UHGV-0070890

Genome information

Genome length 34,043 bps

CDS count 61

Completeness 96.61% (high-quality)

geNomad score 0.9766

Prediction confidence Confident

Genome information
Genome ID	UHGV-0070890
vOTU ID	vOTU-012264
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_114793
BioSample	NA
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	96.61% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9766
Virus hallmark genes (geNomad)	14
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	41.5
Jumbo phage	No

Genome content
Genome length	34,043 bps
GC content	43.16%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	61
CDS density	89.52%
Average CDS length	504.69 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0070890_1	KOfam	K06306	yaaH; spore germination protein	NA
UHGV-0070890_1	UniRef90	UniRef90_A0A4V0Z6X9	Spore germination protein YaaH	NA
UHGV-0070890_1	eggNOG-mapper	33035.JPJF01000013_gene4725	Glycosyl hydrolases family 18	NA
UHGV-0070890_1	Pfam	PF01476	LysM domain	LysM
UHGV-0070890_1	COG	COG1388	LysM repeat	NA
UHGV-0070890_5	UniRef90	UniRef90_A0A6N7SLT5	Helix-turn-helix domain-containing protein	NA
UHGV-0070890_5	eggNOG-mapper	1235799.C818_04243	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0070890_5	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0070890_5	Structural annotation	PF13443, NF000090, COG3655	NA	NA
UHGV-0070890_8	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0070890_8	PHROG	phrog_435	endolysin	lysis
UHGV-0070890_8	UniRef90	UniRef90_A0A8G1TJN7	MurNAc-LAA domain-containing protein	NA
UHGV-0070890_8	eggNOG-mapper	33035.JPJF01000090_gene96	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	NA
UHGV-0070890_8	Pfam	PF01832	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	Glucosaminidase
UHGV-0070890_8	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0070890_8	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0070890_8	Pfam	PF19127	Choline-binding repeat	Choline_bind_3
UHGV-0070890_8	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0070890_9	PHROG	phrog_1129	holin	lysis
UHGV-0070890_9	UniRef90	UniRef90_A0A8G1TPT2	Holin	NA
UHGV-0070890_9	eggNOG-mapper	33035.JPJF01000090_gene95	Phage holin family Hol44, in holin superfamily V	NA
UHGV-0070890_9	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0070890_9	Structural annotation	PF06946	NA	NA
UHGV-0070890_10	eggNOG-mapper	33035.JPJF01000090_gene94	NA	NA
UHGV-0070890_11	COG	COG4675	Phage tail collar domain	NA
UHGV-0070890_13	eggNOG-mapper	476272.RUMHYD_02869	NA	NA
UHGV-0070890_13	Structural annotation	PF07703, NF038114, COG5501	NA	NA
UHGV-0070890_14	KOfam	K13276	bpr; bacillopeptidase F [EC:3.4.21.-]	NA
UHGV-0070890_14	PHROG	phrog_11157	NA	unknown function
UHGV-0070890_14	UniRef90	UniRef90_A0A7G5N108	Big_13 domain-containing protein	NA
UHGV-0070890_14	eggNOG-mapper	33035.JPJF01000023_gene3227	NA	NA
UHGV-0070890_14	Pfam	PF19077	Bacterial Ig-like domain	Big_13
UHGV-0070890_14	Pfam	PF09136	Glucodextranase, domain B	Glucodextran_B
UHGV-0070890_14	NCBIFam	NF033510.3	Ca2+-stabilized repeat-containing adhesin	NA
UHGV-0070890_14	COG	COG3292	Periplasmic ligand-binding sensor domain	NA
UHGV-0070890_14	Structural annotation	PF09136, PF13205, PF13754, MF_04116, NF032891, COG2372, COG5456	NA	NA
UHGV-0070890_15	PHROG	phrog_19280	NA	unknown function
UHGV-0070890_15	eggNOG-mapper	33035.JPJF01000023_gene3228	NA	NA
UHGV-0070890_15	Structural annotation	PF10651, TIGR02781	NA	NA
UHGV-0070890_16	KOfam	K21471	cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-]	NA
UHGV-0070890_16	PHROG	phrog_11037	NA	unknown function
UHGV-0070890_16	UniRef90	UniRef90_A0A7G5N110	Peptidase M23	NA
UHGV-0070890_16	eggNOG-mapper	33035.JPJF01000023_gene3229	NA	NA
UHGV-0070890_16	Pfam	PF18013	Phage tail lysozyme	Phage_lysozyme2
UHGV-0070890_16	Pfam	PF00877	NlpC/P60 family	NLPC_P60
UHGV-0070890_16	Structural annotation	PF18013, PF05382, NF033742, COG0791	NA	NA
UHGV-0070890_17	PHROG	phrog_13289	tail protein	tail
UHGV-0070890_17	UniRef90	UniRef90_A0A8G1TKQ2	Prophage_tail domain-containing protein	NA
UHGV-0070890_17	eggNOG-mapper	33035.JPJF01000023_gene3230	Phage minor structural protein	NA
UHGV-0070890_17	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0070890_17	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0070890_17	COG	COG4926	Phage-related protein	NA
UHGV-0070890_17	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0070890_18	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0070890_18	UniRef90	UniRef90_UPI00164B9B8B	phage tail family protein	NA
UHGV-0070890_18	eggNOG-mapper	33035.JPJF01000023_gene3231	phage tail	NA
UHGV-0070890_18	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-0070890_18	COG	COG4722	Phage-related protein YomH	NA
UHGV-0070890_18	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0070890_19	PHROG	phrog_23464	NA	unknown function
UHGV-0070890_19	UniRef90	UniRef90_A0A1Y4R6K5	PhageMin_Tail domain-containing protein	NA
UHGV-0070890_19	eggNOG-mapper	33035.JPJF01000023_gene3232	phage tail tape measure protein	NA
UHGV-0070890_19	COG	COG5412	Phage-related protein	NA
UHGV-0070890_19	Structural annotation	PF20155	NA	NA
UHGV-0070890_21	eggNOG-mapper	33035.JPJF01000039_gene279	NA	NA
UHGV-0070890_21	Structural annotation	PF11836	NA	NA
UHGV-0070890_22	PHROG	phrog_88	major tail protein	tail
UHGV-0070890_22	UniRef90	UniRef90_A0A8G1TSY7	Phage tail protein	NA
UHGV-0070890_22	eggNOG-mapper	33035.JPJF01000039_gene278	NA	NA
UHGV-0070890_22	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0070890_22	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0070890_23	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0070890_23	UniRef90	UniRef90_R6UNR2	HK97 gp10 family phage protein	NA
UHGV-0070890_23	eggNOG-mapper	33035.JPJF01000039_gene277	NA	NA
UHGV-0070890_23	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0070890_23	Structural annotation	TIGR01725	NA	NA
UHGV-0070890_24	PHROG	phrog_78	tail terminator	connector
UHGV-0070890_24	eggNOG-mapper	33035.JPJF01000039_gene276	NA	NA
UHGV-0070890_24	Structural annotation	PF05657	NA	NA
UHGV-0070890_25	PHROG	phrog_19734	NA	unknown function
UHGV-0070890_25	UniRef90	UniRef90_A0A8G1TQJ2	Head-tail adaptor protein	NA
UHGV-0070890_25	eggNOG-mapper	33035.JPJF01000039_gene275	NA	NA
UHGV-0070890_25	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0070890_26	PHROG	phrog_2550	NA	unknown function
UHGV-0070890_26	UniRef90	UniRef90_R5V091	Phage related protein	NA
UHGV-0070890_26	eggNOG-mapper	33035.JPJF01000039_gene274	NA	NA
UHGV-0070890_26	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0070890_27	PHROG	phrog_10	major head protein	head and packaging
UHGV-0070890_27	UniRef90	UniRef90_A0A8G1TPP5	Phage major capsid protein	NA
UHGV-0070890_27	eggNOG-mapper	33035.JPJF01000039_gene273	phage major capsid protein, HK97 family	NA
UHGV-0070890_27	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0070890_27	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0070890_27	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0070890_27	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0070890_28	KOfam	K06904	NA	NA
UHGV-0070890_28	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0070890_28	UniRef90	UniRef90_A0A8G1TPN9	HK97 family phage prohead protease	NA
UHGV-0070890_28	eggNOG-mapper	33035.JPJF01000039_gene272	Caudovirus prohead serine protease	NA
UHGV-0070890_28	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0070890_28	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0070890_28	COG	COG3740	Phage head maturation protease	NA
UHGV-0070890_28	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0070890_29	PHROG	phrog_12	portal protein	head and packaging
UHGV-0070890_29	UniRef90	UniRef90_A0A8G1TPJ1	Phage portal protein	NA
UHGV-0070890_29	eggNOG-mapper	33035.JPJF01000039_gene271	Phage portal protein, HK97 family	NA
UHGV-0070890_29	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0070890_29	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0070890_29	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0070890_29	Structural annotation	PF04860, MF_04120, TIGR01537, COG4695	NA	NA
UHGV-0070890_30	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0070890_30	UniRef90	UniRef90_A0A8G1TPU8	Terminase large subunit	NA
UHGV-0070890_30	eggNOG-mapper	33035.JPJF01000113_gene2096	NA	NA
UHGV-0070890_30	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0070890_30	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0070890_30	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0070890_30	Structural annotation	PF20441, PF03354, MF_04013, TIGR01547, COG4626	NA	NA
UHGV-0070890_31	PHROG	phrog_361	terminase small subunit	head and packaging
UHGV-0070890_31	UniRef90	UniRef90_UPI000ABD3B6D	P27 family phage terminase small subunit	NA
UHGV-0070890_31	eggNOG-mapper	33035.JPJF01000113_gene2097	Phage terminase, small subunit	NA
UHGV-0070890_31	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0070890_31	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0070890_33	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0070890_33	UniRef90	UniRef90_A0A414B846	HNH endonuclease	NA
UHGV-0070890_33	eggNOG-mapper	33035.JPJF01000113_gene2099	HNH nucleases	NA
UHGV-0070890_33	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0070890_33	Structural annotation	TIGR02646	NA	NA
UHGV-0070890_34	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0070890_34	UniRef90	UniRef90_A0A3D3U8Q6	Sigma70_r4 domain-containing protein	NA
UHGV-0070890_34	eggNOG-mapper	1256908.HMPREF0373_00671	NA	NA
UHGV-0070890_34	Structural annotation	PF04545, MF_00245, TIGR01636, COG2739	NA	NA
UHGV-0070890_36	PHROG	phrog_10714	NA	unknown function
UHGV-0070890_36	UniRef90	UniRef90_A0A8G1TG84	Restriction alleviation protein, Lar family	NA
UHGV-0070890_36	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0070890_36	NCBIFam	TIGR03655.1	Lar family restriction alleviation protein	NA
UHGV-0070890_36	dbAPIS	APIS033	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	NA
UHGV-0070890_38	PHROG	phrog_37916	NA	unknown function
UHGV-0070890_42	PHROG	phrog_9298	radical SAM domain protein	other
UHGV-0070890_42	UniRef90	UniRef90_UPI001D05D528	radical SAM protein	NA
UHGV-0070890_42	eggNOG-mapper	1235793.C809_02647	NA	NA
UHGV-0070890_42	COG	COG1032	Radical SAM superfamily enzyme YgiQ, UPF0313 family	NA
UHGV-0070890_42	Structural annotation	MF_01864, NF010916, COG2516	NA	NA
UHGV-0070890_43	eggNOG-mapper	445972.ANACOL_00166	NA	NA
UHGV-0070890_44	UniRef90	UniRef90_A0A8G1TFU2	NA	NA
UHGV-0070890_44	eggNOG-mapper	1232453.BAIF02000057_gene1153	NA	NA
UHGV-0070890_44	Pfam	PF04448	NA	DUF551
UHGV-0070890_44	Structural annotation	NF037951	NA	NA
UHGV-0070890_46	UniRef90	UniRef90_A4XKQ3	Ribonuclease H	NA
UHGV-0070890_46	eggNOG-mapper	351627.Csac_1903	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids	NA
UHGV-0070890_46	COG	COG0328	Ribonuclease HI	NA
UHGV-0070890_46	Structural annotation	PF00075, MF_00042, NF001236, COG0328	NA	NA
UHGV-0070890_47	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0070890_47	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0070890_47	UniRef90	UniRef90_A0A8G1WUX4	Single-stranded DNA-binding protein	NA
UHGV-0070890_47	eggNOG-mapper	537007.BLAHAN_04317	NA	NA
UHGV-0070890_47	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0070890_47	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0070890_47	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0070890_47	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0070890_48	UniRef90	UniRef90_A0A7G5N137	Response regulator transcription factor	NA
UHGV-0070890_49	PHROG	phrog_7566	NA	unknown function
UHGV-0070890_49	eggNOG-mapper	97139.C824_00037	NA	NA
UHGV-0070890_51	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0070890_51	UniRef90	UniRef90_UPI001D0EB55A	helitron helicase-like domain-containing protein	NA
UHGV-0070890_51	eggNOG-mapper	483218.BACPEC_01173	NA	NA
UHGV-0070890_51	Structural annotation	PF21578, NF041486	NA	NA
UHGV-0070890_53	PHROG	phrog_34638	NA	unknown function
UHGV-0070890_55	Structural annotation	PF11280	NA	NA
UHGV-0070890_58	PHROG	phrog_750	NA	unknown function
UHGV-0070890_58	eggNOG-mapper	1158614.I592_00583	NA	NA
UHGV-0070890_58	Structural annotation	PF13835, NF040858	NA	NA
UHGV-0070890_59	PHROG	phrog_643	transcriptional regulator	transcription regulation
UHGV-0070890_59	UniRef90	UniRef90_A0A8E3SKS6	NA	NA
UHGV-0070890_59	eggNOG-mapper	226185.EF_2851	NA	NA
UHGV-0070890_59	Pfam	PF11195	NA	DUF2829
UHGV-0070890_59	Structural annotation	PF11195	NA	NA
UHGV-0070890_60	UniRef90	UniRef90_A0A174QJI6	XRE family transcriptional regulator	NA
UHGV-0070890_60	eggNOG-mapper	478749.BRYFOR_07571	NA	NA
UHGV-0070890_60	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0070890_61	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0070890_61	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0070890_61	UniRef90	UniRef90_A0A8G1TFV9	Helix-turn-helix domain-containing protein	NA
UHGV-0070890_61	eggNOG-mapper	478749.BRYFOR_07570	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	NA
UHGV-0070890_61	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0070890_61	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0070890_61	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0070890_61	Structural annotation	PF00717, PF01381, MF_00015, TIGR00498, COG1974	NA	NA