UHGV-0071049

Genome information

vOTU vOTU-019793

Genome length 32,187 bps

CDS count 75

Completeness 89.24% (medium-quality)

geNomad score 0.9753

Prediction confidence Confident

Genome information
Genome ID	UHGV-0071049
vOTU ID	vOTU-019793
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_137509
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	89.24% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	10
CheckV host markers	3
Recoded stop codon	No

Viral signal
geNomad score	0.9753
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	25.72
Jumbo phage	No

Genome content
Genome length	32,187 bps
GC content	46.89%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	75
CDS density	90.96%
Average CDS length	394.84 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0071049_1	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0071049_1	UniRef90	UniRef90_G9YSB5	HNH domain-containing protein	NA
UHGV-0071049_1	eggNOG-mapper	936140.AEOT01000014_gene1352	HNH nucleases	NA
UHGV-0071049_1	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0071049_2	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0071049_2	UniRef90	UniRef90_E4L8B7	Sigma70_r4 domain-containing protein	NA
UHGV-0071049_2	eggNOG-mapper	1410624.JNKK01000017_gene1964	sigma factor activity	NA
UHGV-0071049_2	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0071049_2	Structural annotation	PF04545, MF_00674, NF009180, COG1342	NA	NA
UHGV-0071049_4	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0071049_4	PHROG	phrog_498	DNA methyltransferase	other
UHGV-0071049_4	UniRef90	UniRef90_A0A6L5TVY7	Methyltransferase	NA
UHGV-0071049_4	eggNOG-mapper	742823.HMPREF9465_00225	PFAM DNA methylase N-4 N-6	NA
UHGV-0071049_4	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-0071049_4	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0071049_4	COG	COG0863	DNA modification methylase	NA
UHGV-0071049_4	Structural annotation	PF01555, MF_01872, NF010253, COG0863	NA	NA
UHGV-0071049_5	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0071049_5	PHROG	phrog_498	DNA methyltransferase	other
UHGV-0071049_5	UniRef90	UniRef90_UPI001D02B0A1	site-specific DNA-methyltransferase	NA
UHGV-0071049_5	eggNOG-mapper	1127695.HMPREF9163_00429	Belongs to the N(4) N(6)-methyltransferase family	NA
UHGV-0071049_5	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-0071049_5	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0071049_5	COG	COG0863	DNA modification methylase	NA
UHGV-0071049_5	Structural annotation	PF02195, MF_02015, TIGR04285, COG1475	NA	NA
UHGV-0071049_13	PHROG	phrog_924	NA	unknown function
UHGV-0071049_13	UniRef90	UniRef90_UPI00195D1DCA	NA	NA
UHGV-0071049_13	Pfam	PF04448	NA	DUF551
UHGV-0071049_13	Structural annotation	PF04448, NF041588	NA	NA
UHGV-0071049_17	PHROG	phrog_757	DNA methyltransferase	other
UHGV-0071049_17	UniRef90	UniRef90_A0A7J2REI9	DNA cytosine methyltransferase	NA
UHGV-0071049_17	eggNOG-mapper	1291050.JAGE01000001_gene2906	DNA (cytosine-5-)-methyltransferase activity	NA
UHGV-0071049_17	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0071049_17	Structural annotation	PF00145, MF_01872, TIGR00675, COG0270	NA	NA
UHGV-0071049_21	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0071049_21	PHROG	phrog_34	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0071049_21	UniRef90	UniRef90_C7RH80	Endodeoxyribonuclease RusA	NA
UHGV-0071049_21	eggNOG-mapper	525919.Apre_0813	Endodeoxyribonuclease RusA	NA
UHGV-0071049_21	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0071049_21	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0071049_21	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0071049_22	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0071049_22	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0071049_22	UniRef90	UniRef90_A0A1W1VQW5	Single-stranded DNA-binding protein	NA
UHGV-0071049_22	eggNOG-mapper	635013.TherJR_2978	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0071049_22	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0071049_22	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0071049_22	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0071049_22	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0071049_22	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0071049_24	PHROG	phrog_16304	NA	unknown function
UHGV-0071049_24	eggNOG-mapper	33035.JPJF01000071_gene4467	NA	NA
UHGV-0071049_24	Pfam	PF19808	NA	DUF6291
UHGV-0071049_24	Pfam	PF07261	Replication initiation and membrane attachment	DnaB_2
UHGV-0071049_24	NCBIFam	TIGR01446.1	DnaD domain protein	NA
UHGV-0071049_24	Structural annotation	PF19808, TIGR01446	NA	NA
UHGV-0071049_25	PHROG	phrog_5070	NA	unknown function
UHGV-0071049_25	UniRef90	UniRef90_A0A3A9AGI5	Polymer-forming cytoskeletal protein	NA
UHGV-0071049_25	eggNOG-mapper	768710.DesyoDRAFT_1067	Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell	NA
UHGV-0071049_25	Pfam	PF18836	YdcK Beta solenoid repeat	B_solenoid_ydck
UHGV-0071049_25	COG	COG1044	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase	NA
UHGV-0071049_25	Structural annotation	MF_01691, NF040481	NA	NA
UHGV-0071049_31	KOfam	K01449	cwlJ, sleB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0071049_31	PHROG	phrog_938	endolysin	lysis
UHGV-0071049_31	UniRef90	UniRef90_R6DPB3	Putative Cell wall hydrolase	NA
UHGV-0071049_31	eggNOG-mapper	1274524.BSONL12_12176	COG3773 Cell wall hydrolyses involved in spore germination	NA
UHGV-0071049_31	Pfam	PF07486	Cell Wall Hydrolase	Hydrolase_2
UHGV-0071049_31	COG	COG3773	Cell wall hydrolase CwlJ, involved in spore germination	NA
UHGV-0071049_31	Structural annotation	PF07486, TIGR02869, COG3773	NA	NA
UHGV-0071049_34	Structural annotation	PF08679, MF_01177, NF038268, COG1846	NA	NA
UHGV-0071049_35	PHROG	phrog_643	transcriptional regulator	transcription regulation
UHGV-0071049_35	Pfam	PF11195	NA	DUF2829
UHGV-0071049_35	Structural annotation	PF11195	NA	NA
UHGV-0071049_39	UniRef90	UniRef90_A0A415TAI7	XRE family transcriptional regulator	NA
UHGV-0071049_39	eggNOG-mapper	768486.EHR_02785	NA	NA
UHGV-0071049_39	Structural annotation	PF05339, MF_00535, NF041951, COG3655	NA	NA
UHGV-0071049_40	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0071049_40	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-0071049_40	UniRef90	UniRef90_UPI0005E915F7	helix-turn-helix domain-containing protein	NA
UHGV-0071049_40	eggNOG-mapper	645991.Sgly_0310	PFAM Peptidase S24 S26A S26B, conserved region	NA
UHGV-0071049_40	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0071049_40	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0071049_40	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0071049_42	PHROG	phrog_4980	superinfection exclusion	moron, auxiliary metabolic gene and host takeover
UHGV-0071049_42	UniRef90	UniRef90_A0A134AC14	Copper amine oxidase domain protein	NA
UHGV-0071049_42	eggNOG-mapper	642492.Clole_3420	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides	NA
UHGV-0071049_42	Pfam	PF07833	Copper amine oxidase N-terminal domain	Cu_amine_oxidN1
UHGV-0071049_42	Pfam	PF07553	Host cell surface-exposed lipoprotein	Lipoprotein_Ltp
UHGV-0071049_42	COG	COG0652	Peptidyl-prolyl cis-trans isomerase (rotamase) - cyclophilin family	NA
UHGV-0071049_43	KOfam	K14059	int; integrase	NA
UHGV-0071049_43	PHROG	phrog_1	integrase	integration and excision
UHGV-0071049_43	UniRef90	UniRef90_Q3ABG2	Prophage LambdaCh01, site-specific recombinase, phage integrase family	NA
UHGV-0071049_43	eggNOG-mapper	246194.CHY_1702	Belongs to the 'phage' integrase family	NA
UHGV-0071049_43	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0071049_43	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0071049_43	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0071049_43	Structural annotation	PF00589, PF14659, PF14657, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-0071049_46	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0071049_48	KOfam	K07726	K07726; putative transcriptional regulator	NA
UHGV-0071049_48	PHROG	phrog_2104	NA	unknown function
UHGV-0071049_48	UniRef90	UniRef90_A0A1Q9JGI6	RHH_1 domain-containing protein	NA
UHGV-0071049_48	eggNOG-mapper	1095750.HMPREF9970_2261	NA	NA
UHGV-0071049_48	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0071049_48	Structural annotation	PF08965, PF19849, NF041951, COG2944	NA	NA
UHGV-0071049_50	Pfam	PF04545	Sigma-70, region 4	Sigma70_r4
UHGV-0071049_51	KOfam	K19304	mepM; murein DD-endopeptidase [EC:3.4.24.-]	NA
UHGV-0071049_51	PHROG	phrog_7767	metallo-endopeptidase	other
UHGV-0071049_51	UniRef90	UniRef90_A0A2V2EQ01	Peptidase_M23 domain-containing protein	NA
UHGV-0071049_51	eggNOG-mapper	33898.JRHJ01000001_gene581	Peptidase family M23	NA
UHGV-0071049_51	Pfam	PF01551	Peptidase family M23	Peptidase_M23
UHGV-0071049_51	COG	COG0739	Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contains LysM domain	NA
UHGV-0071049_51	Structural annotation	PF01551, MF_00664, NF040883, COG0739	NA	NA
UHGV-0071049_54	PHROG	phrog_297	holin	lysis
UHGV-0071049_54	UniRef90	UniRef90_N1ZDK1	Phage phi LC3 family holin	NA
UHGV-0071049_54	eggNOG-mapper	97138.C820_02010	Bacteriophage holin	NA
UHGV-0071049_54	Pfam	PF04531	Bacteriophage holin	Phage_holin_1
UHGV-0071049_54	NCBIFam	TIGR01598.1	phage holin	NA
UHGV-0071049_54	COG	COG5546	NA	NA
UHGV-0071049_54	Structural annotation	COG5546	NA	NA
UHGV-0071049_55	PHROG	phrog_1863	NA	unknown function
UHGV-0071049_55	eggNOG-mapper	748224.HMPREF9436_01412	NA	NA
UHGV-0071049_56	PHROG	phrog_16701	peptidase	other
UHGV-0071049_56	UniRef90	UniRef90_A0A352NP54	Pept_C1 domain-containing protein	NA
UHGV-0071049_56	eggNOG-mapper	1449126.JQKL01000005_gene891	Copper amine oxidase N-terminal domain	NA
UHGV-0071049_56	Pfam	PF00112	Papain family cysteine protease	Peptidase_C1
UHGV-0071049_56	Pfam	PF07833	Copper amine oxidase N-terminal domain	Cu_amine_oxidN1
UHGV-0071049_56	COG	COG3292	Periplasmic ligand-binding sensor domain	NA
UHGV-0071049_56	Structural annotation	PF00112, PF07833, COG4870	NA	NA
UHGV-0071049_58	PHROG	phrog_13589	NA	unknown function
UHGV-0071049_58	eggNOG-mapper	411460.RUMTOR_01324	NA	NA
UHGV-0071049_59	PHROG	phrog_31538	NA	unknown function
UHGV-0071049_59	eggNOG-mapper	428125.CLOLEP_01433	NA	NA
UHGV-0071049_60	Structural annotation	PF10651, NF038186	NA	NA
UHGV-0071049_61	Pfam	PF09693	Phage uncharacterised protein (Phage_XkdX)	Phage_XkdX
UHGV-0071049_61	Structural annotation	PF09693, TIGR01669	NA	NA
UHGV-0071049_63	PHROG	phrog_863	tail fiber assembly	tail
UHGV-0071049_63	eggNOG-mapper	1232449.BAHV02000010_gene2732	NA	NA
UHGV-0071049_63	Pfam	PF21722	Glycine-rich domain	Gly_rich_2
UHGV-0071049_63	Structural annotation	PF21722	NA	NA
UHGV-0071049_65	PHROG	phrog_18725	NA	unknown function
UHGV-0071049_65	eggNOG-mapper	1226322.HMPREF1545_00062	NA	NA
UHGV-0071049_66	PHROG	phrog_13879	NA	unknown function
UHGV-0071049_66	eggNOG-mapper	645991.Sgly_0356	NA	NA
UHGV-0071049_66	Structural annotation	PF14594, PF03256, NF033848, COG4379, COG5156	NA	NA
UHGV-0071049_67	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0071049_68	PHROG	phrog_23464	NA	unknown function
UHGV-0071049_68	eggNOG-mapper	665950.HMPREF1025_02660	phage tail tape measure protein	NA
UHGV-0071049_68	COG	COG5283	Phage-related tail protein	NA
UHGV-0071049_69	Structural annotation	PF11836	NA	NA
UHGV-0071049_70	PHROG	phrog_88	major tail protein	tail
UHGV-0071049_70	UniRef90	UniRef90_G9YSC5	Phage major tail protein, phi13 family	NA
UHGV-0071049_70	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0071049_70	COG	COG5492	NA	NA
UHGV-0071049_70	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0071049_71	eggNOG-mapper	908340.HMPREF9406_2573	NA	NA
UHGV-0071049_71	Structural annotation	TIGR01725	NA	NA
UHGV-0071049_72	eggNOG-mapper	908340.HMPREF9406_2574	NA	NA
UHGV-0071049_72	Structural annotation	PF05657, COG3167	NA	NA
UHGV-0071049_73	PHROG	phrog_19734	NA	unknown function
UHGV-0071049_73	eggNOG-mapper	349161.Dred_2602	NA	NA
UHGV-0071049_73	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0071049_74	PHROG	phrog_749	NA	unknown function
UHGV-0071049_74	UniRef90	UniRef90_A0A7V7BBS9	Phage gp6-like head-tail connector protein	NA
UHGV-0071049_74	eggNOG-mapper	349161.Dred_2603	NA	NA
UHGV-0071049_75	Pfam	PF12733	Cadherin-like beta sandwich domain	Cadherin-like
UHGV-0071049_75	COG	COG5184	Alpha-tubulin suppressor ATS1 and related RCC1 domain-containing proteins	NA