UHGV-0070566

Genome information

Genome length 35,540 bps

CDS count 46

Completeness 87.32% (medium-quality)

geNomad score 0.9542

Prediction confidence Confident

Genome information
Genome ID	UHGV-0070566
vOTU ID	vOTU-016573
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_129081
BioSample	SAMEA2737674
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	87.32% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9542
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	51.46
Jumbo phage	No

Genome content
Genome length	35,540 bps
GC content	53.87%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	46
CDS density	93.70%
Average CDS length	726.98 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0070566_1	eggNOG-mapper	394503.Ccel_1297	NA	NA
UHGV-0070566_2	PHROG	phrog_1863	NA	unknown function
UHGV-0070566_2	UniRef90	UniRef90_A0A2K9NYV1	Holin	NA
UHGV-0070566_2	eggNOG-mapper	556261.HMPREF0240_01265	NA	NA
UHGV-0070566_3	KOfam	K21471	cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-]	NA
UHGV-0070566_3	PHROG	phrog_1493	endolysin	lysis
UHGV-0070566_3	UniRef90	UniRef90_A0A316RRK6	NlpC/P60 domain-containing protein	NA
UHGV-0070566_3	eggNOG-mapper	756067.MicvaDRAFT_4109	Phage lysozyme	NA
UHGV-0070566_3	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0070566_3	Pfam	PF00877	NlpC/P60 family	NLPC_P60
UHGV-0070566_3	COG	COG3409	Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases	NA
UHGV-0070566_3	Structural annotation	PF00877, PF00112, PF01471, NF033742, COG0791, COG4870	NA	NA
UHGV-0070566_4	Pfam	PF02839	Carbohydrate-binding module family 5/12	CBM_5_12
UHGV-0070566_8	PHROG	phrog_18725	NA	unknown function
UHGV-0070566_8	eggNOG-mapper	1226322.HMPREF1545_00062	NA	NA
UHGV-0070566_9	PHROG	phrog_32744	NA	unknown function
UHGV-0070566_9	eggNOG-mapper	411902.CLOBOL_00124	NA	NA
UHGV-0070566_9	Structural annotation	PF14594, PF03256, NF033848, COG4379, COG5156	NA	NA
UHGV-0070566_10	PHROG	phrog_1194	NA	unknown function
UHGV-0070566_10	eggNOG-mapper	1232449.BAHV02000010_gene2724	NA	NA
UHGV-0070566_10	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0070566_11	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0070566_11	UniRef90	UniRef90_A0A1C5N801	ATPase involved in DNA repair	NA
UHGV-0070566_11	eggNOG-mapper	33035.JPJF01000093_gene2243	phage tail tape measure protein	NA
UHGV-0070566_11	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0070566_11	Structural annotation	PF05546, TIGR02559	NA	NA
UHGV-0070566_12	PHROG	phrog_706	NA	unknown function
UHGV-0070566_12	UniRef90	UniRef90_A0A1C6I6N3	Bacteriophage Gp15 protein	NA
UHGV-0070566_12	eggNOG-mapper	748224.HMPREF9436_03328	Bacteriophage Gp15 protein	NA
UHGV-0070566_12	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0070566_12	Structural annotation	PF06854	NA	NA
UHGV-0070566_13	PHROG	phrog_11299	NA	unknown function
UHGV-0070566_13	UniRef90	UniRef90_A0A2Z4QA03	Tail assembly chaperone protein	NA
UHGV-0070566_13	eggNOG-mapper	1120746.CCNL01000014_gene2103	NA	NA
UHGV-0070566_13	Structural annotation	PF10666	NA	NA
UHGV-0070566_14	PHROG	phrog_3099	NA	unknown function
UHGV-0070566_14	eggNOG-mapper	645991.Sgly_0346	NA	NA
UHGV-0070566_14	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0070566_15	PHROG	phrog_3266	tail completion	connector
UHGV-0070566_15	UniRef90	UniRef90_A0A353IZQ8	Chloramphenicol resistance protein	NA
UHGV-0070566_15	eggNOG-mapper	663278.Ethha_0098	NA	NA
UHGV-0070566_15	Structural annotation	PF12691	NA	NA
UHGV-0070566_16	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0070566_16	UniRef90	UniRef90_UPI000F63A4E5	minor capsid protein	NA
UHGV-0070566_16	eggNOG-mapper	573061.Clocel_3538	Minor capsid protein	NA
UHGV-0070566_16	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0070566_16	Structural annotation	PF11114	NA	NA
UHGV-0070566_17	PHROG	phrog_3366	NA	unknown function
UHGV-0070566_17	Pfam	PF20536	NA	DUF6751
UHGV-0070566_17	Structural annotation	PF20536, COG1853	NA	NA
UHGV-0070566_18	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0070566_18	eggNOG-mapper	1120998.AUFC01000030_gene2237	NA	NA
UHGV-0070566_19	PHROG	phrog_283	major head protein	head and packaging
UHGV-0070566_19	UniRef90	UniRef90_A0A1C6I0L7	p22 coat protein-gene protein 5	NA
UHGV-0070566_19	eggNOG-mapper	1499683.CCFF01000014_gene3908	P22 coat protein - gene protein 5	NA
UHGV-0070566_19	Pfam	PF11651	P22 coat protein - gene protein 5	P22_CoatProtein
UHGV-0070566_19	Structural annotation	PF11651, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0070566_20	PHROG	phrog_2303	head scaffolding protein	head and packaging
UHGV-0070566_20	UniRef90	UniRef90_A0A1R0Z704	Scaffolding protein	NA
UHGV-0070566_21	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0070566_21	UniRef90	UniRef90_A0A2V2FIV7	Phage capsid protein	NA
UHGV-0070566_21	eggNOG-mapper	645991.Sgly_0338	NA	NA
UHGV-0070566_21	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0070566_21	Pfam	PF18810	phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease2	PBECR2
UHGV-0070566_21	COG	COG2369	NA	NA
UHGV-0070566_21	Structural annotation	PF06152, PF18825	NA	NA
UHGV-0070566_22	PHROG	phrog_1233	NA	unknown function
UHGV-0070566_22	UniRef90	UniRef90_A0A7X0Y568	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0070566_22	eggNOG-mapper	1300150.EMQU_2503	NA	NA
UHGV-0070566_22	Structural annotation	PF06114	NA	NA
UHGV-0070566_23	PHROG	phrog_533	portal protein	head and packaging
UHGV-0070566_23	UniRef90	UniRef90_A0A7G9WF85	Phage portal protein	NA
UHGV-0070566_23	eggNOG-mapper	645991.Sgly_0336	NA	NA
UHGV-0070566_23	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0070566_24	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0070566_24	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0070566_24	UniRef90	UniRef90_UPI0019D16F13	PBSX family phage terminase large subunit	NA
UHGV-0070566_24	eggNOG-mapper	1232449.BAHV02000010_gene2708	Terminase-like family	NA
UHGV-0070566_24	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0070566_24	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0070566_24	COG	COG1783	Phage terminase large subunit	NA
UHGV-0070566_24	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0070566_25	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0070566_25	PHROG	phrog_2606	terminase small subunit	head and packaging
UHGV-0070566_25	UniRef90	UniRef90_A0A4R1S4M1	Phage terminase small subunit	NA
UHGV-0070566_25	eggNOG-mapper	1235800.C819_02241	terminase, small subunit	NA
UHGV-0070566_25	Pfam	PF10668	Phage terminase small subunit	Phage_terminase
UHGV-0070566_25	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0070566_25	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0070566_25	Structural annotation	PF03592, PF10668, NF040601, COG3728	NA	NA
UHGV-0070566_26	PHROG	phrog_2655	excisionase	integration and excision
UHGV-0070566_26	UniRef90	UniRef90_A0A1V1HZ43	HTH_59 domain-containing protein	NA
UHGV-0070566_26	eggNOG-mapper	521003.COLINT_02072	NA	NA
UHGV-0070566_26	Pfam	PF20038	Helix-turn-helix domain	HTH_59
UHGV-0070566_26	Structural annotation	PF20038, TIGR01764	NA	NA
UHGV-0070566_27	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0070566_27	Structural annotation	PF04545, NF033634	NA	NA
UHGV-0070566_29	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0070566_29	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0070566_29	UniRef90	UniRef90_A0A533SEP0	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0070566_29	eggNOG-mapper	394503.Ccel_3302	endodeoxyribonuclease RusA	NA
UHGV-0070566_29	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0070566_29	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0070566_29	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0070566_30	KOfam	K07505	repA; regulatory protein RepA	NA
UHGV-0070566_30	PHROG	phrog_2597	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-0070566_30	UniRef90	UniRef90_F0SXE5	Primase 2	NA
UHGV-0070566_30	eggNOG-mapper	645991.Sgly_0325	Primase C terminal 2 (PriCT-2)	NA
UHGV-0070566_30	Pfam	PF08707	Primase C terminal 2 (PriCT-2)	PriCT_2
UHGV-0070566_30	Pfam	PF13481	AAA domain	AAA_25
UHGV-0070566_30	COG	COG3598	RecA-family ATPase	NA
UHGV-0070566_30	Structural annotation	PF13481, PF16793, PF08220, MF_00350, MF_00700, NF006606, NF001641, COG3598, COG3285	NA	NA
UHGV-0070566_31	KOfam	K17677	IRC3; ATP-dependent helicase IRC3 [EC:5.6.2.-]	NA
UHGV-0070566_31	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0070566_31	UniRef90	UniRef90_F0SXE3	Type III restriction protein res subunit	NA
UHGV-0070566_31	eggNOG-mapper	645991.Sgly_0323	type III restriction enzyme, res subunit	NA
UHGV-0070566_31	PADLOC	mREase_IV_00005	Type IV methyl-directed restriction enzyme	RM
UHGV-0070566_31	Pfam	PF04851	Type III restriction enzyme, res subunit	ResIII
UHGV-0070566_31	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0070566_31	COG	COG1061	Superfamily II DNA or RNA helicase	NA
UHGV-0070566_31	Structural annotation	PF04851, PF16203, MF_01489, NF008521, COG1061	NA	NA
UHGV-0070566_32	PHROG	phrog_2698	NA	unknown function
UHGV-0070566_32	UniRef90	UniRef90_B8I141	NA	NA
UHGV-0070566_32	eggNOG-mapper	394503.Ccel_3308	NA	NA
UHGV-0070566_32	Structural annotation	PF05037	NA	NA
UHGV-0070566_33	PHROG	phrog_124	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0070566_33	UniRef90	UniRef90_UPI0011068BCC	ATP-binding protein	NA
UHGV-0070566_33	eggNOG-mapper	1232449.BAHV02000010_gene2697	AAA domain	NA
UHGV-0070566_33	Pfam	PF13479	AAA domain	AAA_24
UHGV-0070566_33	Structural annotation	PF13479, MF_00268, TIGR01618, COG0468	NA	NA
UHGV-0070566_34	KOfam	K03546	sbcC, rad50; DNA repair protein SbcC/Rad50	NA
UHGV-0070566_34	PHROG	phrog_1499	NA	unknown function
UHGV-0070566_34	UniRef90	UniRef90_A0A358QWL8	Chromosome segregation protein SMC	NA
UHGV-0070566_34	eggNOG-mapper	645991.Sgly_0320	domain protein	NA
UHGV-0070566_34	Pfam	PF13476	AAA domain	AAA_23
UHGV-0070566_34	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0070566_34	Structural annotation	PF11398, MF_00365, TIGR00634, COG0497	NA	NA
UHGV-0070566_35	UniRef90	UniRef90_G2G0T6	HNH endonuclease family protein	NA
UHGV-0070566_35	eggNOG-mapper	913865.DOT_5669	HNH endonuclease	NA
UHGV-0070566_35	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-0070566_41	UniRef90	UniRef90_A0A316T8M7	Transcriptional regulator	NA
UHGV-0070566_41	eggNOG-mapper	1430331.EP10_02425	NA	NA
UHGV-0070566_41	Structural annotation	PF05339, NF041951, COG3655	NA	NA
UHGV-0070566_42	UniRef90	UniRef90_UPI0018AA364F	helix-turn-helix transcriptional regulator	NA
UHGV-0070566_42	eggNOG-mapper	33035.JPJF01000055_gene1671	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0070566_42	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0070566_42	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0070566_42	Structural annotation	PF13560, MF_00535, NF041951, COG3655	NA	NA
UHGV-0070566_43	Pfam	PF12773	Double zinc ribbon	DZR
UHGV-0070566_43	Pfam	PF13248	zinc-ribbon domain	zf-ribbon_3
UHGV-0070566_44	UniRef90	UniRef90_UPI00058D000C	acid shock protein	NA
UHGV-0070566_45	PHROG	phrog_7115	NA	unknown function
UHGV-0070566_45	UniRef90	UniRef90_UPI00189A2A6A	PH domain-containing protein	NA
UHGV-0070566_45	eggNOG-mapper	1410668.JNKC01000008_gene2722	Bacterial PH domain	NA
UHGV-0070566_45	Pfam	PF08000	Bacterial PH domain	bPH_1
UHGV-0070566_45	Structural annotation	PF08000, MF_00437	NA	NA
UHGV-0070566_46	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0070566_46	PHROG	phrog_95	integrase	integration and excision
UHGV-0070566_46	UniRef90	UniRef90_R6T3E4	Resolvase domain protein	NA
UHGV-0070566_46	eggNOG-mapper	394503.Ccel_3078	Resolvase, N terminal domain	NA
UHGV-0070566_46	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0070566_46	Pfam	PF07508	Recombinase	Recombinase
UHGV-0070566_46	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0070566_46	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0070566_46	Structural annotation	PF00239, PF07508, PF15188, NF041201, COG1961	NA	NA