UHGV-0070941

Genome information

Genome length 43,212 bps

CDS count 70

Completeness 90.33% (high-quality)

geNomad score 0.9787

Prediction confidence Confident

Genome information
Genome ID	UHGV-0070941
vOTU ID	vOTU-066765
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_112090
BioSample	NA
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	90.33% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9787
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	39.22
Jumbo phage	No

Genome content
Genome length	43,212 bps
GC content	32.71%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	70
CDS density	88.78%
Average CDS length	551.10 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0070941_2	UniRef90	UniRef90_A0A415E1A8	Holin	NA
UHGV-0070941_2	eggNOG-mapper	97138.C820_00249	Bacteriophage holin	NA
UHGV-0070941_2	Pfam	PF04531	Bacteriophage holin	Phage_holin_1
UHGV-0070941_2	NCBIFam	TIGR01598.1	phage holin	NA
UHGV-0070941_2	COG	COG5546	NA	NA
UHGV-0070941_3	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0070941_3	PHROG	phrog_9611	endolysin	lysis
UHGV-0070941_3	UniRef90	UniRef90_N1ZHY5	N-acetylmuramoyl-L-alanine amidase domain-containing protein	NA
UHGV-0070941_3	eggNOG-mapper	97138.C820_00251	Ami_2	NA
UHGV-0070941_3	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0070941_3	COG	COG3023	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	NA
UHGV-0070941_3	Structural annotation	PF01510, MF_04111, NF008758, COG5632	NA	NA
UHGV-0070941_5	eggNOG-mapper	1121423.JONT01000035_gene912	NA	NA
UHGV-0070941_5	NCBIFam	NF040910.1	CD1375 family protein	NA
UHGV-0070941_7	UniRef90	UniRef90_A0A3D4VUZ5	Flagellar basal-body rod protein	NA
UHGV-0070941_10	PHROG	phrog_1589	NA	unknown function
UHGV-0070941_10	UniRef90	UniRef90_UPI000D1E2A8F	glycine rich domain-containing protein	NA
UHGV-0070941_10	eggNOG-mapper	1151292.QEW_2455	NA	NA
UHGV-0070941_10	Pfam	PF12810	Glycine rich protein	Gly_rich
UHGV-0070941_10	Pfam	PF07523	Bacterial Ig-like domain (group 3)	Big_3
UHGV-0070941_11	PHROG	phrog_13879	NA	unknown function
UHGV-0070941_11	eggNOG-mapper	665956.HMPREF1032_03055	NA	NA
UHGV-0070941_11	Structural annotation	PF14594, PF03256, NF033848, COG4379, COG5156	NA	NA
UHGV-0070941_12	PHROG	phrog_1194	NA	unknown function
UHGV-0070941_12	eggNOG-mapper	665956.HMPREF1032_03056	NA	NA
UHGV-0070941_12	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0070941_13	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0070941_13	UniRef90	UniRef90_A0A174GX48	Phage-like protein	NA
UHGV-0070941_13	eggNOG-mapper	483218.BACPEC_01146	domain protein	NA
UHGV-0070941_13	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0070941_15	Pfam	PF12363	Phage tail assembly chaperone protein, TAC	Phage_TAC_12
UHGV-0070941_16	PHROG	phrog_158	major tail protein	tail
UHGV-0070941_16	UniRef90	UniRef90_UPI00189AB4AD	phage tail protein	NA
UHGV-0070941_16	eggNOG-mapper	1232453.BAIF02000058_gene1634	NA	NA
UHGV-0070941_16	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-0070941_17	PHROG	phrog_78	tail terminator	connector
UHGV-0070941_17	Structural annotation	PF06141, TIGR02367, COG3167	NA	NA
UHGV-0070941_18	UniRef90	UniRef90_UPI001D096349	HK97 gp10 family phage protein	NA
UHGV-0070941_18	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0070941_20	PHROG	phrog_132	head-tail adaptor	connector
UHGV-0070941_20	UniRef90	UniRef90_A0A374HKI7	DNA-packaging protein	NA
UHGV-0070941_20	eggNOG-mapper	996306.SSUR61_0983	NA	NA
UHGV-0070941_20	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0070941_20	Structural annotation	TIGR01560	NA	NA
UHGV-0070941_22	PHROG	phrog_247	major head protein	head and packaging
UHGV-0070941_22	UniRef90	UniRef90_A0A3D0LY55	Coat protein	NA
UHGV-0070941_22	eggNOG-mapper	903814.ELI_3208	NA	NA
UHGV-0070941_22	Structural annotation	PF20036, MF_04113, TIGR04387, COG4653	NA	NA
UHGV-0070941_23	PHROG	phrog_172	head scaffolding protein	head and packaging
UHGV-0070941_23	UniRef90	UniRef90_UPI001CD68899	NA	NA
UHGV-0070941_23	Pfam	PF14265	NA	DUF4355
UHGV-0070941_23	Structural annotation	PF14265	NA	NA
UHGV-0070941_24	PHROG	phrog_64	portal protein	head and packaging
UHGV-0070941_24	UniRef90	UniRef90_A0A3D0LYK0	Phage portal protein	NA
UHGV-0070941_24	eggNOG-mapper	1121866.AUGK01000003_gene1429	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0070941_24	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0070941_24	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0070941_25	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0070941_25	UniRef90	UniRef90_A0A7G9WJY4	Phage terminase large subunit	NA
UHGV-0070941_25	eggNOG-mapper	1298920.KI911353_gene2682	TIGRFAM Phage	NA
UHGV-0070941_25	NCBIFam	TIGR01630.1	phage terminase large subunit	NA
UHGV-0070941_25	COG	COG5410	NA	NA
UHGV-0070941_25	Structural annotation	PF17289, PF02562, MF_04147, NF033889, COG5362, COG5410	NA	NA
UHGV-0070941_27	PHROG	phrog_7339	DNA repair exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0070941_27	UniRef90	UniRef90_A0A136Q8Q2	Ser/Thr phosphatase family protein	NA
UHGV-0070941_27	eggNOG-mapper	443254.Marpi_0340	metallophosphoesterase	NA
UHGV-0070941_27	Pfam	PF00149	Calcineurin-like phosphoesterase	Metallophos
UHGV-0070941_27	COG	COG1408	Predicted phosphohydrolase, MPP superfamily	NA
UHGV-0070941_27	Structural annotation	PF12850, MF_00325, NF003118, COG1311	NA	NA
UHGV-0070941_30	PHROG	phrog_4331	NA	unknown function
UHGV-0070941_30	Pfam	PF00412	LIM domain	LIM
UHGV-0070941_40	PHROG	phrog_16351	DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0070941_40	eggNOG-mapper	665950.HMPREF1025_02544	NA	NA
UHGV-0070941_43	UniRef90	UniRef90_A0A2V2FXX9	HTH psq-type domain-containing protein	NA
UHGV-0070941_43	eggNOG-mapper	547042.BACCOPRO_02161	NA	NA
UHGV-0070941_43	Pfam	PF13936	Helix-turn-helix domain	HTH_38
UHGV-0070941_43	Structural annotation	PF02796, NF040785, COG1710	NA	NA
UHGV-0070941_45	KOfam	K01520	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	NA
UHGV-0070941_45	PHROG	phrog_135	dUTPase	DNA, RNA and nucleotide metabolism
UHGV-0070941_45	UniRef90	UniRef90_UPI0004647FA1	dUTP diphosphatase	NA
UHGV-0070941_45	eggNOG-mapper	1121333.JMLH01000001_gene1952	dUTP diphosphatase	NA
UHGV-0070941_45	Pfam	PF00692	dUTPase	dUTPase
UHGV-0070941_45	COG	COG0756	dUTP pyrophosphatase (dUTPase)	NA
UHGV-0070941_45	Structural annotation	PF00692, MF_00116, NF010561, COG0756	NA	NA
UHGV-0070941_49	KOfam	K04068	nrdG; anaerobic ribonucleoside-triphosphate reductase activating protein [EC:1.97.1.4]	NA
UHGV-0070941_49	PHROG	phrog_626	anaerobic ribonucleotide reductase small subunit	DNA, RNA and nucleotide metabolism
UHGV-0070941_49	UniRef90	UniRef90_A0A397QY52	Anaerobic ribonucleoside-triphosphate reductase-activating protein	NA
UHGV-0070941_49	eggNOG-mapper	545697.HMPREF0216_03027	Activation of anaerobic ribonucleoside-triphosphate reductase under anaerobic conditions by generation of an organic free radical, using S-adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine	NA
UHGV-0070941_49	Pfam	PF13353	4Fe-4S single cluster domain	Fer4_12
UHGV-0070941_49	NCBIFam	TIGR02491.1	anaerobic ribonucleoside-triphosphate reductase activating protein	NA
UHGV-0070941_49	COG	COG0602	Organic radical activating enzyme NrdG/QueE	NA
UHGV-0070941_49	Structural annotation	PF13353, MF_00917, TIGR02491, COG0602	NA	NA
UHGV-0070941_50	KOfam	K21636	nrdD; ribonucleoside-triphosphate reductase (formate) [EC:1.1.98.6]	NA
UHGV-0070941_50	PHROG	phrog_487	NrdD-like anaerobic ribonucleotide reductase large subunit	moron, auxiliary metabolic gene and host takeover
UHGV-0070941_50	UniRef90	UniRef90_R7M1S9	Anaerobic ribonucleoside-triphosphate reductase	NA
UHGV-0070941_50	eggNOG-mapper	1123313.ATUT01000005_gene194	NA	NA
UHGV-0070941_50	Pfam	PF03477	ATP cone domain	ATP-cone
UHGV-0070941_50	Pfam	PF13597	Anaerobic ribonucleoside-triphosphate reductase	NRDD
UHGV-0070941_50	NCBIFam	NF006732.0	anaerobic ribonucleoside-triphosphate reductase	NA
UHGV-0070941_50	COG	COG1328	Anaerobic ribonucleoside-triphosphate reductase	NA
UHGV-0070941_50	Structural annotation	PF13597, PF03477, MF_00440, NF006732, COG1328	NA	NA
UHGV-0070941_52	KOfam	K07171	mazF, ndoA, chpA; mRNA interferase MazF [EC:3.1.-.-]	NA
UHGV-0070941_52	PHROG	phrog_1936	MazF-like growth inhibitor	moron, auxiliary metabolic gene and host takeover
UHGV-0070941_52	UniRef90	UniRef90_A0A7C7AFL9	mRNA interferase	NA
UHGV-0070941_52	eggNOG-mapper	1408422.JHYF01000003_gene843	Toxic component of a toxin-antitoxin (TA) module	NA
UHGV-0070941_52	Pfam	PF02452	PemK-like, MazF-like toxin of type II toxin-antitoxin system	PemK_toxin
UHGV-0070941_52	COG	COG2337	mRNA-degrading endonuclease MazF, toxin component of the MazEF toxin-antitoxin module	NA
UHGV-0070941_52	Structural annotation	PF02452, NF007386, COG2337	NA	NA
UHGV-0070941_53	PHROG	phrog_236	nucleotide kinase	other
UHGV-0070941_53	UniRef90	UniRef90_UPI0009BB3BF0	NA	NA
UHGV-0070941_53	eggNOG-mapper	546273.VEIDISOL_00707	NA	NA
UHGV-0070941_53	Pfam	PF11753	NA	DUF3310
UHGV-0070941_55	KOfam	K06919	K06919; putative DNA primase/helicase	NA
UHGV-0070941_55	PHROG	phrog_864	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-0070941_55	UniRef90	UniRef90_A0A517DVL0	SF3 helicase domain-containing protein	NA
UHGV-0070941_55	eggNOG-mapper	1304284.L21TH_2612	TIGRFAM phage plasmid primase, P4 family, C-terminal domain	NA
UHGV-0070941_55	Pfam	PF08706	D5 N terminal like	D5_N
UHGV-0070941_55	Pfam	PF19263	NA	DUF5906
UHGV-0070941_55	NCBIFam	TIGR01613.1	phage/plasmid primase, P4 family	NA
UHGV-0070941_55	COG	COG3378	DNA primase, phage- or plasmid-associated	NA
UHGV-0070941_55	Structural annotation	PF19263, PF08706, PF03288, PF09250, MF_04000, TIGR01613, COG3378	NA	NA
UHGV-0070941_56	KOfam	K03698	cbf, cbf1; 3'-5' exoribonuclease [EC:3.1.-.-]	NA
UHGV-0070941_56	PHROG	phrog_28876	metal-dependent phosphohydrolase	other
UHGV-0070941_56	UniRef90	UniRef90_A0A1Q6L3K8	Hydrolase	NA
UHGV-0070941_56	eggNOG-mapper	1195236.CTER_0834	metal-dependent phosphohydrolase, HD sub domain	NA
UHGV-0070941_56	Pfam	PF01966	HD domain	HD
UHGV-0070941_56	COG	COG3481	3'-5' exoribonuclease YhaM, can participate in 23S rRNA maturation, HD superfamily	NA
UHGV-0070941_56	Structural annotation	PF07514, MF_01427, NF010007, COG3481	NA	NA
UHGV-0070941_57	KOfam	K02319	pol; DNA polymerase, archaea type [EC:2.7.7.7]	NA
UHGV-0070941_57	PHROG	phrog_1252	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0070941_57	UniRef90	UniRef90_W2E6Y1	Phage DNA polymerase	NA
UHGV-0070941_57	eggNOG-mapper	203119.Cthe_1735	DNA polymerase elongation subunit (Family B)	NA
UHGV-0070941_57	Pfam	PF00136	DNA polymerase family B	DNA_pol_B
UHGV-0070941_57	COG	COG0417	DNA polymerase B elongation subunit	NA
UHGV-0070941_57	Structural annotation	PF08490, MF_04100, TIGR00592, COG0417	NA	NA
UHGV-0070941_60	KOfam	K03465	thyX, thy1; thymidylate synthase (FAD) [EC:2.1.1.148]	NA
UHGV-0070941_60	PHROG	phrog_85	thymidylate synthase	DNA, RNA and nucleotide metabolism
UHGV-0070941_60	UniRef90	UniRef90_A0A1M6QMS3	Thymidylate synthase (FAD)	NA
UHGV-0070941_60	eggNOG-mapper	573370.DMR_30810	Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor, and NADPH and FADH(2) as the reductant	NA
UHGV-0070941_60	Pfam	PF02511	Thymidylate synthase complementing protein	Thy1
UHGV-0070941_60	COG	COG1351	Thymidylate synthase ThyX, FAD-dependent family	NA
UHGV-0070941_60	Structural annotation	PF02511, MF_01408, TIGR02170, COG1351	NA	NA
UHGV-0070941_63	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0070941_63	UniRef90	UniRef90_B0PAM4	YqaJ domain-containing protein	NA
UHGV-0070941_63	eggNOG-mapper	1462526.BN990_01808	NA	NA
UHGV-0070941_63	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-0070941_64	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0070941_64	UniRef90	UniRef90_A0A2D3PA24	Recombinase	NA
UHGV-0070941_64	eggNOG-mapper	1522092.A0A090D840_9CAUD	ERF superfamily	NA
UHGV-0070941_64	Pfam	PF04404	ERF superfamily	ERF
UHGV-0070941_64	Structural annotation	PF04404, TIGR00607, COG4712	NA	NA
UHGV-0070941_67	PHROG	phrog_3490	ERCC4-type nuclease	DNA, RNA and nucleotide metabolism
UHGV-0070941_67	UniRef90	UniRef90_UPI001AEB244B	ERCC4 domain-containing protein	NA
UHGV-0070941_67	eggNOG-mapper	386415.NT01CX_0838	ERCC4 domain	NA
UHGV-0070941_67	Pfam	PF02732	ERCC4 domain	ERCC4
UHGV-0070941_67	Structural annotation	PF02732, NF040956, COG1948	NA	NA
UHGV-0070941_68	PHROG	phrog_1233	NA	unknown function
UHGV-0070941_68	UniRef90	UniRef90_UPI001C39EFB9	Dienelactone hydrolase family protein	NA
UHGV-0070941_68	eggNOG-mapper	33035.JPJF01000106_gene3130	NA	NA
UHGV-0070941_68	Structural annotation	PF13058	NA	NA
UHGV-0070941_70	KOfam	K03091	sigH; RNA polymerase sporulation-specific sigma factor	NA
UHGV-0070941_70	PHROG	phrog_351	RNA polymerase sigma factor	transcription regulation
UHGV-0070941_70	UniRef90	UniRef90_A0A1C5KJ94	RNA polymerase sigma factor, sigma-70 family	NA
UHGV-0070941_70	eggNOG-mapper	521098.Aaci_1081	sigma factor activity	NA
UHGV-0070941_70	Pfam	PF04542	Sigma-70 region 2	Sigma70_r2
UHGV-0070941_70	Pfam	PF04545	Sigma-70, region 4	Sigma70_r4
UHGV-0070941_70	NCBIFam	TIGR02937.1	sigma-70 family RNA polymerase sigma factor	NA
UHGV-0070941_70	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0070941_70	Structural annotation	PF04542, PF08281, MF_00962, NF004471, COG1191	NA	NA