UHGV-0070807

Genome information

vOTU vOTU-019832

Genome length 17,616 bps

CDS count 20

Completeness 58.64% (medium-quality)

geNomad score 0.9776

Prediction confidence Confident

Genome information
Genome ID	UHGV-0070807
vOTU ID	vOTU-019832
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_131213
BioSample	SAMEA2737802
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	HMM-based
CheckV completeness	58.64% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	5
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9776
Virus hallmark genes (geNomad)	3
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	14.49
Jumbo phage	No

Genome content
Genome length	17,616 bps
GC content	47.56%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	20
CDS density	91.51%
Average CDS length	809.10 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0070807_2	UniRef90	UniRef90_D2Q8X8	SGNH_hydro domain-containing protein	NA
UHGV-0070807_2	eggNOG-mapper	401473.BDP_1475	NA	NA
UHGV-0070807_2	Structural annotation	PF14606, PF08931, NF007819, COG2755	NA	NA
UHGV-0070807_6	PHROG	phrog_2038	upper collar connector	connector
UHGV-0070807_6	UniRef90	UniRef90_A0A345BNP3	Upper collar protein	NA
UHGV-0070807_6	eggNOG-mapper	10756.PORTL_BPPH2	Phage Connector (GP10)	NA
UHGV-0070807_6	Pfam	PF05352	Phage Connector (GP10)	Phage_connector
UHGV-0070807_6	Structural annotation	PF05352, TIGR01538, COG4695	NA	NA
UHGV-0070807_7	PHROG	phrog_2248	tail protein	tail
UHGV-0070807_7	eggNOG-mapper	338473.A6XAD6_9CAUD	NA	NA
UHGV-0070807_7	Structural annotation	PF20934, PF16838	NA	NA
UHGV-0070807_8	PHROG	phrog_2006	major head protein	head and packaging
UHGV-0070807_8	UniRef90	UniRef90_A0A3G3LXZ7	Major capsid protein	NA
UHGV-0070807_8	eggNOG-mapper	338473.A6XAD5_9CAUD	viral capsid	NA
UHGV-0070807_8	Structural annotation	PF19821, PF02368, MF_04119, NF033394, COG1659	NA	NA
UHGV-0070807_10	PHROG	phrog_2150	terminase	head and packaging
UHGV-0070807_10	UniRef90	UniRef90_A0A843HJW2	Phage DNA encapsidation protein	NA
UHGV-0070807_10	eggNOG-mapper	10753.B7SSN7_BPNF	Podovirus DNA encapsidation protein (Gp16)	NA
UHGV-0070807_10	Pfam	PF05894	Podovirus DNA encapsidation protein (Gp16)	Podovirus_Gp16
UHGV-0070807_10	Structural annotation	PF05894, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0070807_11	PHROG	phrog_1907	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0070807_11	Structural annotation	PF03175, MF_04055, NF004419, COG0417	NA	NA
UHGV-0070807_13	Pfam	PF17427	Phage Single-stranded DNA-binding protein	Phi29_Phage_SSB
UHGV-0070807_13	Structural annotation	PF17427	NA	NA
UHGV-0070807_14	Structural annotation	PF17548	NA	NA
UHGV-0070807_15	KOfam	K07273	acm; lysozyme	NA
UHGV-0070807_15	PHROG	phrog_291	endolysin	lysis
UHGV-0070807_15	UniRef90	UniRef90_UPI00195EE7EA	LysM peptidoglycan-binding domain-containing protein	NA
UHGV-0070807_15	eggNOG-mapper	78345.BMERY_0862	Glycosyl hydrolases family 25	NA
UHGV-0070807_15	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0070807_15	Pfam	PF01476	LysM domain	LysM
UHGV-0070807_15	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0070807_15	Structural annotation	PF01183, NF003645, COG3757	NA	NA
UHGV-0070807_17	Structural annotation	PF11680	NA	NA
UHGV-0070807_20	KOfam	K07079	NA	NA
UHGV-0070807_20	PHROG	phrog_8735	NA	unknown function
UHGV-0070807_20	UniRef90	UniRef90_A0A1C6GF08	Putative oxidoreductase	NA
UHGV-0070807_20	eggNOG-mapper	357809.Cphy_3061	4Fe-4S dicluster domain	NA
UHGV-0070807_20	Pfam	PF00248	Aldo/keto reductase family	Aldo_ket_red
UHGV-0070807_20	Pfam	PF13183	4Fe-4S dicluster domain	Fer4_8
UHGV-0070807_20	COG	COG1453	Predicted oxidoreductase of the aldo/keto reductase family	NA
UHGV-0070807_20	Structural annotation	PF00248, MF_02227, NF007912, COG1453	NA	NA