UHGV-0070703

Genome information

Genome length 42,334 bps

CDS count 49

Completeness 100.00% (complete)

geNomad score 0.9827

Prediction confidence Confident

Genome information
Genome ID	UHGV-0070703
vOTU ID	vOTU-045099
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_119489
BioSample	NA
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	ITR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	31
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9827
Virus hallmark genes (geNomad)	19
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	61.24
Jumbo phage	No

Genome content
Genome length	42,334 bps
GC content	39.28%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	49
CDS density	96.75%
Average CDS length	838.84 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0070703_2	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0070703_2	PHROG	phrog_5902	NA	unknown function
UHGV-0070703_2	UniRef90	UniRef90_A0A373VKG5	Terminase B	NA
UHGV-0070703_2	eggNOG-mapper	457412.RSAG_04669	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD	NA
UHGV-0070703_2	COG	COG0507	ATPase/5'-3' helicase helicase subunit RecD of the DNA repair enzyme RecBCD (exonuclease V)	NA
UHGV-0070703_2	Structural annotation	PF04466, PF20441, MF_04145, TIGR01547, COG4373	NA	NA
UHGV-0070703_3	PHROG	phrog_113	portal protein	head and packaging
UHGV-0070703_3	UniRef90	UniRef90_A0A173Z568	Mu-like prophage protein gp29	NA
UHGV-0070703_3	eggNOG-mapper	457412.RSAG_01145	Mu-like prophage protein gp29	NA
UHGV-0070703_3	Pfam	PF06074	NA	DUF935
UHGV-0070703_3	COG	COG4383	NA	NA
UHGV-0070703_3	Structural annotation	PF06074, MF_04135, TIGR01537, COG4383	NA	NA
UHGV-0070703_4	PHROG	phrog_28652	NA	unknown function
UHGV-0070703_4	UniRef90	UniRef90_D4MX39	Phage Mu protein F like protein	NA
UHGV-0070703_4	eggNOG-mapper	1200557.JHWV01000006_gene1730	Phage Mu protein F like protein	NA
UHGV-0070703_4	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0070703_4	Pfam	PF03496	ADP-ribosyltransferase exoenzyme	ADPrib_exo_Tox
UHGV-0070703_4	COG	COG2369	NA	NA
UHGV-0070703_4	Structural annotation	PF04233, TIGR01641	NA	NA
UHGV-0070703_6	PHROG	phrog_13199	NA	unknown function
UHGV-0070703_6	Structural annotation	PF14083	NA	NA
UHGV-0070703_7	PHROG	phrog_1530	DNA methyltransferase	other
UHGV-0070703_7	UniRef90	UniRef90_A0A173S093	Peptidase_S78_2 domain-containing protein	NA
UHGV-0070703_7	eggNOG-mapper	457412.RSAG_01143	Putative phage serine protease XkdF	NA
UHGV-0070703_7	Pfam	PF14550	Putative phage serine protease XkdF	Peptidase_S78_2
UHGV-0070703_7	Structural annotation	PF14550	NA	NA
UHGV-0070703_8	PHROG	phrog_1048	NA	unknown function
UHGV-0070703_8	UniRef90	UniRef90_A0A395V4Z5	NA	NA
UHGV-0070703_8	eggNOG-mapper	457412.RSAG_01107	NA	NA
UHGV-0070703_8	Pfam	PF11195	NA	DUF2829
UHGV-0070703_8	dbAPIS	APIS029	Tad2 is a "sponge" that sequesters the immune signaling molecules produced by Thoeris TIR-domain proteins in response to phage.	NA
UHGV-0070703_8	Structural annotation	PF11195	NA	NA
UHGV-0070703_9	PHROG	phrog_17741	NA	unknown function
UHGV-0070703_9	eggNOG-mapper	1200557.JHWV01000006_gene1727	NA	NA
UHGV-0070703_10	PHROG	phrog_673	head scaffolding protein	head and packaging
UHGV-0070703_10	UniRef90	UniRef90_R7NBD5	Head fiber protein	NA
UHGV-0070703_10	eggNOG-mapper	1200557.JHWV01000006_gene1726	NA	NA
UHGV-0070703_10	Structural annotation	PF11133, COG5471	NA	NA
UHGV-0070703_11	PHROG	phrog_1005	major head protein	head and packaging
UHGV-0070703_11	eggNOG-mapper	1200557.JHWV01000006_gene1725	NA	NA
UHGV-0070703_11	Structural annotation	PF03864, MF_04133, NF041162, COG1659	NA	NA
UHGV-0070703_12	PHROG	phrog_17721	NA	unknown function
UHGV-0070703_13	PHROG	phrog_1732	NA	unknown function
UHGV-0070703_13	eggNOG-mapper	537013.CLOSTMETH_01735	NA	NA
UHGV-0070703_14	PHROG	phrog_17290	NA	unknown function
UHGV-0070703_14	eggNOG-mapper	1200557.JHWV01000006_gene1722	NA	NA
UHGV-0070703_14	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0070703_15	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0070703_15	UniRef90	UniRef90_D4MX49	Phage protein, HK97 gp10 family	NA
UHGV-0070703_15	eggNOG-mapper	1235793.C809_02234	NA	NA
UHGV-0070703_15	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0070703_15	Structural annotation	TIGR01725, COG5005	NA	NA
UHGV-0070703_16	PHROG	phrog_2146	NA	unknown function
UHGV-0070703_16	eggNOG-mapper	1232447.BAHW02000005_gene157	NA	NA
UHGV-0070703_16	Structural annotation	PF11367, PF20765	NA	NA
UHGV-0070703_17	PHROG	phrog_1939	NA	unknown function
UHGV-0070703_17	eggNOG-mapper	411490.ANACAC_00612	NA	NA
UHGV-0070703_18	PHROG	phrog_279	tail sheath	tail
UHGV-0070703_18	UniRef90	UniRef90_L1Q5Z9	Phage_sheath_1 domain-containing protein	NA
UHGV-0070703_18	eggNOG-mapper	1232447.BAHW02000005_gene159	PFAM Phage tail sheath protein	NA
UHGV-0070703_18	Pfam	PF17481	Phage tail sheath protein beta-sandwich domain	Phage_sheath_1N
UHGV-0070703_18	Pfam	PF04984	Phage tail sheath protein subtilisin-like domain	Phage_sheath_1
UHGV-0070703_18	Structural annotation	PF10758, TIGR03355, COG4386	NA	NA
UHGV-0070703_19	PHROG	phrog_365	tail protein	tail
UHGV-0070703_19	UniRef90	UniRef90_A0A3A9HQP9	ATP-binding protein	NA
UHGV-0070703_19	eggNOG-mapper	411490.ANACAC_00610	NA	NA
UHGV-0070703_19	Structural annotation	PF09393, TIGR02241, COG3498	NA	NA
UHGV-0070703_20	PHROG	phrog_389	tail protein XkdN-like	tail
UHGV-0070703_20	UniRef90	UniRef90_D4MWG4	Phage XkdN-like protein	NA
UHGV-0070703_20	eggNOG-mapper	411490.ANACAC_00609	NA	NA
UHGV-0070703_20	Pfam	PF08890	Phage XkdN-like tail assembly chaperone protein, TAC	Phage_TAC_5
UHGV-0070703_20	Structural annotation	PF08890, COG4518	NA	NA
UHGV-0070703_21	PHROG	phrog_16692	NA	unknown function
UHGV-0070703_21	UniRef90	UniRef90_B0P3G5	Tape measure domain protein	NA
UHGV-0070703_21	eggNOG-mapper	697281.Mahau_0585	tape measure	NA
UHGV-0070703_21	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0070703_21	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0070703_21	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0070703_22	PHROG	phrog_380	endolysin	lysis
UHGV-0070703_22	UniRef90	UniRef90_D4MWY5	LysM domain./Putative peptidoglycan binding domain	NA
UHGV-0070703_22	eggNOG-mapper	1232447.BAHW02000007_gene166	LysM domain	NA
UHGV-0070703_22	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0070703_22	COG	COG1652	Cytoplasmic potassium-binding protein Kbp/XkdP/YgaU, contains LysM domain	NA
UHGV-0070703_22	Structural annotation	PF19266, PF01471, MF_02014, TIGR02126, NF010723, COG3499, COG1388	NA	NA
UHGV-0070703_23	PHROG	phrog_400	tail protein	tail
UHGV-0070703_23	UniRef90	UniRef90_A0A173RCR6	Mu-like prophage tail protein gpP	NA
UHGV-0070703_23	eggNOG-mapper	411490.ANACAC_00605	3D domain protein	NA
UHGV-0070703_23	COG	COG3584	3D (Asp-Asp-Asp) domain, usually in lytic transglycosylases	NA
UHGV-0070703_23	Structural annotation	PF14594, MF_01370, NF033848, COG4379	NA	NA
UHGV-0070703_25	PHROG	phrog_120	baseplate protein	tail
UHGV-0070703_25	UniRef90	UniRef90_UPI0006DBF613	NA	NA
UHGV-0070703_25	eggNOG-mapper	411490.ANACAC_00603	NA	NA
UHGV-0070703_25	Pfam	PF10934	NA	DUF2634
UHGV-0070703_25	Structural annotation	PF10934, TIGR03357, COG3628	NA	NA
UHGV-0070703_26	PHROG	phrog_6	baseplate protein	tail
UHGV-0070703_26	UniRef90	UniRef90_A0A2V2ERV4	Baseplate protein J	NA
UHGV-0070703_26	eggNOG-mapper	1232447.BAHW02000007_gene170	baseplate J-like protein	NA
UHGV-0070703_26	Pfam	PF04865	Baseplate J-like protein	Baseplate_J
UHGV-0070703_26	COG	COG3299	NA	NA
UHGV-0070703_26	Structural annotation	PF04865, PF21379, MF_04102, TIGR02243, COG3299	NA	NA
UHGV-0070703_27	PHROG	phrog_21322	virion structural protein	head and packaging
UHGV-0070703_27	UniRef90	UniRef90_UPI001C397804	YmfQ family protein	NA
UHGV-0070703_27	eggNOG-mapper	411490.ANACAC_00601	NA	NA
UHGV-0070703_27	Pfam	PF10076	Bacteriophage Mu-like, Gp48	Phage_Mu_Gp48
UHGV-0070703_27	COG	COG4385	Bacteriophage P2-related tail formation protein	NA
UHGV-0070703_27	Structural annotation	PF10076, TIGR02242, COG3778	NA	NA
UHGV-0070703_28	PHROG	phrog_7037	tail fiber protein	tail
UHGV-0070703_28	UniRef90	UniRef90_UPI00164A2069	phage tail protein	NA
UHGV-0070703_28	eggNOG-mapper	33035.JPJF01000033_gene2261	tail collar domain protein	NA
UHGV-0070703_28	COG	COG4675	Phage tail collar domain	NA
UHGV-0070703_31	PHROG	phrog_18608	NA	unknown function
UHGV-0070703_31	eggNOG-mapper	665956.HMPREF1032_02937	cellulose 1,4-beta-cellobiosidase activity	NA
UHGV-0070703_31	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-0070703_32	PHROG	phrog_3558	tail protein	tail
UHGV-0070703_32	UniRef90	UniRef90_A0A417UT74	Prophage_tail domain-containing protein	NA
UHGV-0070703_32	eggNOG-mapper	411490.ANACAC_00708	Phage minor structural protein	NA
UHGV-0070703_32	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0070703_32	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0070703_32	COG	COG4926	Phage-related protein	NA
UHGV-0070703_32	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0070703_33	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0070703_33	UniRef90	UniRef90_A0A417USV5	MtfA protein	NA
UHGV-0070703_33	eggNOG-mapper	411490.ANACAC_00709	phage tail	NA
UHGV-0070703_33	COG	COG4722	Phage-related protein YomH	NA
UHGV-0070703_33	Structural annotation	PF05709, PF02408, TIGR01633, COG4722	NA	NA
UHGV-0070703_34	KOfam	K10402	KIF20; kinesin family member 20	NA
UHGV-0070703_34	PHROG	phrog_13339	tail length tape measure protein	tail
UHGV-0070703_34	UniRef90	UniRef90_A0A6N2R4D3	Chromosome partition protein Smc	NA
UHGV-0070703_34	eggNOG-mapper	411490.ANACAC_00710	Phage tail tape measure protein, TP901 family	NA
UHGV-0070703_34	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0070703_34	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0070703_34	COG	COG5283	Phage-related tail protein	NA
UHGV-0070703_34	Structural annotation	PF10145, TIGR01760	NA	NA
UHGV-0070703_35	PHROG	phrog_706	NA	unknown function
UHGV-0070703_35	UniRef90	UniRef90_A0A6N2R3Z6	Bacteriophage Gp15 protein	NA
UHGV-0070703_35	eggNOG-mapper	1235799.C818_04230	Bacteriophage Gp15 protein	NA
UHGV-0070703_35	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0070703_35	Structural annotation	PF06854	NA	NA
UHGV-0070703_36	PHROG	phrog_4450	NA	unknown function
UHGV-0070703_36	eggNOG-mapper	1235799.C818_04229	NA	NA
UHGV-0070703_36	Pfam	PF20378	NA	DUF6673
UHGV-0070703_36	Structural annotation	PF20378	NA	NA
UHGV-0070703_37	PHROG	phrog_3099	NA	unknown function
UHGV-0070703_37	UniRef90	UniRef90_T3DT99	S-l_SbsC_C domain-containing protein	NA
UHGV-0070703_37	eggNOG-mapper	411490.ANACAC_00772	NA	NA
UHGV-0070703_37	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0070703_38	PHROG	phrog_3266	tail completion	connector
UHGV-0070703_38	UniRef90	UniRef90_A0A417QFW9	Chloramphenicol resistance protein	NA
UHGV-0070703_38	eggNOG-mapper	1235799.C818_04227	NA	NA
UHGV-0070703_38	Structural annotation	PF12691	NA	NA
UHGV-0070703_39	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0070703_39	UniRef90	UniRef90_A0A417USU6	Capsid protein	NA
UHGV-0070703_39	eggNOG-mapper	411490.ANACAC_00774	Minor capsid protein	NA
UHGV-0070703_39	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0070703_39	Structural annotation	PF11114	NA	NA
UHGV-0070703_40	PHROG	phrog_3366	NA	unknown function
UHGV-0070703_40	eggNOG-mapper	1235799.C818_04225	NA	NA
UHGV-0070703_40	Pfam	PF20536	NA	DUF6751
UHGV-0070703_40	Structural annotation	PF20536, TIGR01563, COG5614	NA	NA
UHGV-0070703_41	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0070703_41	eggNOG-mapper	411490.ANACAC_00776	NA	NA
UHGV-0070703_42	PHROG	phrog_247	major head protein	head and packaging
UHGV-0070703_42	UniRef90	UniRef90_A0A417UT84	Phage coat protein	NA
UHGV-0070703_42	eggNOG-mapper	445335.CBN_1379	NA	NA
UHGV-0070703_42	COG	COG1106	ATPase/GTPase, AAA15 family	NA
UHGV-0070703_42	Structural annotation	PF20036, MF_04113, TIGR04387, COG4653	NA	NA
UHGV-0070703_43	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0070703_43	UniRef90	UniRef90_B0MB52	Phage minor structural protein GP20	NA
UHGV-0070703_43	eggNOG-mapper	411490.ANACAC_00778	COG NOG36366 non supervised orthologous group	NA
UHGV-0070703_43	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0070703_43	Structural annotation	PF06810, MF_02110	NA	NA
UHGV-0070703_44	PHROG	phrog_3675	NA	unknown function
UHGV-0070703_44	UniRef90	UniRef90_UPI001C02868E	YjcQ family protein	NA
UHGV-0070703_44	eggNOG-mapper	1235799.C818_04221	YjcQ protein	NA
UHGV-0070703_44	Pfam	PF09639	YjcQ protein	YjcQ
UHGV-0070703_44	Structural annotation	PF09639, TIGR04176, COG2345	NA	NA
UHGV-0070703_46	KOfam	K11044	spyA; C3 family ADP-ribosyltransferase [EC:2.4.2.-]	NA
UHGV-0070703_46	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0070703_46	UniRef90	UniRef90_A0A1Q6KF97	ADPrib_exo_Tox domain-containing protein	NA
UHGV-0070703_46	eggNOG-mapper	411490.ANACAC_00781	NA	NA
UHGV-0070703_46	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0070703_46	Pfam	PF03496	ADP-ribosyltransferase exoenzyme	ADPrib_exo_Tox
UHGV-0070703_46	COG	COG2369	NA	NA
UHGV-0070703_46	Structural annotation	PF06152, PF03496, MF_04139, NF041404	NA	NA
UHGV-0070703_47	PHROG	phrog_533	portal protein	head and packaging
UHGV-0070703_47	UniRef90	UniRef90_A0A1Q2C496	Phage capsid protein	NA
UHGV-0070703_47	eggNOG-mapper	411490.ANACAC_00782	NA	NA
UHGV-0070703_47	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0070703_47	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0070703_48	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0070703_48	PHROG	phrog_10250	NA	unknown function
UHGV-0070703_48	UniRef90	UniRef90_A0A1Q2C436	Terminase	NA
UHGV-0070703_48	eggNOG-mapper	411490.ANACAC_00783	Phage terminase, large subunit, PBSX family	NA
UHGV-0070703_48	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0070703_48	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0070703_48	COG	COG1783	Phage terminase large subunit	NA
UHGV-0070703_48	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0070703_49	eggNOG-mapper	411490.ANACAC_00784	terminase, small subunit	NA
UHGV-0070703_49	COG	COG3728	Phage terminase, small subunit	NA