRef90_A0A173WLV7	Phage gp6-like head-tail connector protein	NA
UHGV-0070356_14	eggNOG-mapper	742733.HMPREF9469_01821	Phage gp6-like head-tail connector protein	NA
UHGV-0070356_14	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0070356_14	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0070356_15	PHROG	phrog_247	major head protein	head and packaging
UHGV-0070356_15	UniRef90	UniRef90_D3ANA7	Putative coat protein	NA
UHGV-0070356_15	eggNOG-mapper	1304866.K413DRAFT_3038	NA	NA
UHGV-0070356_15	Structural annotation	PF20036, MF_04113, TIGR04387, COG4653	NA	NA
UHGV-0070356_16	PHROG	phrog_172	head scaffolding protein	head and packaging
UHGV-0070356_16	UniRef90	UniRef90_A0A3E2U4V3	NA	NA
UHGV-0070356_16	eggNOG-mapper	742733.HMPREF9469_01824	NA	NA
UHGV-0070356_16	Pfam	PF14265	NA	DUF4355
UHGV-0070356_16	Structural annotation	PF14265	NA	NA
UHGV-0070356_17	PHROG	phrog_2841	minor head protein	head and packaging
UHGV-0070356_17	UniRef90	UniRef90_G5HGQ6	Phage_Mu_F domain-containing protein	NA
UHGV-0070356_17	eggNOG-mapper	742733.HMPREF9469_01825	Phage head morphogenesis protein, SPP1 gp7 family	NA
UHGV-0070356_17	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0070356_17	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0070356_17	COG	COG2369	NA	NA
UHGV-0070356_17	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-0070356_18	PHROG	phrog_64	portal protein	head and packaging
UHGV-0070356_18	UniRef90	UniRef90_N9YY32	SPP1 family phage portal protein	NA
UHGV-0070356_18	eggNOG-mapper	742733.HMPREF9469_01826	Phage portal protein, SPP1 family	NA
UHGV-0070356_18	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0070356_18	NCBIFam	TIGR01538.1	phage portal protein	NA
UHGV-0070356_18	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0070356_19	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0070356_19	PHROG	phrog_10250	NA	unknown function
UHGV-0070356_19	UniRef90	UniRef90_N9YXK3	PBSX family phage terminase, large subunit	NA
UHGV-0070356_19	eggNOG-mapper	903814.ELI_3215	Phage terminase large subunit	NA
UHGV-0070356_19	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0070356_19	Pfam	PF17289	Terminase RNaseH-like domain	Terminase_6C
UHGV-0070356_19	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0070356_19	COG	COG1783	Phage terminase large subunit	NA
UHGV-0070356_19	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0070356_20	PHROG	phrog_1889	terminase small subunit	head and packaging
UHGV-0070356_20	UniRef90	UniRef90_UPI001EE889A0	phage terminase small subunit	NA
UHGV-0070356_20	eggNOG-mapper	33035.JPJF01000107_gene435	NA	NA
UHGV-0070356_20	Pfam	PF10668	Phage terminase small subunit	Phage_terminase
UHGV-0070356_20	NCBIFam	NF040601.1	phage terminase small subunit	NA
UHGV-0070356_20	COG	COG5484	NA	NA
UHGV-0070356_20	Structural annotation	PF06056, NF040601, COG5484	NA	NA
UHGV-0070356_22	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0070356_22	PHROG	phrog_3502	NA	unknown function
UHGV-0070356_22	UniRef90	UniRef90_G5HGR1	LexA_DNA_bind domain-containing protein	NA
UHGV-0070356_22	eggNOG-mapper	742733.HMPREF9469_01830	LexA DNA binding domain	NA
UHGV-0070356_22	Pfam	PF01726	LexA DNA binding domain	LexA_DNA_bind
UHGV-0070356_22	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0070356_23	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0070356_23	UniRef90	UniRef90_UPI001D089637	NA	NA
UHGV-0070356_23	eggNOG-mapper	1304866.K413DRAFT_3028	NA	NA
UHGV-0070356_23	Structural annotation	PF04545	NA	NA
UHGV-0070356_24	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0070356_24	PHROG	phrog_1	integrase	integration and excision
UHGV-0070356_24	UniRef90	UniRef90_A0A0F0C3Y7	Tyrosine recombinase XerC	NA
UHGV-0070356_24	eggNOG-mapper	1298920.KI911353_gene2699	Belongs to the 'phage' integrase family	NA
UHGV-0070356_24	Pfam	PF13495	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_4
UHGV-0070356_24	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0070356_24	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0070356_24	Structural annotation	PF00589, PF02899, MF_01807, TIGR02224, COG4973	NA	NA
UHGV-0070356_25	PHROG	phrog_25231	NA	unknown function
UHGV-0070356_25	eggNOG-mapper	411902.CLOBOL_05673	NA	NA
UHGV-0070356_25	Structural annotation	PF04936	NA	NA
UHGV-0070356_27	UniRef90	UniRef90_UPI00189796FC	zinc-ribbon domain-containing protein	NA
UHGV-0070356_27	Structural annotation	PF13248	NA	NA
UHGV-0070356_29	PHROG	phrog_2118	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0070356_29	UniRef90	UniRef90_A0A2K2TW99	HNH endonuclease	NA
UHGV-0070356_29	eggNOG-mapper	742740.HMPREF9474_03129	HNH endonuclease	NA
UHGV-0070356_29	Pfam	PF14279	HNH endonuclease	HNH_5
UHGV-0070356_29	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0070356_29	Structural annotation	COG1403	NA	NA
UHGV-0070356_31	PHROG	phrog_757	DNA methyltransferase	other
UHGV-0070356_31	UniRef90	UniRef90_UPI00189D46F4	DNA cytosine methyltransferase	NA
UHGV-0070356_31	eggNOG-mapper	485918.Cpin_3834	DNA (cytosine-5-)-methyltransferase activity	NA
UHGV-0070356_31	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0070356_31	Structural annotation	PF00145, MF_01872, TIGR00675, COG0270	NA	NA