UHGV-0070860

Genome information

Genome length 46,110 bps

CDS count 50

Completeness 70.59% (medium-quality)

geNomad score 0.9753

Prediction confidence Confident

Genome information
Genome ID	UHGV-0070860
vOTU ID	vOTU-029762
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_137675
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	70.59% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	19
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9753
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	51.46
Jumbo phage	No

Genome content
Genome length	46,110 bps
GC content	30.75%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	50
CDS density	92.46%
Average CDS length	854.70 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0070860_1	PHROG	phrog_9079	NA	unknown function
UHGV-0070860_1	eggNOG-mapper	445973.CLOBAR_02450	NA	NA
UHGV-0070860_1	Structural annotation	TIGR04550	NA	NA
UHGV-0070860_2	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0070860_2	PHROG	phrog_2606	terminase small subunit	head and packaging
UHGV-0070860_2	UniRef90	UniRef90_UPI001D16572B	terminase small subunit	NA
UHGV-0070860_2	eggNOG-mapper	642492.Clole_2766	Terminase Small Subunit	NA
UHGV-0070860_2	Pfam	PF10668	Phage terminase small subunit	Phage_terminase
UHGV-0070860_2	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0070860_2	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0070860_2	Structural annotation	PF03592, PF10668, NF040601, COG3728	NA	NA
UHGV-0070860_3	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0070860_3	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0070860_3	UniRef90	UniRef90_UPI001E406D12	PBSX family phage terminase large subunit	NA
UHGV-0070860_3	eggNOG-mapper	642492.Clole_2765	Phage terminase, large subunit, PBSX family	NA
UHGV-0070860_3	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0070860_3	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0070860_3	COG	COG1783	Phage terminase large subunit	NA
UHGV-0070860_3	Structural annotation	PF04466, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0070860_4	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0070860_4	PHROG	phrog_10250	NA	unknown function
UHGV-0070860_4	UniRef90	UniRef90_R9JRU0	PBSX family phage terminase, large subunit	NA
UHGV-0070860_4	eggNOG-mapper	59241.E7DNA1_BPDP1	Terminase-like family	NA
UHGV-0070860_4	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0070860_4	Structural annotation	PF20441, MF_04145, TIGR01547, COG5323	NA	NA
UHGV-0070860_5	PHROG	phrog_64	portal protein	head and packaging
UHGV-0070860_5	UniRef90	UniRef90_UPI001E369C6C	phage portal protein	NA
UHGV-0070860_5	eggNOG-mapper	59241.E7DNA2_BPDP1	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0070860_5	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0070860_5	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0070860_6	PHROG	phrog_1315	NA	unknown function
UHGV-0070860_6	eggNOG-mapper	1121342.AUCO01000012_gene1698	NA	NA
UHGV-0070860_6	Structural annotation	TIGR00310	NA	NA
UHGV-0070860_7	PHROG	phrog_1657	head morphogenesis	head and packaging
UHGV-0070860_7	UniRef90	UniRef90_UPI001E457CFA	phage head morphogenesis protein	NA
UHGV-0070860_7	eggNOG-mapper	59241.E7DNA4_BPDP1	Phage Mu protein F like protein	NA
UHGV-0070860_7	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0070860_7	Structural annotation	PF06152, TIGR01641	NA	NA
UHGV-0070860_8	PHROG	phrog_2657	transcriptional regulator	transcription regulation
UHGV-0070860_8	UniRef90	UniRef90_A0A0V8QIT3	Rha family transcriptional regulator	NA
UHGV-0070860_8	eggNOG-mapper	411490.ANACAC_00702	phage regulatory protein, rha family	NA
UHGV-0070860_8	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-0070860_8	NCBIFam	TIGR02681.1	phage regulatory protein, Rha family	NA
UHGV-0070860_8	COG	COG3646	Phage regulatory protein Rha	NA
UHGV-0070860_8	Structural annotation	PF09669, TIGR02681, COG3646	NA	NA
UHGV-0070860_9	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0070860_9	UniRef90	UniRef90_UPI001E38E233	phage scaffolding protein	NA
UHGV-0070860_9	eggNOG-mapper	1122947.FR7_2527	Phage minor structural protein GP20	NA
UHGV-0070860_9	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0070860_9	Structural annotation	PF06810	NA	NA
UHGV-0070860_10	PHROG	phrog_909	major head protein	head and packaging
UHGV-0070860_10	Structural annotation	PF02924	NA	NA
UHGV-0070860_11	PHROG	phrog_29	major head protein	head and packaging
UHGV-0070860_11	UniRef90	UniRef90_UPI001D166481	major capsid protein	NA
UHGV-0070860_11	eggNOG-mapper	59241.E7DNA7_BPDP1	Phage major capsid protein E	NA
UHGV-0070860_11	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-0070860_11	Structural annotation	PF03864, MF_04133, NF041162, COG4653	NA	NA
UHGV-0070860_12	PHROG	phrog_4020	NA	unknown function
UHGV-0070860_12	eggNOG-mapper	1443122.Z958_05850	NA	NA
UHGV-0070860_13	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0070860_14	eggNOG-mapper	580331.Thit_1383	NA	NA
UHGV-0070860_14	Structural annotation	PF04883, TIGR01725	NA	NA
UHGV-0070860_15	Structural annotation	PF05657	NA	NA
UHGV-0070860_16	PHROG	phrog_6686	tail tube protein	tail
UHGV-0070860_16	UniRef90	UniRef90_E7DNB3	Structural protein	NA
UHGV-0070860_16	eggNOG-mapper	59241.E7DNB3_BPDP1	NA	NA
UHGV-0070860_16	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-0070860_17	PHROG	phrog_6280	NA	unknown function
UHGV-0070860_17	UniRef90	UniRef90_A0A6B4JHR7	Esterase	NA
UHGV-0070860_17	eggNOG-mapper	536233.CLO_0548	NA	NA
UHGV-0070860_18	PHROG	phrog_6541	NA	unknown function
UHGV-0070860_19	PHROG	phrog_1533	tail length tape measure protein	tail
UHGV-0070860_19	UniRef90	UniRef90_A0A1G9TYM9	Phage tail tape measure protein, TP901 family, core region	NA
UHGV-0070860_19	eggNOG-mapper	411473.RUMCAL_03183	Phage tail tape measure protein, TP901 family	NA
UHGV-0070860_19	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0070860_19	COG	COG5283	Phage-related tail protein	NA
UHGV-0070860_20	PHROG	phrog_1035	endonuclease VII	DNA, RNA and nucleotide metabolism
UHGV-0070860_20	UniRef90	UniRef90_UPI001D10E5C7	HNH endonuclease	NA
UHGV-0070860_20	eggNOG-mapper	1462526.BN990_01843	endonuclease activity	NA
UHGV-0070860_20	Pfam	PF14279	HNH endonuclease	HNH_5
UHGV-0070860_20	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0070860_20	Structural annotation	PF01844, COG1403	NA	NA
UHGV-0070860_21	PHROG	phrog_1533	tail length tape measure protein	tail
UHGV-0070860_21	UniRef90	UniRef90_UPI001E29D389	phage tail tape measure protein	NA
UHGV-0070860_21	eggNOG-mapper	1235794.C811_01380	Phage-related minor tail protein	NA
UHGV-0070860_21	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0070860_21	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0070860_21	COG	COG5283	Phage-related tail protein	NA
UHGV-0070860_21	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0070860_22	PHROG	phrog_202	distal tail protein Dit	tail
UHGV-0070860_22	UniRef90	UniRef90_A0A1I3MEI4	Putative phage tail component, N-terminal domain-containing protein	NA
UHGV-0070860_22	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0070860_22	Pfam	PF08239	Bacterial SH3 domain	SH3_3
UHGV-0070860_22	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-0070860_22	COG	COG1876	LD-carboxypeptidase LdcB, LAS superfamily	NA
UHGV-0070860_22	Structural annotation	PF05709, PF18342, TIGR01633, NF040670, COG4722, COG4991	NA	NA
UHGV-0070860_23	PHROG	phrog_12312	virion structural protein	head and packaging
UHGV-0070860_23	UniRef90	UniRef90_UPI001D1653FC	phage tail protein	NA
UHGV-0070860_23	eggNOG-mapper	1329516.JPST01000005_gene1273	Prophage endopeptidase tail	NA
UHGV-0070860_23	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0070860_23	Pfam	PF01464	Transglycosylase SLT domain	SLT
UHGV-0070860_23	COG	COG4926	Phage-related protein	NA
UHGV-0070860_23	Structural annotation	PF14594, PF08239, PF05382, TIGR01665, NF041850, NF033742, COG4926, COG4991, COG0791	NA	NA
UHGV-0070860_24	PHROG	phrog_16267	NA	unknown function
UHGV-0070860_24	eggNOG-mapper	411459.RUMOBE_00923	NA	NA
UHGV-0070860_24	COG	COG4926	Phage-related protein	NA
UHGV-0070860_25	KOfam	K16559	exoK; endo-1,3-1,4-beta-glycanase ExoK [EC:3.2.1.-]	NA
UHGV-0070860_25	UniRef90	UniRef90_A2E916	Glycosyl hydrolases family 16 protein	NA
UHGV-0070860_25	eggNOG-mapper	349741.Amuc_0875	Glycosyl hydrolases family 16	NA
UHGV-0070860_25	Pfam	PF00722	Glycosyl hydrolases family 16	Glyco_hydro_16
UHGV-0070860_25	COG	COG2273	Beta-glucanase, GH16 family	NA
UHGV-0070860_25	Structural annotation	PF03935, PF19077, PF18998, PF15432, NF041449, NF033814, NF033675, COG2273, COG2372	NA	NA
UHGV-0070860_26	Structural annotation	PF13157, PF13229, NF033679	NA	NA
UHGV-0070860_28	UniRef90	UniRef90_UPI001E36F708	metallophosphoesterase	NA
UHGV-0070860_28	Pfam	PF00149	Calcineurin-like phosphoesterase	Metallophos
UHGV-0070860_29	UniRef90	UniRef90_A0A542AKB6	Anaerobic ribonucleoside-triphosphate reductase-like protein	NA
UHGV-0070860_29	eggNOG-mapper	1121334.KB911070_gene1258	Anaerobic ribonucleoside-triphosphate reductase	NA
UHGV-0070860_29	Pfam	PF13597	Anaerobic ribonucleoside-triphosphate reductase	NRDD
UHGV-0070860_29	COG	COG1328	Anaerobic ribonucleoside-triphosphate reductase	NA
UHGV-0070860_30	PHROG	phrog_1863	NA	unknown function
UHGV-0070860_30	eggNOG-mapper	1226322.HMPREF1545_04027	NA	NA
UHGV-0070860_31	PHROG	phrog_1129	holin	lysis
UHGV-0070860_31	UniRef90	UniRef90_A0A8I1VCW0	Phage holin family protein	NA
UHGV-0070860_31	eggNOG-mapper	1391647.AVSV01000036_gene884	Phage holin family Hol44, in holin superfamily V	NA
UHGV-0070860_31	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0070860_31	Structural annotation	PF06946	NA	NA
UHGV-0070860_32	UniRef90	UniRef90_UPI0018AA2066	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0070860_32	eggNOG-mapper	441769.ABFU01000059_gene378	sh3 domain protein	NA
UHGV-0070860_32	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0070860_32	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0070860_32	Structural annotation	PF01510, PF13457, MF_04111, NF008758, NF033202, COG4991, COG3023	NA	NA
UHGV-0070860_36	PHROG	phrog_314	homing endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0070860_36	UniRef90	UniRef90_UPI000412123C	GIY-YIG nuclease family protein	NA
UHGV-0070860_36	eggNOG-mapper	476272.RUMHYD_01755	GIY-YIG type nucleases (URI domain)	NA
UHGV-0070860_36	COG	COG3860	NA	NA
UHGV-0070860_36	Structural annotation	TIGR01453	NA	NA
UHGV-0070860_37	PHROG	phrog_1760	anti-termination protein	transcription regulation
UHGV-0070860_37	UniRef90	UniRef90_A0A8F1W4U6	Rha family transcriptional regulator	NA
UHGV-0070860_37	eggNOG-mapper	1122147.AUEH01000021_gene610	SOS response	NA
UHGV-0070860_37	Pfam	PF10543	ORF6N domain	ORF6N
UHGV-0070860_37	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0070860_37	COG	COG3645	Phage antirepressor protein YoqD, KilAC domain	NA
UHGV-0070860_37	Structural annotation	PF03374, PF10543, TIGR02681, COG3645	NA	NA
UHGV-0070860_44	PHROG	phrog_5156	NA	unknown function
UHGV-0070860_44	UniRef90	UniRef90_A0A1C5W2M7	AAA-like domain	NA
UHGV-0070860_44	eggNOG-mapper	536233.CLO_1881	COG0433 Predicted ATPase	NA
UHGV-0070860_44	COG	COG0433	Archaeal DNA helicase HerA or a related bacterial ATPase, contains HAS-barrel and ATPase domains	NA
UHGV-0070860_44	Structural annotation	PF02534, NF041017, COG3451	NA	NA
UHGV-0070860_45	PHROG	phrog_6775	NA	unknown function
UHGV-0070860_46	PHROG	phrog_27252	NA	unknown function
UHGV-0070860_46	Pfam	PF20038	Helix-turn-helix domain	HTH_59
UHGV-0070860_47	PHROG	phrog_2302	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0070860_47	UniRef90	UniRef90_A0A150FQY9	PAPS_reduct domain-containing protein	NA
UHGV-0070860_47	eggNOG-mapper	411468.CLOSCI_00266	NA	NA
UHGV-0070860_47	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0070860_47	Pfam	PF11922	NA	DUF3440
UHGV-0070860_47	COG	COG3969	NA	NA
UHGV-0070860_47	Structural annotation	PF11922, PF01507, MF_00063, NF006327, COG3969	NA	NA
UHGV-0070860_48	PHROG	phrog_2159	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0070860_48	UniRef90	UniRef90_U1WF72	Putative immunoglobulin-binding regulator B	NA
UHGV-0070860_48	eggNOG-mapper	649747.HMPREF0083_04675	ParB-like nuclease domain	NA
UHGV-0070860_48	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0070860_48	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0070860_48	Structural annotation	PF02195, PF18579, MF_02015, TIGR04285, COG1475	NA	NA
UHGV-0070860_50	KOfam	K14440	SMARCAL1, HARP; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:5.6.2.-]	NA
UHGV-0070860_50	PHROG	phrog_62	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0070860_50	UniRef90	UniRef90_A0A3D1WKX4	ATP-dependent helicase (Fragment)	NA
UHGV-0070860_50	eggNOG-mapper	1151292.QEW_4405	SNF2 family N-terminal domain	NA
UHGV-0070860_50	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-0070860_50	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-0070860_50	Structural annotation	PF04851, MF_00967, NF002340, COG1702	NA	NA