UHGV-0070395

Genome information

Genome length 31,408 bps

CDS count 58

Completeness 63.53% (medium-quality)

geNomad score 0.9628

Prediction confidence Confident

Genome information
Genome ID	UHGV-0070395
vOTU ID	vOTU-026705
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_126161
BioSample	SAMEA2737757
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	63.53% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9628
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	28.75
Jumbo phage	No

Genome content
Genome length	31,408 bps
GC content	31.27%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	58
CDS density	90.49%
Average CDS length	495.67 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0070395_1	UniRef90	UniRef90_A0A3A9HXZ9	CopG family transcriptional regulator	NA
UHGV-0070395_1	eggNOG-mapper	1235800.C819_00492	NA	NA
UHGV-0070395_1	Structural annotation	PF01402, COG4710	NA	NA
UHGV-0070395_3	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-0070395_3	UniRef90	UniRef90_A0A416ZL61	NA	NA
UHGV-0070395_3	eggNOG-mapper	1256908.HMPREF0373_00479	NA	NA
UHGV-0070395_3	Structural annotation	PF14359	NA	NA
UHGV-0070395_4	PHROG	phrog_1048	NA	unknown function
UHGV-0070395_4	UniRef90	UniRef90_A0A417IJC2	NA	NA
UHGV-0070395_4	eggNOG-mapper	411462.DORLON_00765	NA	NA
UHGV-0070395_4	Pfam	PF11195	NA	DUF2829
UHGV-0070395_4	dbAPIS	APIS029	Tad2 is a "sponge" that sequesters the immune signaling molecules produced by Thoeris TIR-domain proteins in response to phage.	NA
UHGV-0070395_4	Structural annotation	PF11195	NA	NA
UHGV-0070395_5	PHROG	phrog_918	NA	unknown function
UHGV-0070395_5	UniRef90	UniRef90_UPI001D09AE2C	NA	NA
UHGV-0070395_5	eggNOG-mapper	1504823.CCMM01000008_gene1021	NA	NA
UHGV-0070395_5	Pfam	PF19791	NA	DUF6275
UHGV-0070395_5	Structural annotation	PF19791	NA	NA
UHGV-0070395_7	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0070395_7	UniRef90	UniRef90_UPI001570CBC5	phage minor capsid protein	NA
UHGV-0070395_7	eggNOG-mapper	1232449.BAHV02000010_gene2710	NA	NA
UHGV-0070395_7	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0070395_7	COG	COG2369	NA	NA
UHGV-0070395_7	Structural annotation	PF06152	NA	NA
UHGV-0070395_8	PHROG	phrog_533	portal protein	head and packaging
UHGV-0070395_8	UniRef90	UniRef90_A0A7I8DYD1	Putative minor capsid protein, phage associated	NA
UHGV-0070395_8	eggNOG-mapper	545697.HMPREF0216_02845	NA	NA
UHGV-0070395_8	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0070395_9	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0070395_9	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0070395_9	UniRef90	UniRef90_A0A7I8E1I1	Terminase	NA
UHGV-0070395_9	eggNOG-mapper	428127.EUBDOL_01229	Phage terminase, large subunit, PBSX family	NA
UHGV-0070395_9	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0070395_9	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0070395_9	COG	COG1783	Phage terminase large subunit	NA
UHGV-0070395_9	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0070395_10	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0070395_10	PHROG	phrog_2606	terminase small subunit	head and packaging
UHGV-0070395_10	UniRef90	UniRef90_A0A7I8DYC5	Phage terminase small subunit	NA
UHGV-0070395_10	eggNOG-mapper	411461.DORFOR_01162	Phage terminase, large subunit, PBSX family	NA
UHGV-0070395_10	Pfam	PF06056	Putative ATPase subunit of terminase (gpP-like)	Terminase_5
UHGV-0070395_10	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0070395_10	COG	COG1783	Phage terminase large subunit	NA
UHGV-0070395_10	Structural annotation	PF03592, PF10668, NF040601, COG3728	NA	NA
UHGV-0070395_11	eggNOG-mapper	1321774.HMPREF9108_00664	NA	NA
UHGV-0070395_12	KOfam	K07459	ybjD; putative ATP-dependent endonuclease of the OLD family	NA
UHGV-0070395_12	PHROG	phrog_14430	NA	unknown function
UHGV-0070395_12	UniRef90	UniRef90_UPI001D0A1198	ATP-binding protein	NA
UHGV-0070395_12	eggNOG-mapper	1227268.HMPREF1552_01028	NA	NA
UHGV-0070395_12	PADLOC	AAA_15	NA	NA
UHGV-0070395_12	Pfam	PF13304	AAA domain, putative AbiEii toxin, Type IV TA system	AAA_21
UHGV-0070395_12	COG	COG3950	Predicted ATP-binding protein involved in virulence	NA
UHGV-0070395_12	Structural annotation	PF11398, MF_00365, NF041760, COG4938	NA	NA
UHGV-0070395_13	UniRef90	UniRef90_A0A2T3G2L3	Ferritin-like diiron domain-containing protein	NA
UHGV-0070395_13	eggNOG-mapper	1211844.CBLM010000023_gene991	NA	NA
UHGV-0070395_16	PHROG	phrog_478	site-specific recombination directionality factor RDF	integration and excision
UHGV-0070395_16	UniRef90	UniRef90_A0A0J8Z1B9	Prophage pi1 protein 29	NA
UHGV-0070395_16	eggNOG-mapper	633135.C9WBA6_9CAUD	exonuclease activity	NA
UHGV-0070395_16	Pfam	PF08139	Prokaryotic membrane lipoprotein lipid attachment site	LPAM_1
UHGV-0070395_17	PHROG	phrog_12650	NA	unknown function
UHGV-0070395_18	Structural annotation	PF13973, NF008465, COG5475	NA	NA
UHGV-0070395_23	PHROG	phrog_2245	nucleoside triphosphate pyrophosphohydrolase	other
UHGV-0070395_23	UniRef90	UniRef90_A0A417IIQ4	MazG domain-containing protein	NA
UHGV-0070395_23	eggNOG-mapper	665950.HMPREF1025_01374	NA	NA
UHGV-0070395_23	Structural annotation	PF01503, TIGR03188	NA	NA
UHGV-0070395_24	PHROG	phrog_22292	NA	unknown function
UHGV-0070395_24	eggNOG-mapper	1232446.BAIE02000041_gene2433	NA	NA
UHGV-0070395_25	eggNOG-mapper	908337.HMPREF9257_0550	NA	NA
UHGV-0070395_26	PHROG	phrog_10455	NA	unknown function
UHGV-0070395_26	UniRef90	UniRef90_R7N9Z9	Conserved domain protein	NA
UHGV-0070395_27	eggNOG-mapper	1120978.KB894087_gene426	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC	NA
UHGV-0070395_27	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0070395_28	Structural annotation	PF01283, NF006816, COG4830	NA	NA
UHGV-0070395_30	UniRef90	UniRef90_A0A1T4LZF6	E2 family protein D	NA
UHGV-0070395_30	Structural annotation	PF14460, TIGR03737	NA	NA
UHGV-0070395_32	KOfam	K21029	moeB; molybdopterin-synthase adenylyltransferase [EC:2.7.7.80]	NA
UHGV-0070395_32	UniRef90	UniRef90_A0A417IIR9	ThiF domain-containing protein	NA
UHGV-0070395_32	eggNOG-mapper	428127.EUBDOL_01242	ThiF family	NA
UHGV-0070395_32	Pfam	PF00899	ThiF family	ThiF
UHGV-0070395_32	COG	COG0476	Molybdopterin or thiamine biosynthesis adenylyltransferase	NA
UHGV-0070395_32	Structural annotation	PF00899, MF_03049, TIGR03736, COG0476	NA	NA
UHGV-0070395_34	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0070395_34	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0070395_34	UniRef90	UniRef90_A0A417IHK0	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0070395_34	eggNOG-mapper	1211844.CBLM010000016_gene1505	Endodeoxyribonuclease RusA	NA
UHGV-0070395_34	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0070395_34	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0070395_34	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0070395_36	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0070395_36	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0070395_36	UniRef90	UniRef90_A0A416FZG2	Single-stranded DNA-binding protein	NA
UHGV-0070395_36	eggNOG-mapper	1504823.CCMM01000012_gene1971	Single-strand binding protein family	NA
UHGV-0070395_36	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0070395_36	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0070395_36	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0070395_36	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0070395_36	Structural annotation	PF00436, MF_00984, NF005579, COG0629	NA	NA
UHGV-0070395_37	PHROG	phrog_9804	NA	unknown function
UHGV-0070395_37	UniRef90	UniRef90_A0A7I8E003	Inhibitor_G39P domain-containing protein	NA
UHGV-0070395_37	Pfam	PF11417	Loader and inhibitor of phage G40P	Inhibitor_G39P
UHGV-0070395_37	Structural annotation	PF11417	NA	NA
UHGV-0070395_38	PHROG	phrog_186	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0070395_38	Structural annotation	PF09681, MF_01177, NF033789, COG0640	NA	NA
UHGV-0070395_40	PHROG	phrog_2760	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0070395_40	UniRef90	UniRef90_A0A417IHY2	Phage recombination protein Bet	NA
UHGV-0070395_40	eggNOG-mapper	1122173.AXVL01000068_gene1414	DNA synthesis involved in double-strand break repair via homologous recombination	NA
UHGV-0070395_40	Pfam	PF03837	RecT family	RecT
UHGV-0070395_40	NCBIFam	TIGR01913.1	phage recombination protein Bet	NA
UHGV-0070395_40	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0070395_40	Structural annotation	PF03837, TIGR01913, COG3723	NA	NA
UHGV-0070395_41	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0070395_41	PHROG	phrog_19236	NA	unknown function
UHGV-0070395_41	UniRef90	UniRef90_A0A845R1A4	XRE family transcriptional regulator	NA
UHGV-0070395_41	eggNOG-mapper	552396.HMPREF0863_00329	Transcriptional	NA
UHGV-0070395_41	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0070395_41	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0070395_42	PHROG	phrog_674	NA	unknown function
UHGV-0070395_42	UniRef90	UniRef90_A0A416FZA6	NA	NA
UHGV-0070395_42	Pfam	PF07083	NA	DUF1351
UHGV-0070395_42	Structural annotation	PF07083	NA	NA
UHGV-0070395_43	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0070395_43	PHROG	phrog_63	anti-repressor Ant	transcription regulation
UHGV-0070395_43	UniRef90	UniRef90_A0A417IHH4	Phage regulatory protein/antirepressor Ant	NA
UHGV-0070395_43	eggNOG-mapper	1423816.BACQ01000027_gene970	Phage regulatory protein Rha (Phage_pRha)	NA
UHGV-0070395_43	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-0070395_43	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0070395_43	NCBIFam	TIGR02681.1	phage regulatory protein, Rha family	NA
UHGV-0070395_43	COG	COG3645	Phage antirepressor protein YoqD, KilAC domain	NA
UHGV-0070395_43	Structural annotation	PF09669, PF03374, TIGR02681, COG3646	NA	NA
UHGV-0070395_44	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0070395_44	UniRef90	UniRef90_A0A7I8DYN2	YqaJ domain-containing protein	NA
UHGV-0070395_44	eggNOG-mapper	568816.Acin_1253	YqaJ viral recombinase family protein	NA
UHGV-0070395_44	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-0070395_44	NCBIFam	TIGR03033.1	putative phage-type endonuclease	NA
UHGV-0070395_44	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-0070395_44	Structural annotation	PF09588, TIGR03033, COG5377	NA	NA
UHGV-0070395_45	Structural annotation	PF04325, TIGR04116, COG5570	NA	NA
UHGV-0070395_50	UniRef90	UniRef90_UPI000E4DC6CD	helix-turn-helix domain-containing protein	NA
UHGV-0070395_50	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0070395_52	eggNOG-mapper	1229520.ADIAL_0156	TRANSCRIPTIONal	NA
UHGV-0070395_52	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0070395_53	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0070395_53	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0070395_53	UniRef90	UniRef90_UPI000E50A1FC	helix-turn-helix domain-containing protein	NA
UHGV-0070395_53	eggNOG-mapper	469596.HMPREF9488_01307	Helix-turn-helix XRE-family like proteins	NA
UHGV-0070395_53	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0070395_53	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0070395_53	COG	COG3655	DNA-binding transcriptional regulator, XRE family	NA
UHGV-0070395_53	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0070395_54	PHROG	phrog_87	metallo-protease	other
UHGV-0070395_54	UniRef90	UniRef90_A0A7I8DY86	Peptidase_M78 domain-containing protein	NA
UHGV-0070395_54	eggNOG-mapper	1211844.CBLM010000023_gene993	IrrE N-terminal-like domain	NA
UHGV-0070395_54	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0070395_54	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0070395_55	UniRef90	UniRef90_A0A3A9JRX6	Tetratricopeptide repeat protein	NA
UHGV-0070395_55	Pfam	PF14559	Tetratricopeptide repeat	TPR_19
UHGV-0070395_55	Structural annotation	PF18768, MF_00994, NF008756, COG5010	NA	NA
UHGV-0070395_56	eggNOG-mapper	1235792.C808_05272	NA	NA
UHGV-0070395_56	Structural annotation	PF11631, TIGR03066	NA	NA
UHGV-0070395_58	KOfam	K14059	int; integrase	NA
UHGV-0070395_58	PHROG	phrog_1	integrase	integration and excision
UHGV-0070395_58	UniRef90	UniRef90_UPI000E4C34F1	site-specific integrase	NA
UHGV-0070395_58	eggNOG-mapper	702450.CUW_0508	Phage integrase family	NA
UHGV-0070395_58	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0070395_58	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0070395_58	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0070395_58	Structural annotation	PF00589, PF14659, PF14657, MF_01808, TIGR02224, COG4974	NA	NA