UHGV-0070685

Genome information

Genome length 29,596 bps

CDS count 49

Completeness 65.04% (medium-quality)

geNomad score 0.9674

Prediction confidence Confident

Genome information
Genome ID	UHGV-0070685
vOTU ID	vOTU-042301
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_127748
BioSample	SAMEA2737833
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	65.04% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9674
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	59.56
Jumbo phage	No

Genome content
Genome length	29,596 bps
GC content	50.35%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	49
CDS density	93.20%
Average CDS length	565.84 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0070685_2	PHROG	phrog_2205	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0070685_2	UniRef90	UniRef90_UPI001E2B9DFF	host-nuclease inhibitor Gam family protein	NA
UHGV-0070685_2	eggNOG-mapper	926561.KB900619_gene2386	Bacteriophage Mu Gam like protein	NA
UHGV-0070685_2	Pfam	PF07352	Bacteriophage Mu Gam like protein	Phage_Mu_Gam
UHGV-0070685_2	Structural annotation	PF07352	NA	NA
UHGV-0070685_3	PHROG	phrog_7838	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0070685_3	UniRef90	UniRef90_A0A8D9UGW3	DNA repair protein RAD52-like protein	NA
UHGV-0070685_3	eggNOG-mapper	742767.HMPREF9456_02397	NA	NA
UHGV-0070685_3	Structural annotation	PF04098, TIGR00607, COG5055	NA	NA
UHGV-0070685_4	PHROG	phrog_398	NA	unknown function
UHGV-0070685_4	UniRef90	UniRef90_UPI00137A6F13	putative HNHc nuclease	NA
UHGV-0070685_4	eggNOG-mapper	1485543.JMME01000021_gene802	Putative HNHc nuclease	NA
UHGV-0070685_4	Pfam	PF16784	Putative HNHc nuclease	HNHc_6
UHGV-0070685_4	Structural annotation	PF16784	NA	NA
UHGV-0070685_5	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0070685_5	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0070685_5	UniRef90	UniRef90_UPI001C0F768C	single-stranded DNA-binding protein	NA
UHGV-0070685_5	eggNOG-mapper	537013.CLOSTMETH_00062	Single-stranded DNA-binding protein	NA
UHGV-0070685_5	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0070685_5	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0070685_5	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0070685_5	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0070685_5	Structural annotation	PF00436, MF_00984, NF005579, COG0629	NA	NA
UHGV-0070685_6	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0070685_6	PHROG	phrog_5968	replisome organizer	DNA, RNA and nucleotide metabolism
UHGV-0070685_6	UniRef90	UniRef90_R6BMV4	Phage_rep_org_N domain-containing protein	NA
UHGV-0070685_6	eggNOG-mapper	1244083.CSUNSWCD_1478	NA	NA
UHGV-0070685_6	Pfam	PF09681	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
UHGV-0070685_6	NCBIFam	TIGR01714.1	phage replisome organizer, putative, N-terminal region	NA
UHGV-0070685_6	Structural annotation	PF09681, TIGR01714, COG3388	NA	NA
UHGV-0070685_9	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0070685_9	UniRef90	UniRef90_A0A6N2R4S8	Sigma70_r4 domain-containing protein	NA
UHGV-0070685_9	eggNOG-mapper	748727.CLJU_c03460	sigma factor activity	NA
UHGV-0070685_9	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0070685_9	Structural annotation	PF04545, MF_00674, NF009180, COG1342	NA	NA
UHGV-0070685_10	UniRef90	UniRef90_A0A4Z0Y8T7	Helix-turn-helix domain protein	NA
UHGV-0070685_10	eggNOG-mapper	1415774.U728_2928	Helix-turn-helix XRE-family like proteins	NA
UHGV-0070685_10	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0070685_10	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0070685_12	Structural annotation	NF007312, COG2336	NA	NA
UHGV-0070685_13	UniRef90	UniRef90_A0A1C6IDQ4	RHH_1 domain-containing protein	NA
UHGV-0070685_13	Pfam	PF01402	Ribbon-helix-helix protein, copG family	RHH_1
UHGV-0070685_13	Structural annotation	PF01402, NF010256	NA	NA
UHGV-0070685_14	AcrCatalog	cluster_44547	NA	NA
UHGV-0070685_15	UniRef90	UniRef90_UPI0009523D83	helix-turn-helix domain containing protein	NA
UHGV-0070685_15	eggNOG-mapper	1226322.HMPREF1545_00042	NA	NA
UHGV-0070685_15	Structural annotation	PF13542	NA	NA
UHGV-0070685_16	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0070685_16	PHROG	phrog_10250	NA	unknown function
UHGV-0070685_16	UniRef90	UniRef90_UPI000462EB3C	PBSX family phage terminase large subunit	NA
UHGV-0070685_16	eggNOG-mapper	1226322.HMPREF1545_00043	Phage terminase large subunit	NA
UHGV-0070685_16	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0070685_16	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0070685_16	COG	COG1783	Phage terminase large subunit	NA
UHGV-0070685_16	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0070685_17	PHROG	phrog_64	portal protein	head and packaging
UHGV-0070685_17	UniRef90	UniRef90_A0A1G9Z0H1	Phage portal protein, SPP1 family	NA
UHGV-0070685_17	eggNOG-mapper	1232449.BAHV02000008_gene628	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0070685_17	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0070685_17	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0070685_18	PHROG	phrog_115	minor head protein	head and packaging
UHGV-0070685_18	UniRef90	UniRef90_A0A410PZY6	Phage_Mu_F domain-containing protein	NA
UHGV-0070685_18	eggNOG-mapper	1232449.BAHV02000008_gene629	head morphogenesis protein, SPP1 gp7 family	NA
UHGV-0070685_18	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0070685_18	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0070685_18	COG	COG2369	NA	NA
UHGV-0070685_19	UniRef90	UniRef90_D5GY03	Conserved protein	NA
UHGV-0070685_19	eggNOG-mapper	1123489.AUAN01000010_gene361	NA	NA
UHGV-0070685_19	Structural annotation	PF20111	NA	NA
UHGV-0070685_20	UniRef90	UniRef90_R6C6L8	Fibronectin autolysin	NA
UHGV-0070685_20	Structural annotation	PF06810	NA	NA
UHGV-0070685_21	PHROG	phrog_283	major head protein	head and packaging
UHGV-0070685_21	UniRef90	UniRef90_A0A174ACN4	p22 coat protein-gene protein 5	NA
UHGV-0070685_21	eggNOG-mapper	1131462.DCF50_p1388	P22 coat protein - gene protein 5	NA
UHGV-0070685_21	Pfam	PF11651	P22 coat protein - gene protein 5	P22_CoatProtein
UHGV-0070685_21	Structural annotation	PF11651, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0070685_23	PHROG	phrog_615	head-tail adaptor	connector
UHGV-0070685_23	Structural annotation	PF12206, COG5614	NA	NA
UHGV-0070685_24	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0070685_24	UniRef90	UniRef90_UPI00082F3F7B	HK97 gp10 family phage protein	NA
UHGV-0070685_24	eggNOG-mapper	318464.IO99_00605	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0070685_24	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0070685_24	Structural annotation	PF04883, TIGR01725, COG5005	NA	NA
UHGV-0070685_25	eggNOG-mapper	1105031.HMPREF1141_0993	NA	NA
UHGV-0070685_25	Pfam	PF20765	NA	DUF6838
UHGV-0070685_26	PHROG	phrog_279	tail sheath	tail
UHGV-0070685_26	UniRef90	UniRef90_UPI00082FBA50	phage tail sheath subtilisin-like domain-containing protein	NA
UHGV-0070685_26	eggNOG-mapper	1121334.KB911071_gene1981	Phage tail sheath C-terminal domain	NA
UHGV-0070685_26	Pfam	PF04984	Phage tail sheath protein subtilisin-like domain	Phage_sheath_1
UHGV-0070685_26	Pfam	PF17482	Phage tail sheath C-terminal domain	Phage_sheath_1C
UHGV-0070685_26	Structural annotation	PF17482, PF04984, PF17481, COG4386	NA	NA
UHGV-0070685_27	PHROG	phrog_365	tail protein	tail
UHGV-0070685_27	UniRef90	UniRef90_A0A1G9Z2X5	Phage tail tube protein	NA
UHGV-0070685_27	eggNOG-mapper	1232449.BAHV02000008_gene639	Phage tail tube protein	NA
UHGV-0070685_27	Pfam	PF09393	Phage tail tube protein	DUF2001
UHGV-0070685_27	Structural annotation	PF09393, TIGR02241, COG5437	NA	NA
UHGV-0070685_28	PHROG	phrog_389	tail protein XkdN-like	tail
UHGV-0070685_28	UniRef90	UniRef90_A0A6N8HZT8	Phage XkdN-like tail assembly chaperone protein, TAC	NA
UHGV-0070685_28	eggNOG-mapper	1105031.HMPREF1141_0996	Phage XkdN-like tail assembly chaperone protein, TAC	NA
UHGV-0070685_28	Pfam	PF08890	Phage XkdN-like tail assembly chaperone protein, TAC	Phage_TAC_5
UHGV-0070685_28	Structural annotation	PF08890, COG4518	NA	NA
UHGV-0070685_29	eggNOG-mapper	1232449.BAHV02000008_gene641	sister chromatid segregation	NA
UHGV-0070685_29	COG	COG5281	Phage-related minor tail protein	NA
UHGV-0070685_29	Structural annotation	PF20155, TIGR01760	NA	NA
UHGV-0070685_30	PHROG	phrog_380	endolysin	lysis
UHGV-0070685_30	eggNOG-mapper	1105031.HMPREF1141_0999	NA	NA
UHGV-0070685_31	PHROG	phrog_400	tail protein	tail
UHGV-0070685_31	UniRef90	UniRef90_H5XZT6	Phage late control D protein (GPD)	NA
UHGV-0070685_31	eggNOG-mapper	1121334.KB911071_gene1976	PFAM Phage late control gene D protein (GPD)	NA
UHGV-0070685_31	COG	COG4193	Beta- N-acetylglucosaminidase	NA
UHGV-0070685_31	Structural annotation	PF14594, NF033848, COG3500	NA	NA
UHGV-0070685_32	Pfam	PF10844	NA	DUF2577
UHGV-0070685_33	PHROG	phrog_120	baseplate protein	tail
UHGV-0070685_33	UniRef90	UniRef90_UPI0005A8315B	NA	NA
UHGV-0070685_33	eggNOG-mapper	1121334.KB911071_gene1974	NA	NA
UHGV-0070685_33	Pfam	PF10934	NA	DUF2634
UHGV-0070685_33	COG	COG3628	Phage baseplate assembly protein W	NA
UHGV-0070685_33	Structural annotation	PF10934, TIGR03357, COG3628	NA	NA
UHGV-0070685_34	PHROG	phrog_6	baseplate protein	tail
UHGV-0070685_34	UniRef90	UniRef90_UPI0018985CC3	baseplate J/gp47 family protein	NA
UHGV-0070685_34	eggNOG-mapper	1105031.HMPREF1141_1407	Baseplate J-like protein	NA
UHGV-0070685_34	Pfam	PF04865	Baseplate J-like protein	Baseplate_J
UHGV-0070685_34	COG	COG3299	NA	NA
UHGV-0070685_34	Structural annotation	PF04865, PF21379, MF_04102, TIGR02243, COG3299	NA	NA
UHGV-0070685_35	PHROG	phrog_521	tail protein	tail
UHGV-0070685_35	UniRef90	UniRef90_UPI00189A40DF	NA	NA
UHGV-0070685_35	eggNOG-mapper	1121334.KB911071_gene1972	NA	NA
UHGV-0070685_35	Pfam	PF10076	Bacteriophage Mu-like, Gp48	Phage_Mu_Gp48
UHGV-0070685_35	COG	COG3778	NA	NA
UHGV-0070685_35	Structural annotation	PF10076, TIGR02242, COG3778	NA	NA
UHGV-0070685_36	eggNOG-mapper	1120949.KB903297_gene5520	Subtilase family	NA
UHGV-0070685_36	Pfam	PF21722	Glycine-rich domain	Gly_rich_2
UHGV-0070685_36	COG	COG1404	Serine protease, subtilisin family	NA
UHGV-0070685_36	Structural annotation	PF16323, PF16974, NF010681, COG3401	NA	NA
UHGV-0070685_38	PHROG	phrog_2310	NA	unknown function
UHGV-0070685_39	KOfam	K04095	fic; cell filamentation protein	NA
UHGV-0070685_39	PHROG	phrog_12747	NA	unknown function
UHGV-0070685_39	UniRef90	UniRef90_I5AQA7	Protein involved in cell division	NA
UHGV-0070685_39	eggNOG-mapper	633697.EubceDRAFT1_0116	Fic/DOC family	NA
UHGV-0070685_39	Pfam	PF02661	Fic/DOC family	Fic
UHGV-0070685_39	COG	COG2184	Fido, protein-threonine AMPylation domain	NA
UHGV-0070685_39	Structural annotation	PF02661, NF007672, COG2184	NA	NA
UHGV-0070685_41	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0070685_41	PHROG	phrog_63	anti-repressor Ant	transcription regulation
UHGV-0070685_41	UniRef90	UniRef90_UPI001C0F4BC0	phage antirepressor KilAC domain-containing protein	NA
UHGV-0070685_41	eggNOG-mapper	1232443.BAIA02000079_gene53	AntA/AntB antirepressor	NA
UHGV-0070685_41	Pfam	PF08346	AntA/AntB antirepressor	AntA
UHGV-0070685_41	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0070685_41	COG	COG3561	Phage anti-repressor protein Ant	NA
UHGV-0070685_41	Structural annotation	PF03374, PF08346, TIGR02681, COG3645, COG3561	NA	NA
UHGV-0070685_42	PHROG	phrog_1129	holin	lysis
UHGV-0070685_42	UniRef90	UniRef90_UPI00085C0D7A	phage holin family protein	NA
UHGV-0070685_42	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0070685_42	Structural annotation	PF06946	NA	NA
UHGV-0070685_43	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0070685_43	PHROG	phrog_435	endolysin	lysis
UHGV-0070685_43	UniRef90	UniRef90_A0A349YQC4	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0070685_43	eggNOG-mapper	1203606.HMPREF1526_00962	Ami_3	NA
UHGV-0070685_43	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0070685_43	Pfam	PF05036	SPOR domain	SPOR
UHGV-0070685_43	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0070685_43	Structural annotation	PF01520, PF05036, MF_02022, MF_00562, TIGR02883, COG0860, COG3147	NA	NA
UHGV-0070685_44	PHROG	phrog_36029	NA	unknown function
UHGV-0070685_44	UniRef90	UniRef90_A0A318KD97	Superfamily 6 holin (LLH)	NA
UHGV-0070685_44	eggNOG-mapper	1232449.BAHV02000016_gene1809	NA	NA
UHGV-0070685_45	Structural annotation	PF07454, MF_00562, NF003072, COG2185	NA	NA
UHGV-0070685_46	PHROG	phrog_4105	NA	unknown function
UHGV-0070685_46	eggNOG-mapper	1291050.JAGE01000001_gene433	NA	NA
UHGV-0070685_47	AcrCatalog	cluster_86620	NA	NA
UHGV-0070685_49	UniRef90	UniRef90_A0A7X2NE42	DNA-binding protein	NA
UHGV-0070685_49	eggNOG-mapper	1394176.AWUO01000011_gene405	NA	NA