UHGV-0070936

Genome information

Genome length 33,812 bps

CDS count 51

Completeness 88.79% (medium-quality)

geNomad score 0.9648

Prediction confidence Confident

Genome information
Genome ID	UHGV-0070936
vOTU ID	vOTU-034409
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_112097
BioSample	SAMEA2580097
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	88.79% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	28
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9648
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	64.01
Jumbo phage	No

Genome content
Genome length	33,812 bps
GC content	32.77%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	51
CDS density	91.30%
Average CDS length	607.71 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0070936_1	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0070936_1	PHROG	phrog_670	endolysin	lysis
UHGV-0070936_1	UniRef90	UniRef90_A0A2T3FZ87	N-acetylmuramoyl-L-alanine amidase domain-containing protein	NA
UHGV-0070936_1	eggNOG-mapper	1226322.HMPREF1545_00070	Ami_2	NA
UHGV-0070936_1	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0070936_1	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0070936_1	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-0070936_1	Structural annotation	PF01510, PF01471, MF_04111, NF008758, COG5632, COG3409	NA	NA
UHGV-0070936_2	PHROG	phrog_918	NA	unknown function
UHGV-0070936_2	UniRef90	UniRef90_UPI000E468F85	NA	NA
UHGV-0070936_2	eggNOG-mapper	1504823.CCMM01000008_gene1021	NA	NA
UHGV-0070936_2	Pfam	PF19791	NA	DUF6275
UHGV-0070936_2	Structural annotation	PF19791	NA	NA
UHGV-0070936_3	PHROG	phrog_4105	NA	unknown function
UHGV-0070936_3	eggNOG-mapper	411459.RUMOBE_00911	NA	NA
UHGV-0070936_4	PHROG	phrog_1129	holin	lysis
UHGV-0070936_4	UniRef90	UniRef90_A0A0J8Z1S7	Holin protein	NA
UHGV-0070936_4	eggNOG-mapper	1123075.AUDP01000020_gene1532	Phage holin family Hol44, in holin superfamily V	NA
UHGV-0070936_4	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0070936_4	Structural annotation	PF06946	NA	NA
UHGV-0070936_7	eggNOG-mapper	1298920.KI911353_gene4838	NA	NA
UHGV-0070936_8	PHROG	phrog_13879	NA	unknown function
UHGV-0070936_8	eggNOG-mapper	1235800.C819_00474	NA	NA
UHGV-0070936_8	Structural annotation	PF03256, PF16466, PF13550, MF_00813, NF033848, COG3500	NA	NA
UHGV-0070936_9	PHROG	phrog_1194	NA	unknown function
UHGV-0070936_9	eggNOG-mapper	742740.HMPREF9474_03515	NA	NA
UHGV-0070936_9	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0070936_10	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0070936_10	UniRef90	UniRef90_A0A1C5TVU6	Phage-related minor tail protein	NA
UHGV-0070936_10	eggNOG-mapper	1504823.CCMM01000008_gene1032	phage tail tape measure protein	NA
UHGV-0070936_10	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0070936_10	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0070936_11	PHROG	phrog_2066	NA	unknown function
UHGV-0070936_11	eggNOG-mapper	1211844.CBLM010000016_gene1483	NA	NA
UHGV-0070936_12	PHROG	phrog_183	tail chaperone protein	tail
UHGV-0070936_12	UniRef90	UniRef90_UPI000487273D	NA	NA
UHGV-0070936_12	eggNOG-mapper	1504823.CCMM01000008_gene1034	NA	NA
UHGV-0070936_12	Pfam	PF19591	NA	DUF6096
UHGV-0070936_12	Structural annotation	PF19591	NA	NA
UHGV-0070936_13	PHROG	phrog_158	major tail protein	tail
UHGV-0070936_13	UniRef90	UniRef90_UPI00047F0744	tail protein	NA
UHGV-0070936_13	eggNOG-mapper	1211844.CBLM010000016_gene1485	Phage tail tube protein, TTP	NA
UHGV-0070936_13	Pfam	PF08813	Phage tail tube protein, TTP	Phage_tail_3
UHGV-0070936_13	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-0070936_14	PHROG	phrog_78	tail terminator	connector
UHGV-0070936_14	eggNOG-mapper	1504823.CCMM01000008_gene1036	NA	NA
UHGV-0070936_14	Structural annotation	PF05657	NA	NA
UHGV-0070936_15	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0070936_15	UniRef90	UniRef90_A0A1C5TAB0	Phage protein, HK97 gp10 family	NA
UHGV-0070936_15	eggNOG-mapper	1504823.CCMM01000008_gene1037	NA	NA
UHGV-0070936_15	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0070936_15	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0070936_15	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0070936_16	PHROG	phrog_2168	NA	unknown function
UHGV-0070936_16	eggNOG-mapper	1211844.CBLM010000016_gene1488	NA	NA
UHGV-0070936_16	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0070936_17	PHROG	phrog_132	head-tail adaptor	connector
UHGV-0070936_17	UniRef90	UniRef90_A0A1C6BLH2	Phage gp6-like head-tail connector protein	NA
UHGV-0070936_17	eggNOG-mapper	1504823.CCMM01000008_gene1039	NA	NA
UHGV-0070936_17	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0070936_17	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0070936_18	PHROG	phrog_2724	NA	unknown function
UHGV-0070936_18	UniRef90	UniRef90_A0A1C5TV19	Transcription termination factor Rho	NA
UHGV-0070936_18	Pfam	PF07498	Rho termination factor, N-terminal domain	Rho_N
UHGV-0070936_18	Structural annotation	PF07498	NA	NA
UHGV-0070936_19	PHROG	phrog_422	major head protein	head and packaging
UHGV-0070936_19	UniRef90	UniRef90_A0A2H4JCM6	Putative capsid protein	NA
UHGV-0070936_19	eggNOG-mapper	742733.HMPREF9469_01823	NA	NA
UHGV-0070936_19	Structural annotation	PF21703, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0070936_20	PHROG	phrog_172	head scaffolding protein	head and packaging
UHGV-0070936_20	UniRef90	UniRef90_UPI000E403C16	NA	NA
UHGV-0070936_20	eggNOG-mapper	1211844.CBLM010000016_gene1492	NA	NA
UHGV-0070936_20	Pfam	PF14265	NA	DUF4355
UHGV-0070936_20	Structural annotation	PF14265	NA	NA
UHGV-0070936_22	PHROG	phrog_30609	NA	unknown function
UHGV-0070936_22	Structural annotation	PF21485	NA	NA
UHGV-0070936_23	PHROG	phrog_1374	NA	unknown function
UHGV-0070936_24	PHROG	phrog_35328	NA	unknown function
UHGV-0070936_25	PHROG	phrog_115	minor head protein	head and packaging
UHGV-0070936_25	UniRef90	UniRef90_A0A1C5T9G1	NAD(+)--arginine ADP-ribosyltransferase EFV	NA
UHGV-0070936_25	eggNOG-mapper	1504823.CCMM01000008_gene1046	cell adhesion	NA
UHGV-0070936_25	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0070936_25	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0070936_25	COG	COG2369	NA	NA
UHGV-0070936_25	Structural annotation	PF15542, PF04233, TIGR01641, COG2369	NA	NA
UHGV-0070936_26	PHROG	phrog_64	portal protein	head and packaging
UHGV-0070936_26	UniRef90	UniRef90_A0A417IN69	Phage portal protein	NA
UHGV-0070936_26	eggNOG-mapper	1504823.CCMM01000008_gene1047	Phage portal protein, SPP1 family	NA
UHGV-0070936_26	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0070936_26	NCBIFam	TIGR01538.1	phage portal protein	NA
UHGV-0070936_26	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0070936_27	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0070936_27	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0070936_27	UniRef90	UniRef90_A0A417IN81	PBSX family phage terminase large subunit	NA
UHGV-0070936_27	eggNOG-mapper	1504823.CCMM01000008_gene1048	DNA packaging	NA
UHGV-0070936_27	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0070936_27	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0070936_27	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0070936_27	COG	COG1783	Phage terminase large subunit	NA
UHGV-0070936_27	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0070936_28	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0070936_28	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0070936_28	UniRef90	UniRef90_A0A417IN41	Terminase small subunit	NA
UHGV-0070936_28	eggNOG-mapper	1504823.CCMM01000008_gene1049	DNA packaging	NA
UHGV-0070936_28	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0070936_28	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0070936_28	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0070936_30	eggNOG-mapper	926561.KB900623_gene725	NA	NA
UHGV-0070936_30	Structural annotation	PF20505, MF_00194, NF001463, COG2974	NA	NA
UHGV-0070936_33	Structural annotation	PF01104, NF041014	NA	NA
UHGV-0070936_35	PHROG	phrog_59	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0070936_35	UniRef90	UniRef90_A0A1C5T8U3	HNHc domain-containing protein	NA
UHGV-0070936_35	eggNOG-mapper	999413.HMPREF1094_04725	NA	NA
UHGV-0070936_35	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-0070936_35	Structural annotation	PF13392, PF07453	NA	NA
UHGV-0070936_37	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0070936_37	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0070936_37	UniRef90	UniRef90_A0A2T3FZC6	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0070936_37	eggNOG-mapper	552396.HMPREF0863_02433	Endodeoxyribonuclease RusA	NA
UHGV-0070936_37	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0070936_37	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0070936_37	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0070936_38	KOfam	K07505	repA; regulatory protein RepA	NA
UHGV-0070936_38	PHROG	phrog_2597	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-0070936_38	UniRef90	UniRef90_A0A416DTN0	DNA primase	NA
UHGV-0070936_38	eggNOG-mapper	552396.HMPREF0863_02435	Primase C terminal 2 (PriCT-2)	NA
UHGV-0070936_38	Pfam	PF08707	Primase C terminal 2 (PriCT-2)	PriCT_2
UHGV-0070936_38	Pfam	PF13481	AAA domain	AAA_25
UHGV-0070936_38	COG	COG3598	RecA-family ATPase	NA
UHGV-0070936_38	Structural annotation	PF13481, PF16793, PF08220, MF_00350, MF_00700, NF006606, NF001641, COG3598, COG3285	NA	NA
UHGV-0070936_39	KOfam	K17677	IRC3; ATP-dependent helicase IRC3 [EC:5.6.2.-]	NA
UHGV-0070936_39	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0070936_39	UniRef90	UniRef90_A0A416DTL8	DEAD/DEAH box helicase	NA
UHGV-0070936_39	eggNOG-mapper	552396.HMPREF0863_02436	helicase superfamily c-terminal domain	NA
UHGV-0070936_39	PADLOC	mREase_IV_00005	Type IV methyl-directed restriction enzyme	RM
UHGV-0070936_39	Pfam	PF04851	Type III restriction enzyme, res subunit	ResIII
UHGV-0070936_39	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0070936_39	COG	COG1061	Superfamily II DNA or RNA helicase	NA
UHGV-0070936_39	Structural annotation	PF04851, PF16203, MF_01489, NF008521, COG1061	NA	NA
UHGV-0070936_40	PHROG	phrog_2698	NA	unknown function
UHGV-0070936_40	UniRef90	UniRef90_UPI001D06D56E	NA	NA
UHGV-0070936_40	eggNOG-mapper	1232449.BAHV02000008_gene619	NA	NA
UHGV-0070936_40	Structural annotation	PF05037	NA	NA
UHGV-0070936_41	PHROG	phrog_124	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0070936_41	UniRef90	UniRef90_UPI00059A940B	ATP-binding protein	NA
UHGV-0070936_41	eggNOG-mapper	552396.HMPREF0863_02438	AAA domain	NA
UHGV-0070936_41	Pfam	PF13479	AAA domain	AAA_24
UHGV-0070936_41	Structural annotation	PF13479, MF_00268, TIGR01618, COG0468	NA	NA
UHGV-0070936_42	KOfam	K03546	sbcC, rad50; DNA repair protein SbcC/Rad50	NA
UHGV-0070936_42	PHROG	phrog_1499	NA	unknown function
UHGV-0070936_42	UniRef90	UniRef90_A0A1C5T7V9	Predicted ATP-binding protein involved in virulence	NA
UHGV-0070936_42	eggNOG-mapper	1235792.C808_05391	AAA domain	NA
UHGV-0070936_42	Pfam	PF13476	AAA domain	AAA_23
UHGV-0070936_42	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0070936_42	Structural annotation	PF11398, MF_00365, TIGR00634, COG0497	NA	NA
UHGV-0070936_45	UniRef90	UniRef90_A0A416DT94	DNA-binding protein	NA
UHGV-0070936_46	Structural annotation	PF07408, MF_01560, NF010187, COG4838	NA	NA
UHGV-0070936_48	UniRef90	UniRef90_A0A3E3EH66	NA	NA
UHGV-0070936_48	Pfam	PF13031	NA	DUF3892
UHGV-0070936_48	Structural annotation	PF13031	NA	NA
UHGV-0070936_49	PHROG	phrog_585	NA	unknown function
UHGV-0070936_49	UniRef90	UniRef90_UPI001F1D2BA2	NA	NA
UHGV-0070936_49	eggNOG-mapper	1158602.I590_03003	NA	NA
UHGV-0070936_49	Pfam	PF10711	NA	DUF2513
UHGV-0070936_49	Structural annotation	PF10711, TIGR04176, COG1695	NA	NA