UHGV-0070839

Genome information

Genome length 34,871 bps

CDS count 49

Completeness 51.02% (medium-quality)

geNomad score 0.9618

Prediction confidence Confident

Genome information
Genome ID	UHGV-0070839
vOTU ID	vOTU-032620
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_105641
BioSample	SAMEA2452123
Country	Australia
Virus prediction confidence	Confident

Quality assessment
CheckV method	HMM-based
CheckV completeness	51.02% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9618
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	41.84
Jumbo phage	No

Genome content
Genome length	34,871 bps
GC content	48.89%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	49
CDS density	93.38%
Average CDS length	665.82 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0070839_1	UniRef90	UniRef90_UPI0003B5564A	ribonucleoside-triphosphate reductase	NA
UHGV-0070839_1	eggNOG-mapper	944480.ATUV01000001_gene645	Anaerobic ribonucleoside-triphosphate reductase	NA
UHGV-0070839_1	Pfam	PF13597	Anaerobic ribonucleoside-triphosphate reductase	NRDD
UHGV-0070839_1	COG	COG1328	Anaerobic ribonucleoside-triphosphate reductase	NA
UHGV-0070839_4	KOfam	K01185	E3.2.1.17; lysozyme [EC:3.2.1.17]	NA
UHGV-0070839_4	PHROG	phrog_7	endolysin	lysis
UHGV-0070839_4	UniRef90	UniRef90_A0A1Y4DMM0	Lysozyme	NA
UHGV-0070839_4	eggNOG-mapper	1117314.PCIT_14771	Phage lysozyme	NA
UHGV-0070839_4	Pfam	PF00959	Phage lysozyme	Phage_lysozyme
UHGV-0070839_4	COG	COG3772	Phage-related lysozyme (muramidase), GH24 family	NA
UHGV-0070839_4	Structural annotation	PF00959, MF_04136, COG3772	NA	NA
UHGV-0070839_10	PHROG	phrog_2854	tail length tape measure protein	tail
UHGV-0070839_10	UniRef90	UniRef90_B2KDA0	Putative chromosome segregation ATPase	NA
UHGV-0070839_10	eggNOG-mapper	1406840.Q763_17230	tape measure	NA
UHGV-0070839_10	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0070839_18	PHROG	phrog_371	major head protein	head and packaging
UHGV-0070839_18	UniRef90	UniRef90_A0A7S6S216	Mu-like prophage major head subunit gpT family protein	NA
UHGV-0070839_18	eggNOG-mapper	1432056.X781_20590	Mu-like prophage major head subunit gpT	NA
UHGV-0070839_18	Pfam	PF10124	Mu-like prophage major head subunit gpT	Mu-like_gpT
UHGV-0070839_18	COG	COG4397	Mu-like prophage major head subunit gpT	NA
UHGV-0070839_18	Structural annotation	PF10124, MF_04119, TIGR04387, COG4397	NA	NA
UHGV-0070839_19	eggNOG-mapper	880072.Desac_1486	NA	NA
UHGV-0070839_19	Structural annotation	PF02924, COG5471	NA	NA
UHGV-0070839_20	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0070839_20	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0070839_20	UniRef90	UniRef90_B2KDB1	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0070839_20	eggNOG-mapper	373903.Hore_14940	Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins	NA
UHGV-0070839_20	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0070839_20	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0070839_20	Structural annotation	PF00574, MF_00444, NF009205, COG0740	NA	NA
UHGV-0070839_21	PHROG	phrog_113	portal protein	head and packaging
UHGV-0070839_21	UniRef90	UniRef90_A0A6M3IT13	Phage_Mu_F domain-containing protein	NA
UHGV-0070839_21	eggNOG-mapper	1121924.ATWH01000012_gene1135	NA	NA
UHGV-0070839_21	Pfam	PF06074	NA	DUF935
UHGV-0070839_21	COG	COG4383	NA	NA
UHGV-0070839_22	PHROG	phrog_5909	terminase large subunit	head and packaging
UHGV-0070839_22	UniRef90	UniRef90_UPI001F1F7D57	terminase family protein	NA
UHGV-0070839_22	eggNOG-mapper	1122222.AXWR01000008_gene2414	Terminase RNaseH-like domain	NA
UHGV-0070839_22	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0070839_22	Pfam	PF17289	Terminase RNaseH-like domain	Terminase_6C
UHGV-0070839_22	COG	COG4373	Mu-like prophage FluMu protein gp28	NA
UHGV-0070839_22	Structural annotation	PF03237, PF17289, MF_04146, TIGR01547, COG4373	NA	NA
UHGV-0070839_23	PHROG	phrog_606	terminase small subunit	head and packaging
UHGV-0070839_23	UniRef90	UniRef90_UPI00195648BB	DNA-packaging protein	NA
UHGV-0070839_23	eggNOG-mapper	397290.C810_05185	DNA-packaging protein gp3	NA
UHGV-0070839_23	Pfam	PF16677	DNA-packaging protein gp3	GP3_package
UHGV-0070839_26	PHROG	phrog_4268	transcriptional repressor	transcription regulation
UHGV-0070839_26	UniRef90	UniRef90_A0A1F9Q6E6	Putative addiction module antidote protein	NA
UHGV-0070839_26	eggNOG-mapper	644282.Deba_2605	addiction module antidote protein	NA
UHGV-0070839_26	Pfam	PF21716	Probable addiction module antidote protein	dnstrm_HI1420
UHGV-0070839_26	NCBIFam	TIGR02684.1	addiction module antidote protein	NA
UHGV-0070839_26	COG	COG3636	NA	NA
UHGV-0070839_27	PHROG	phrog_3445	toxin	moron, auxiliary metabolic gene and host takeover
UHGV-0070839_27	UniRef90	UniRef90_A0A6M0C054	Type II toxin-antitoxin system RelE/ParE family toxin	NA
UHGV-0070839_27	eggNOG-mapper	113355.CM001775_gene181	NA	NA
UHGV-0070839_27	Pfam	PF05973	NA	Gp49
UHGV-0070839_27	NCBIFam	TIGR02683.1	type II toxin-antitoxin system RelE/ParE family toxin	NA
UHGV-0070839_27	COG	COG3657	Putative component of the toxin-antitoxin plasmid stabilization module	NA
UHGV-0070839_27	Structural annotation	PF05973, TIGR02683, COG3657	NA	NA
UHGV-0070839_28	PHROG	phrog_16139	NA	unknown function
UHGV-0070839_28	UniRef90	UniRef90_UPI000F62E45A	nucleoside 2-deoxyribosyltransferase	NA
UHGV-0070839_28	eggNOG-mapper	1230343.CANP01000031_gene2335	nucleoside 2-deoxyribosyltransferase	NA
UHGV-0070839_28	COG	COG3613	Nucleoside 2-deoxyribosyltransferase	NA
UHGV-0070839_30	eggNOG-mapper	1158614.I592_03400	NA	NA
UHGV-0070839_32	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0070839_32	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0070839_32	UniRef90	UniRef90_A0A1Y4DC18	HTH cro/C1-type domain-containing protein	NA
UHGV-0070839_32	eggNOG-mapper	1399941.U3PIS7_9CAUD	sequence-specific DNA binding	NA
UHGV-0070839_32	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0070839_32	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0070839_32	Structural annotation	PF00717, MF_00015, TIGR00498, COG1974	NA	NA
UHGV-0070839_35	KOfam	K03546	sbcC, rad50; DNA repair protein SbcC/Rad50	NA
UHGV-0070839_35	PHROG	phrog_1499	NA	unknown function
UHGV-0070839_35	UniRef90	UniRef90_B2KDD8	AAA_23 domain-containing protein	NA
UHGV-0070839_35	eggNOG-mapper	856793.MICA_589	AAA domain	NA
UHGV-0070839_35	Pfam	PF13476	AAA domain	AAA_23
UHGV-0070839_35	COG	COG0419	DNA repair exonuclease SbcCD ATPase subunit	NA
UHGV-0070839_35	Structural annotation	TIGR00634, COG0497	NA	NA
UHGV-0070839_36	PHROG	phrog_9403	NA	unknown function
UHGV-0070839_37	PHROG	phrog_412	exonuclease VIII	DNA, RNA and nucleotide metabolism
UHGV-0070839_37	UniRef90	UniRef90_B2KDD5	NA	NA
UHGV-0070839_37	Pfam	PF12705	PD-(D/E)XK nuclease superfamily	PDDEXK_1
UHGV-0070839_37	Structural annotation	PF12684, MF_03030, TIGR00372, COG2887	NA	NA
UHGV-0070839_38	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0070839_38	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0070839_38	eggNOG-mapper	1150474.JQJI01000006_gene829	RecT family	NA
UHGV-0070839_38	Pfam	PF03837	RecT family	RecT
UHGV-0070839_38	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0070839_38	Structural annotation	PF03837, NF007351, COG3723	NA	NA
UHGV-0070839_39	PHROG	phrog_824	NA	unknown function
UHGV-0070839_40	PHROG	phrog_270	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0070839_41	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0070839_41	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0070839_41	UniRef90	UniRef90_A0A396A5T9	IstB_IS21 domain-containing protein	NA
UHGV-0070839_41	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-0070839_41	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0070839_41	Structural annotation	PF01695, PF06827, MF_00377, NF005992, COG1484	NA	NA
UHGV-0070839_42	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0070839_42	PHROG	phrog_498	DNA methyltransferase	other
UHGV-0070839_42	UniRef90	UniRef90_A0A431IA37	Methyltransferase	NA
UHGV-0070839_42	eggNOG-mapper	648757.Rvan_1486	Belongs to the N(4) N(6)-methyltransferase family	NA
UHGV-0070839_42	PADLOC	MTase_II_00157	Type II methyltransferase	RM
UHGV-0070839_42	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0070839_42	COG	COG0863	DNA modification methylase	NA
UHGV-0070839_42	Structural annotation	PF01555, MF_01872, NF008572, COG0863	NA	NA
UHGV-0070839_43	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0070839_43	PHROG	phrog_4715	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0070839_43	UniRef90	UniRef90_A0A3B9YJM2	ParB domain-containing protein	NA
UHGV-0070839_43	eggNOG-mapper	1124982.MSI_03740	Belongs to the ParB family	NA
UHGV-0070839_43	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0070839_43	Pfam	PF17762	HTH domain found in ParB protein	HTH_ParB
UHGV-0070839_43	NCBIFam	TIGR00180.1	ParB/RepB/Spo0J family partition protein	NA
UHGV-0070839_43	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0070839_45	PHROG	phrog_98	NA	unknown function
UHGV-0070839_45	UniRef90	UniRef90_A0A1L6RCD8	YopX domain-containing protein	NA
UHGV-0070839_45	eggNOG-mapper	797515.HMPREF9103_02492	YopX protein	NA
UHGV-0070839_45	Pfam	PF09643	YopX protein	YopX
UHGV-0070839_45	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0070839_46	PHROG	phrog_599	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UHGV-0070839_46	UniRef90	UniRef90_UPI001656C702	Lar family restriction alleviation protein	NA
UHGV-0070839_46	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0070839_46	NCBIFam	TIGR03655.1	Lar family restriction alleviation protein	NA
UHGV-0070839_46	Structural annotation	NF007260	NA	NA
UHGV-0070839_47	PHROG	phrog_954	DNA methyltransferase	other
UHGV-0070839_47	UniRef90	UniRef90_UPI000D21390D	SAM-dependent methyltransferase	NA
UHGV-0070839_47	eggNOG-mapper	1497679.EP56_08455	DNA (cytosine-5-)-methyltransferase activity	NA
UHGV-0070839_47	PADLOC	MTase_II_00074	Type II methyltransferase	RM
UHGV-0070839_47	COG	COG0500	SAM-dependent methyltransferase	NA
UHGV-0070839_47	Structural annotation	PF05148, MF_03044, NF033398, COG1041	NA	NA
UHGV-0070839_48	PHROG	phrog_625	NA	unknown function
UHGV-0070839_48	UniRef90	UniRef90_A0A7C3D333	ASCH domain-containing protein	NA
UHGV-0070839_48	COG	COG0476	Molybdopterin or thiamine biosynthesis adenylyltransferase	NA
UHGV-0070839_48	Structural annotation	PF12961, MF_00684, NF003443, COG2411	NA	NA
UHGV-0070839_49	KOfam	K14059	int; integrase	NA
UHGV-0070839_49	PHROG	phrog_1	integrase	integration and excision
UHGV-0070839_49	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0070839_49	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0070839_49	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA