UHGV-0070523

Genome information

Genome length 32,340 bps

CDS count 52

Completeness 87.55% (medium-quality)

geNomad score 0.9820

Prediction confidence Confident

Genome information
Genome ID	UHGV-0070523
vOTU ID	vOTU-022770
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_113686
BioSample	SAMEA2580082
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	87.55% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	22
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9820
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	36.64
Jumbo phage	No

Genome content
Genome length	32,340 bps
GC content	41.29%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	52
CDS density	92.71%
Average CDS length	580.21 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0070523_1	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0070523_1	PHROG	phrog_95	integrase	integration and excision
UHGV-0070523_1	UniRef90	UniRef90_UPI000C76C8D1	recombinase family protein	NA
UHGV-0070523_1	eggNOG-mapper	1235799.C818_04182	Resolvase, N terminal domain	NA
UHGV-0070523_1	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0070523_1	Pfam	PF07508	Recombinase	Recombinase
UHGV-0070523_1	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0070523_1	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0070523_1	Structural annotation	PF00239, NF041201, COG1961	NA	NA
UHGV-0070523_2	UniRef90	UniRef90_A0A1C5W1A8	PBECR3 domain-containing protein	NA
UHGV-0070523_2	eggNOG-mapper	748727.CLJU_c39230	NA	NA
UHGV-0070523_2	Pfam	PF18812	phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease3	PBECR3
UHGV-0070523_2	Structural annotation	PF18812, TIGR00053, COG2929	NA	NA
UHGV-0070523_3	KOfam	K07504	K07504; predicted type IV restriction endonuclease	NA
UHGV-0070523_3	PHROG	phrog_4225	endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0070523_3	UniRef90	UniRef90_R6XPT2	Type I restriction enzyme HsdR protein N-terminal domain protein	NA
UHGV-0070523_3	eggNOG-mapper	411462.DORLON_00821	Type I restriction enzyme R protein N terminus (HSDR_N)	NA
UHGV-0070523_3	Pfam	PF04313	Type I restriction enzyme R protein N terminus (HSDR_N)	HSDR_N
UHGV-0070523_3	COG	COG4748	NA	NA
UHGV-0070523_3	Structural annotation	PF13588, TIGR04256, COG4748	NA	NA
UHGV-0070523_4	PHROG	phrog_87	metallo-protease	other
UHGV-0070523_4	UniRef90	UniRef90_R6WB52	Peptidase_M78 domain-containing protein	NA
UHGV-0070523_4	eggNOG-mapper	742765.HMPREF9457_02093	IrrE N-terminal-like domain	NA
UHGV-0070523_4	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0070523_4	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0070523_4	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0070523_5	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-0070523_5	UniRef90	UniRef90_A0A2N5PI64	Transcriptional regulator	NA
UHGV-0070523_5	eggNOG-mapper	411470.RUMGNA_03230	sequence-specific DNA binding	NA
UHGV-0070523_5	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0070523_5	Structural annotation	PF01381, NF007257, COG3655	NA	NA
UHGV-0070523_6	UniRef90	UniRef90_C0BC22	Toxin-antitoxin system, antitoxin component, Xre family	NA
UHGV-0070523_6	eggNOG-mapper	411470.RUMGNA_03231	NA	NA
UHGV-0070523_6	Pfam	PF05339	NA	DUF739
UHGV-0070523_6	COG	COG3655	DNA-binding transcriptional regulator, XRE family	NA
UHGV-0070523_6	Structural annotation	PF05339, NF002773, COG1476	NA	NA
UHGV-0070523_7	PHROG	phrog_463	anti-repressor	transcription regulation
UHGV-0070523_7	UniRef90	UniRef90_UPI0009D68101	ORF6C domain-containing protein	NA
UHGV-0070523_7	eggNOG-mapper	1304866.K413DRAFT_1188	AntA/AntB antirepressor	NA
UHGV-0070523_7	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0070523_7	Pfam	PF10552	ORF6C domain	ORF6C
UHGV-0070523_7	COG	COG3617	Prophage antirepressor	NA
UHGV-0070523_7	Structural annotation	PF10552, PF02498, NF033622, COG3617	NA	NA
UHGV-0070523_9	Structural annotation	PF09202, MF_01177, TIGR01889, COG5631	NA	NA
UHGV-0070523_10	PHROG	phrog_32168	NA	unknown function
UHGV-0070523_10	Pfam	PF13240	zinc-ribbon domain	zinc_ribbon_2
UHGV-0070523_15	UniRef90	UniRef90_UPI001F2FF670	CbrC family protein	NA
UHGV-0070523_16	PHROG	phrog_659	Sak-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0070523_16	UniRef90	UniRef90_UPI001F180A96	NA	NA
UHGV-0070523_16	eggNOG-mapper	33035.JPJF01000135_gene5082	NA	NA
UHGV-0070523_16	Pfam	PF06378	NA	DUF1071
UHGV-0070523_16	Structural annotation	PF06378, TIGR00607, COG5055	NA	NA
UHGV-0070523_17	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0070523_17	eggNOG-mapper	411470.RUMGNA_02194	NA	NA
UHGV-0070523_17	Structural annotation	PF05772, NF007281	NA	NA
UHGV-0070523_18	PHROG	phrog_7566	NA	unknown function
UHGV-0070523_18	UniRef90	UniRef90_UPI000C7676A6	phosphoenolpyruvate carboxykinase	NA
UHGV-0070523_19	PHROG	phrog_15768	NA	unknown function
UHGV-0070523_19	eggNOG-mapper	886379.AEWI01000001_gene1766	NA	NA
UHGV-0070523_19	Structural annotation	PF09681, MF_01177, TIGR01714, COG0640	NA	NA
UHGV-0070523_20	PHROG	phrog_2289	helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0070523_20	UniRef90	UniRef90_R6XPV0	Inhibitor_G39P domain-containing protein	NA
UHGV-0070523_20	eggNOG-mapper	585394.RHOM_14005	Loader and inhibitor of phage G40P	NA
UHGV-0070523_20	Pfam	PF11417	Loader and inhibitor of phage G40P	Inhibitor_G39P
UHGV-0070523_21	PHROG	phrog_3253	NA	unknown function
UHGV-0070523_21	eggNOG-mapper	411461.DORFOR_00013	NA	NA
UHGV-0070523_22	PHROG	phrog_59	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0070523_22	UniRef90	UniRef90_R6WN60	NUMOD4 domain-containing protein	NA
UHGV-0070523_22	eggNOG-mapper	1410650.JHWL01000037_gene604	NA	NA
UHGV-0070523_22	Pfam	PF07463	NUMOD4 motif	NUMOD4
UHGV-0070523_22	Structural annotation	PF07463, PF07453, TIGR01453	NA	NA
UHGV-0070523_23	KOfam	K07319	yhdJ; adenine-specific DNA-methyltransferase [EC:2.1.1.72]	NA
UHGV-0070523_23	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0070523_23	UniRef90	UniRef90_R6WG22	DNA methylase family protein	NA
UHGV-0070523_23	eggNOG-mapper	1298920.KI911353_gene2709	DEAD-like helicases superfamily	NA
UHGV-0070523_23	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-0070523_23	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0070523_23	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-0070523_23	Structural annotation	PF01555, PF16203, PF04851, MF_01821, MF_00472, NF041790, NF008572, COG0553, COG0863	NA	NA
UHGV-0070523_27	UniRef90	UniRef90_A0A1C5RYU8	Restriction alleviation protein, Lar family	NA
UHGV-0070523_28	PHROG	phrog_15198	NA	unknown function
UHGV-0070523_28	UniRef90	UniRef90_A0A3A5TWI3	NA	NA
UHGV-0070523_28	eggNOG-mapper	478749.BRYFOR_07594	NA	NA
UHGV-0070523_30	PHROG	phrog_2717	NA	unknown function
UHGV-0070523_30	eggNOG-mapper	476272.RUMHYD_02840	NA	NA
UHGV-0070523_30	Structural annotation	PF19962, COG1579	NA	NA
UHGV-0070523_31	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0070523_31	UniRef90	UniRef90_A0A6L8RVY0	Sigma70_r4 domain-containing protein	NA
UHGV-0070523_31	eggNOG-mapper	411461.DORFOR_00754	sigma factor activity	NA
UHGV-0070523_31	Pfam	PF04545	Sigma-70, region 4	Sigma70_r4
UHGV-0070523_31	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0070523_31	Structural annotation	PF07374, MF_00674, NF007227, COG1342	NA	NA
UHGV-0070523_32	PHROG	phrog_30856	NA	unknown function
UHGV-0070523_32	eggNOG-mapper	318464.IO99_03680	NA	NA
UHGV-0070523_34	PHROG	phrog_309	terminase small subunit	head and packaging
UHGV-0070523_34	UniRef90	UniRef90_A0A2N5PKF8	Transposase	NA
UHGV-0070523_34	eggNOG-mapper	1232453.BAIF02000011_gene3351	HNH endonuclease	NA
UHGV-0070523_34	Pfam	PF01527	Transposase	HTH_Tnp_1
UHGV-0070523_34	COG	COG2963	Transposase InsE and inactivated derivatives	NA
UHGV-0070523_34	Structural annotation	PF07141	NA	NA
UHGV-0070523_35	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0070523_35	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0070523_35	UniRef90	UniRef90_S2Z471	PBSX family phage terminase, large subunit	NA
UHGV-0070523_35	eggNOG-mapper	411460.RUMTOR_02085	NA	NA
UHGV-0070523_35	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0070523_35	COG	COG1783	Phage terminase large subunit	NA
UHGV-0070523_35	Structural annotation	PF04466, PF20441, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0070523_36	PHROG	phrog_533	portal protein	head and packaging
UHGV-0070523_36	UniRef90	UniRef90_UPI001C8E2051	phage capsid protein	NA
UHGV-0070523_36	eggNOG-mapper	658655.HMPREF0988_02564	NA	NA
UHGV-0070523_36	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0070523_37	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0070523_37	UniRef90	UniRef90_A0A174BAS8	Phage minor capsid protein 2	NA
UHGV-0070523_37	eggNOG-mapper	658655.HMPREF0988_02563	Phage minor capsid protein 2	NA
UHGV-0070523_37	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0070523_37	COG	COG2369	NA	NA
UHGV-0070523_37	Structural annotation	PF06152, TIGR01641	NA	NA
UHGV-0070523_38	eggNOG-mapper	658655.HMPREF0988_02562	NA	NA
UHGV-0070523_39	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0070523_39	UniRef90	UniRef90_R6WG39	Phage minor structural protein GP20	NA
UHGV-0070523_39	eggNOG-mapper	658655.HMPREF0988_02561	Phage minor structural protein GP20	NA
UHGV-0070523_39	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0070523_39	Structural annotation	PF06810	NA	NA
UHGV-0070523_40	PHROG	phrog_422	major head protein	head and packaging
UHGV-0070523_40	eggNOG-mapper	411470.RUMGNA_02219	NA	NA
UHGV-0070523_40	Structural annotation	PF21703, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0070523_41	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0070523_41	eggNOG-mapper	665956.HMPREF1032_03064	NA	NA
UHGV-0070523_41	Structural annotation	PF05135	NA	NA
UHGV-0070523_42	PHROG	phrog_3366	NA	unknown function
UHGV-0070523_42	eggNOG-mapper	742765.HMPREF9457_02129	NA	NA
UHGV-0070523_42	Pfam	PF20536	NA	DUF6751
UHGV-0070523_42	Structural annotation	PF20536, TIGR01563, COG5614	NA	NA
UHGV-0070523_43	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0070523_43	UniRef90	UniRef90_UPI00093128B4	minor capsid protein	NA
UHGV-0070523_43	eggNOG-mapper	411461.DORFOR_00741	NA	NA
UHGV-0070523_43	Structural annotation	PF11114	NA	NA
UHGV-0070523_44	PHROG	phrog_3266	tail completion	connector
UHGV-0070523_44	eggNOG-mapper	411461.DORFOR_00740	NA	NA
UHGV-0070523_44	Structural annotation	PF12691	NA	NA
UHGV-0070523_45	PHROG	phrog_3099	NA	unknown function
UHGV-0070523_45	eggNOG-mapper	411468.CLOSCI_02404	NA	NA
UHGV-0070523_45	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0070523_46	PHROG	phrog_4450	NA	unknown function
UHGV-0070523_46	eggNOG-mapper	411461.DORFOR_00738	NA	NA
UHGV-0070523_46	Pfam	PF20378	NA	DUF6673
UHGV-0070523_46	Structural annotation	PF20378	NA	NA
UHGV-0070523_47	PHROG	phrog_706	NA	unknown function
UHGV-0070523_47	UniRef90	UniRef90_R6WB95	Bacteriophage Gp15 protein	NA
UHGV-0070523_47	eggNOG-mapper	411461.DORFOR_00737	COG NOG24969 non supervised orthologous group	NA
UHGV-0070523_47	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0070523_47	Structural annotation	PF06854	NA	NA
UHGV-0070523_48	eggNOG-mapper	411461.DORFOR_00736	NA	NA
UHGV-0070523_48	Structural annotation	PF10122, COG4416	NA	NA
UHGV-0070523_49	PHROG	phrog_1204	tail protein	tail
UHGV-0070523_49	UniRef90	UniRef90_R6WN91	TMP_3 domain-containing protein	NA
UHGV-0070523_49	eggNOG-mapper	411461.DORFOR_00735	nuclear chromosome segregation	NA
UHGV-0070523_49	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0070523_49	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0070523_49	COG	COG1511	NA	NA
UHGV-0070523_49	Structural annotation	PF20155, COG3941	NA	NA
UHGV-0070523_50	eggNOG-mapper	411462.DORLON_00776	NA	NA
UHGV-0070523_50	Structural annotation	PF16774, TIGR01633, COG4722	NA	NA
UHGV-0070523_51	PHROG	phrog_538	minor tail protein	tail
UHGV-0070523_51	eggNOG-mapper	411462.DORLON_00775	NA	NA
UHGV-0070523_51	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0070523_51	Structural annotation	PF14594, TIGR01665, COG4379	NA	NA
UHGV-0070523_52	PHROG	phrog_9994	NA	unknown function
UHGV-0070523_52	UniRef90	UniRef90_A0A6L8RVX5	H_lectin domain-containing protein	NA
UHGV-0070523_52	eggNOG-mapper	411460.RUMTOR_02097	NA	NA