UHGV-0070769

Genome information

Genome length 27,710 bps

CDS count 43

Completeness 74.67% (medium-quality)

geNomad score 0.9681

Prediction confidence Confident

Genome information
Genome ID	UHGV-0070769
vOTU ID	vOTU-029877
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_109044
BioSample	NA
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	74.67% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9681
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	30.51
Jumbo phage	No

Genome content
Genome length	27,710 bps
GC content	28.53%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	43
CDS density	93.08%
Average CDS length	603.35 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0070769_1	COG	COG3274	Surface polysaccharide O-acyltransferase WecH	NA
UHGV-0070769_2	eggNOG-mapper	1274374.CBLK010000063_gene801	cellulose 1,4-beta-cellobiosidase activity	NA
UHGV-0070769_2	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-0070769_3	KOfam	K01198	xynB; xylan 1,4-beta-xylosidase [EC:3.2.1.37]	NA
UHGV-0070769_3	PHROG	phrog_24388	NA	unknown function
UHGV-0070769_3	eggNOG-mapper	1414720.CBYM010000001_gene710	NA	NA
UHGV-0070769_3	Pfam	PF04616	Glycosyl hydrolases family 43	Glyco_hydro_43
UHGV-0070769_4	Structural annotation	PF13157, MF_01372, NF040827, COG3542	NA	NA
UHGV-0070769_5	PHROG	phrog_3558	tail protein	tail
UHGV-0070769_5	UniRef90	UniRef90_A0A1C6KQ97	Phage-related protein	NA
UHGV-0070769_5	eggNOG-mapper	1414720.CBYM010000040_gene1657	Phage minor structural protein, N-terminal	NA
UHGV-0070769_5	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0070769_5	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0070769_5	COG	COG4926	Phage-related protein	NA
UHGV-0070769_5	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0070769_6	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0070769_6	UniRef90	UniRef90_A0A1C6KPN3	Phage-related protein	NA
UHGV-0070769_6	eggNOG-mapper	1414720.CBYM010000001_gene708	PFAM Phage tail protein	NA
UHGV-0070769_6	COG	COG4722	Phage-related protein YomH	NA
UHGV-0070769_6	Structural annotation	PF20195, PF21621, TIGR01633, COG4722	NA	NA
UHGV-0070769_7	PHROG	phrog_1272	tail length tape measure protein	tail
UHGV-0070769_7	UniRef90	UniRef90_A0A1C5VEY4	Phage-related minor tail protein	NA
UHGV-0070769_7	eggNOG-mapper	588581.Cpap_1264	Tail tape measure protein, TP901 family	NA
UHGV-0070769_7	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0070769_7	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0070769_7	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0070769_8	eggNOG-mapper	1219626.HMPREF1639_07460	NA	NA
UHGV-0070769_9	eggNOG-mapper	411902.CLOBOL_03873	NA	NA
UHGV-0070769_9	Structural annotation	PF17388	NA	NA
UHGV-0070769_10	PHROG	phrog_2175	protein with Ig domain	other
UHGV-0070769_10	eggNOG-mapper	588581.Cpap_1267	NA	NA
UHGV-0070769_10	Structural annotation	PF04630, TIGR01603, COG5437	NA	NA
UHGV-0070769_11	eggNOG-mapper	698758.AXY_02180	NA	NA
UHGV-0070769_11	Structural annotation	PF05657, MF_00281, COG0016	NA	NA
UHGV-0070769_12	eggNOG-mapper	86416.Clopa_0344	NA	NA
UHGV-0070769_12	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0070769_12	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0070769_13	PHROG	phrog_19734	NA	unknown function
UHGV-0070769_13	UniRef90	UniRef90_UPI00057FE645	phage head closure protein	NA
UHGV-0070769_13	eggNOG-mapper	86416.Clopa_0343	NA	NA
UHGV-0070769_13	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0070769_14	PHROG	phrog_749	NA	unknown function
UHGV-0070769_14	eggNOG-mapper	1415774.U728_1251	NA	NA
UHGV-0070769_15	PHROG	phrog_10	major head protein	head and packaging
UHGV-0070769_15	UniRef90	UniRef90_UPI0008304135	phage major capsid protein	NA
UHGV-0070769_15	eggNOG-mapper	1211817.CCAT010000053_gene2132	Phage capsid family	NA
UHGV-0070769_15	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0070769_15	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0070769_15	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0070769_15	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0070769_16	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0070769_16	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0070769_16	UniRef90	UniRef90_A0A6B4KMA0	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0070769_16	eggNOG-mapper	1415774.U728_1253	Belongs to the peptidase S14 family	NA
UHGV-0070769_16	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0070769_16	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0070769_16	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA
UHGV-0070769_17	PHROG	phrog_12	portal protein	head and packaging
UHGV-0070769_17	UniRef90	UniRef90_UPI001A9A8447	phage portal protein	NA
UHGV-0070769_17	eggNOG-mapper	1211817.CCAT010000053_gene2130	Phage portal protein	NA
UHGV-0070769_17	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0070769_17	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0070769_17	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0070769_17	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0070769_18	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0070769_18	UniRef90	UniRef90_A0A3D3TQL2	Terminase large subunit	NA
UHGV-0070769_18	eggNOG-mapper	1211817.CCAT010000053_gene2129	Phage Terminase	NA
UHGV-0070769_18	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0070769_18	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0070769_18	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0070769_18	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0070769_19	PHROG	phrog_5110	terminase small subunit	head and packaging
UHGV-0070769_19	UniRef90	UniRef90_A0A0F3FVP5	RNA polymerase sigma 70	NA
UHGV-0070769_19	eggNOG-mapper	1211817.CCAT010000008_gene938	Phage terminase, small subunit	NA
UHGV-0070769_19	Pfam	PF06056	Putative ATPase subunit of terminase (gpP-like)	Terminase_5
UHGV-0070769_19	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0070769_19	COG	COG5484	NA	NA
UHGV-0070769_19	Structural annotation	PF05119, PF06056, TIGR01558, COG3747	NA	NA
UHGV-0070769_20	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0070769_20	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0070769_20	UniRef90	UniRef90_UPI001178285D	HNH endonuclease	NA
UHGV-0070769_20	eggNOG-mapper	1415774.U728_1257	HNH nucleases	NA
UHGV-0070769_20	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0070769_20	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0070769_21	PHROG	phrog_17982	NA	unknown function
UHGV-0070769_21	UniRef90	UniRef90_A0A4Z0RAM2	NA	NA
UHGV-0070769_21	eggNOG-mapper	479433.Caci_8546	NA	NA
UHGV-0070769_21	Pfam	PF14020	NA	DUF4236
UHGV-0070769_22	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0070769_22	PHROG	phrog_216	integrase	integration and excision
UHGV-0070769_22	UniRef90	UniRef90_A0A1F1KZD3	Integrase	NA
UHGV-0070769_22	eggNOG-mapper	1415774.U728_1259	integrase family	NA
UHGV-0070769_22	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0070769_22	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0070769_22	Structural annotation	PF00589, MF_02055, NF040815, COG4973	NA	NA
UHGV-0070769_23	PHROG	phrog_3928	NA	unknown function
UHGV-0070769_23	eggNOG-mapper	1414720.CBYM010000040_gene1639	NA	NA
UHGV-0070769_24	PHROG	phrog_248	transcriptional activator	transcription regulation
UHGV-0070769_24	UniRef90	UniRef90_UPI0018AC4BDF	nitroreductase	NA
UHGV-0070769_24	eggNOG-mapper	1443122.Z958_05945	NA	NA
UHGV-0070769_24	Structural annotation	PF08281, MF_00674, TIGR01636, COG1191	NA	NA
UHGV-0070769_27	eggNOG-mapper	999411.HMPREF1092_03351	NA	NA
UHGV-0070769_31	Structural annotation	PF11148, MF_01553, COG5503	NA	NA
UHGV-0070769_32	PHROG	phrog_323	endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0070769_32	UniRef90	UniRef90_A0A410PPK7	HTH myb-type domain-containing protein	NA
UHGV-0070769_32	eggNOG-mapper	1196322.A370_05734	SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains	NA
UHGV-0070769_32	Pfam	PF13921	Myb-like DNA-binding domain	Myb_DNA-bind_6
UHGV-0070769_32	Pfam	PF07750	GcrA cell cycle regulator	GcrA
UHGV-0070769_32	dbAPIS	APIS006	Trigger programmed cell death (PCD) by P4 prophage.	NA
UHGV-0070769_32	Structural annotation	PF01710, NF040595, COG5147	NA	NA
UHGV-0070769_33	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0070769_33	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0070769_33	UniRef90	UniRef90_A0A1C6K8T2	Single-stranded DNA-binding protein	NA
UHGV-0070769_33	eggNOG-mapper	1414720.CBYM010000001_gene680	Single-stranded DNA-binding protein	NA
UHGV-0070769_33	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0070769_33	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0070769_33	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0070769_33	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0070769_33	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0070769_36	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0070769_36	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0070769_36	UniRef90	UniRef90_A0A1C6JJ89	DNA replication protein	NA
UHGV-0070769_36	eggNOG-mapper	1414720.CBYM010000001_gene676	PFAM IstB-like ATP binding protein	NA
UHGV-0070769_36	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-0070769_36	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0070769_36	Structural annotation	PF01695, MF_01919, NF005378, COG1484	NA	NA
UHGV-0070769_37	PHROG	phrog_10469	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0070769_37	UniRef90	UniRef90_A0A1C6JID6	Phage replisome organizer, putative, N-terminal region	NA
UHGV-0070769_37	eggNOG-mapper	1414720.CBYM010000001_gene675	N-terminal phage replisome organiser (Phage_rep_org_N)	NA
UHGV-0070769_37	Pfam	PF09681	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
UHGV-0070769_37	NCBIFam	TIGR01714.1	phage replisome organizer, putative, N-terminal region	NA
UHGV-0070769_37	Structural annotation	PF09681, PF09524, TIGR01714, TIGR02220, COG3388	NA	NA
UHGV-0070769_38	UniRef90	UniRef90_A0A1C6HV05	Spo0E like sporulation regulatory protein	NA
UHGV-0070769_38	Pfam	PF09388	Spo0E like sporulation regulatory protein	SpoOE-like
UHGV-0070769_38	Structural annotation	PF09388	NA	NA
UHGV-0070769_39	PHROG	phrog_373	anti-repressor	transcription regulation
UHGV-0070769_39	UniRef90	UniRef90_UPI0018AC2428	Rha family transcriptional regulator	NA
UHGV-0070769_39	eggNOG-mapper	1414720.CBYM010000002_gene582	ORF6C domain	NA
UHGV-0070769_39	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-0070769_39	Pfam	PF10552	ORF6C domain	ORF6C
UHGV-0070769_39	NCBIFam	TIGR02681.1	phage regulatory protein, Rha family	NA
UHGV-0070769_39	COG	COG3646	Phage regulatory protein Rha	NA
UHGV-0070769_39	Structural annotation	PF10552, PF09669, TIGR02681, COG3646	NA	NA
UHGV-0070769_42	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0070769_42	UniRef90	UniRef90_A0A3P6KM31	Transcriptional regulator	NA
UHGV-0070769_42	eggNOG-mapper	1128398.Curi_c22140	Helix-turn-helix XRE-family like proteins	NA
UHGV-0070769_42	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-0070769_42	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0070769_42	Structural annotation	PF13560, MF_00535, NF007257, COG1396	NA	NA
UHGV-0070769_43	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0070769_43	PHROG	phrog_95	integrase	integration and excision
UHGV-0070769_43	UniRef90	UniRef90_UPI0018AC52BE	recombinase family protein	NA
UHGV-0070769_43	eggNOG-mapper	1128398.Curi_c22150	Resolvase, N terminal domain	NA
UHGV-0070769_43	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0070769_43	Pfam	PF07508	Recombinase	Recombinase
UHGV-0070769_43	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0070769_43	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0070769_43	Structural annotation	PF07508, PF00239, PF13408, NF041201, COG1961	NA	NA