UHGV-0071132

Genome information

Genome length 28,285 bps

CDS count 49

Completeness 60.60% (medium-quality)

geNomad score 0.9789

Prediction confidence Confident

Genome information
Genome ID	UHGV-0071132
vOTU ID	vOTU-023599
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_120264
BioSample	SAMEA2580017
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	60.60% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9789
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	50.31
Jumbo phage	No

Genome content
Genome length	28,285 bps
GC content	39.77%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	49
CDS density	89.00%
Average CDS length	519.49 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0071132_1	eggNOG-mapper	397290.C810_01420	BRO family, N-terminal domain	NA
UHGV-0071132_1	COG	COG3617	Prophage antirepressor	NA
UHGV-0071132_2	PHROG	phrog_706	NA	unknown function
UHGV-0071132_2	UniRef90	UniRef90_UPI001CD5259B	bacteriophage Gp15 family protein	NA
UHGV-0071132_2	eggNOG-mapper	411460.RUMTOR_02091	COG NOG24969 non supervised orthologous group	NA
UHGV-0071132_2	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0071132_2	Structural annotation	PF06854	NA	NA
UHGV-0071132_3	PHROG	phrog_4450	NA	unknown function
UHGV-0071132_3	eggNOG-mapper	1280692.AUJL01000004_gene838	NA	NA
UHGV-0071132_3	Pfam	PF20378	NA	DUF6673
UHGV-0071132_3	Structural annotation	PF20378	NA	NA
UHGV-0071132_4	PHROG	phrog_3099	NA	unknown function
UHGV-0071132_4	UniRef90	UniRef90_A0A3P6KYP0	Phage capsid family protein	NA
UHGV-0071132_4	eggNOG-mapper	742723.HMPREF9477_00900	NA	NA
UHGV-0071132_4	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0071132_5	PHROG	phrog_3266	tail completion	connector
UHGV-0071132_5	UniRef90	UniRef90_UPI001570657D	chloramphenicol resistance protein	NA
UHGV-0071132_5	eggNOG-mapper	742723.HMPREF9477_00901	NA	NA
UHGV-0071132_5	Structural annotation	PF12691	NA	NA
UHGV-0071132_6	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0071132_6	UniRef90	UniRef90_UPI000E48DD75	minor capsid protein	NA
UHGV-0071132_6	eggNOG-mapper	742723.HMPREF9477_00902	Minor capsid protein	NA
UHGV-0071132_6	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0071132_6	Structural annotation	PF11114	NA	NA
UHGV-0071132_7	PHROG	phrog_3366	NA	unknown function
UHGV-0071132_7	eggNOG-mapper	742723.HMPREF9477_00903	NA	NA
UHGV-0071132_7	Pfam	PF20536	NA	DUF6751
UHGV-0071132_7	Structural annotation	PF20536, TIGR01563, COG5614	NA	NA
UHGV-0071132_8	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0071132_8	eggNOG-mapper	1235799.C818_04224	NA	NA
UHGV-0071132_9	PHROG	phrog_10972	tail fiber protein	tail
UHGV-0071132_9	UniRef90	UniRef90_UPI001D05A857	head fiber protein	NA
UHGV-0071132_9	eggNOG-mapper	1232443.BAIA02000078_gene28	domain, Protein	NA
UHGV-0071132_9	Pfam	PF11133	Head fiber protein	Phage_head_fibr
UHGV-0071132_9	COG	COG3266	Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain	NA
UHGV-0071132_10	eggNOG-mapper	1235799.C818_04223	NA	NA
UHGV-0071132_10	Structural annotation	PF11651, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0071132_11	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0071132_11	UniRef90	UniRef90_UPI000E47EB84	phage scaffolding protein	NA
UHGV-0071132_11	eggNOG-mapper	1235799.C818_04222	Phage minor structural protein GP20	NA
UHGV-0071132_11	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0071132_11	Structural annotation	PF06810	NA	NA
UHGV-0071132_12	UniRef90	UniRef90_R6AQU3	Conserved protein	NA
UHGV-0071132_12	eggNOG-mapper	1423758.BN55_08460	NA	NA
UHGV-0071132_12	Structural annotation	PF20111	NA	NA
UHGV-0071132_13	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0071132_13	UniRef90	UniRef90_UPI001CD5437D	phage minor capsid protein	NA
UHGV-0071132_13	eggNOG-mapper	742723.HMPREF9477_00909	Phage minor capsid protein 2	NA
UHGV-0071132_13	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0071132_13	COG	COG2369	NA	NA
UHGV-0071132_13	Structural annotation	PF06152	NA	NA
UHGV-0071132_14	PHROG	phrog_533	portal protein	head and packaging
UHGV-0071132_14	UniRef90	UniRef90_UPI00156E2A2F	phage capsid protein	NA
UHGV-0071132_14	eggNOG-mapper	1235799.C818_04218	NA	NA
UHGV-0071132_14	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0071132_15	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0071132_15	PHROG	phrog_10250	NA	unknown function
UHGV-0071132_15	UniRef90	UniRef90_UPI001CD3A8F7	PBSX family phage terminase large subunit	NA
UHGV-0071132_15	eggNOG-mapper	1235799.C818_04217	Phage terminase large subunit	NA
UHGV-0071132_15	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0071132_15	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0071132_15	COG	COG1783	Phage terminase large subunit	NA
UHGV-0071132_15	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0071132_16	PHROG	phrog_2412	NA	unknown function
UHGV-0071132_16	UniRef90	UniRef90_UPI001E414EFE	KGG domain-containing protein	NA
UHGV-0071132_16	eggNOG-mapper	742723.HMPREF9477_00912	NA	NA
UHGV-0071132_18	eggNOG-mapper	553973.CLOHYLEM_05570	NA	NA
UHGV-0071132_19	Structural annotation	PF15968	NA	NA
UHGV-0071132_20	PHROG	phrog_10865	NA	unknown function
UHGV-0071132_20	eggNOG-mapper	1506994.JNLQ01000002_gene584	NA	NA
UHGV-0071132_20	Pfam	PF20505	NA	DUF6731
UHGV-0071132_20	Structural annotation	PF20505, NF001463	NA	NA
UHGV-0071132_21	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0071132_21	eggNOG-mapper	742765.HMPREF9457_02116	NA	NA
UHGV-0071132_21	Structural annotation	PF02996	NA	NA
UHGV-0071132_26	PHROG	phrog_8684	NA	unknown function
UHGV-0071132_26	UniRef90	UniRef90_A0A855H8M3	YopX domain-containing protein	NA
UHGV-0071132_26	eggNOG-mapper	397290.C810_01526	YopX protein	NA
UHGV-0071132_26	Pfam	PF09643	YopX protein	YopX
UHGV-0071132_26	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-0071132_26	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0071132_27	eggNOG-mapper	97139.C824_00033	NA	NA
UHGV-0071132_28	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0071132_28	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0071132_28	UniRef90	UniRef90_UPI00046534C2	DNA cytosine methyltransferase	NA
UHGV-0071132_28	eggNOG-mapper	1289600.M1NSK8_9VIRU	C-5 cytosine-specific DNA methylase	NA
UHGV-0071132_28	PADLOC	MTase_II_00072	Type II methyltransferase	RM
UHGV-0071132_28	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0071132_28	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0071132_28	Structural annotation	PF00145, MF_00351, TIGR00675, COG0270	NA	NA
UHGV-0071132_31	PHROG	phrog_5968	replisome organizer	DNA, RNA and nucleotide metabolism
UHGV-0071132_31	UniRef90	UniRef90_A0A2N5P5D6	Phage_rep_org_N domain-containing protein	NA
UHGV-0071132_31	eggNOG-mapper	1462526.BN990_03905	N-terminal phage replisome organiser (Phage_rep_org_N)	NA
UHGV-0071132_31	Pfam	PF09681	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
UHGV-0071132_31	NCBIFam	TIGR01714.1	phage replisome organizer, putative, N-terminal region	NA
UHGV-0071132_31	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0071132_31	Structural annotation	PF09681, TIGR01714	NA	NA
UHGV-0071132_32	PHROG	phrog_34	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0071132_32	UniRef90	UniRef90_A0A0F0CCS0	Endodeoxyribonuclease RusA	NA
UHGV-0071132_32	eggNOG-mapper	742733.HMPREF9469_01846	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC	NA
UHGV-0071132_32	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0071132_32	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0071132_33	PHROG	phrog_7566	NA	unknown function
UHGV-0071132_33	eggNOG-mapper	742733.HMPREF9469_01847	NA	NA
UHGV-0071132_34	PHROG	phrog_1227	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0071132_34	UniRef90	UniRef90_A0A2N5P5E1	NA	NA
UHGV-0071132_34	eggNOG-mapper	33035.JPJF01000071_gene4463	NA	NA
UHGV-0071132_34	Pfam	PF12684	NA	DUF3799
UHGV-0071132_34	COG	COG1074	3'-5' helicase subunit RecB of the DNA repair enzyme RecBCD (exonuclease V)	NA
UHGV-0071132_34	Structural annotation	PF12684, TIGR01896, COG4343	NA	NA
UHGV-0071132_35	PHROG	phrog_561	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0071132_35	UniRef90	UniRef90_A0A6N7W7U3	Recombinase RecT	NA
UHGV-0071132_35	eggNOG-mapper	33035.JPJF01000071_gene4462	NA	NA
UHGV-0071132_35	Pfam	PF03837	RecT family	RecT
UHGV-0071132_35	Structural annotation	PF03837, TIGR01913, COG3723	NA	NA
UHGV-0071132_36	KOfam	K03546	sbcC, rad50; DNA repair protein SbcC/Rad50	NA
UHGV-0071132_36	PHROG	phrog_1499	NA	unknown function
UHGV-0071132_36	UniRef90	UniRef90_A0A2N5P5I0	AAA_23 domain-containing protein	NA
UHGV-0071132_36	eggNOG-mapper	742733.HMPREF9469_01850	DNA recombination	NA
UHGV-0071132_36	COG	COG0497	DNA repair ATPase RecN	NA
UHGV-0071132_36	Structural annotation	PF11398, MF_00365, NF008121, COG0497	NA	NA
UHGV-0071132_38	eggNOG-mapper	1235792.C808_03089	NA	NA
UHGV-0071132_41	PHROG	phrog_373	anti-repressor	transcription regulation
UHGV-0071132_41	UniRef90	UniRef90_UPI000E4A5456	Rha family transcriptional regulator	NA
UHGV-0071132_41	eggNOG-mapper	1304866.K413DRAFT_3063	TIGRFAM phage regulatory protein, Rha family	NA
UHGV-0071132_41	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-0071132_41	NCBIFam	TIGR02681.1	phage regulatory protein, Rha family	NA
UHGV-0071132_41	COG	COG3617	Prophage antirepressor	NA
UHGV-0071132_41	Structural annotation	PF09669, TIGR02681, COG3646	NA	NA
UHGV-0071132_42	PHROG	phrog_9188	NA	unknown function
UHGV-0071132_42	UniRef90	UniRef90_A0A316PYR3	Adenylate kinase	NA
UHGV-0071132_42	Structural annotation	PF11023, MF_01502, NF002796	NA	NA
UHGV-0071132_44	UniRef90	UniRef90_A0A412NBT7	XRE family transcriptional regulator	NA
UHGV-0071132_44	eggNOG-mapper	411461.DORFOR_00030	Helix-turn-helix XRE-family like proteins	NA
UHGV-0071132_44	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0071132_45	PHROG	phrog_2657	transcriptional regulator	transcription regulation
UHGV-0071132_45	UniRef90	UniRef90_A0A2N5PI67	Transcriptional regulator	NA
UHGV-0071132_45	eggNOG-mapper	411470.RUMGNA_03232	NA	NA
UHGV-0071132_45	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-0071132_45	NCBIFam	TIGR02681.1	phage regulatory protein, Rha family	NA
UHGV-0071132_45	COG	COG3646	Phage regulatory protein Rha	NA
UHGV-0071132_45	Structural annotation	PF09669, TIGR02681, COG3646	NA	NA
UHGV-0071132_46	UniRef90	UniRef90_UPI00156F0865	helix-turn-helix transcriptional regulator	NA
UHGV-0071132_46	eggNOG-mapper	1235798.C817_04758	NA	NA
UHGV-0071132_46	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0071132_46	Structural annotation	PF13443, NF010465, COG3655	NA	NA
UHGV-0071132_47	UniRef90	UniRef90_UPI00156E1494	helix-turn-helix transcriptional regulator	NA
UHGV-0071132_47	eggNOG-mapper	97139.C824_00060	Peptidase S24-like	NA
UHGV-0071132_47	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0071132_47	COG	COG2932	Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains	NA
UHGV-0071132_47	Structural annotation	PF01381, MF_00535, NF041951, COG3655	NA	NA
UHGV-0071132_48	PHROG	phrog_87	metallo-protease	other
UHGV-0071132_48	UniRef90	UniRef90_F7JQG6	Peptidase_M78 domain-containing protein	NA
UHGV-0071132_48	eggNOG-mapper	411470.RUMGNA_03229	NA	NA
UHGV-0071132_48	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0071132_48	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0071132_49	eggNOG-mapper	1256908.HMPREF0373_00641	T5orf172	NA
UHGV-0071132_49	COG	COG1196	Chromosome segregation ATPase Smc	NA