UHGV-0071240

Genome information

Genome length 40,127 bps

CDS count 52

Completeness 99.90% (high-quality)

geNomad score 0.9808

Prediction confidence Confident

Genome information
Genome ID	UHGV-0071240
vOTU ID	vOTU-064947
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_111522
BioSample	NA
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	36
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9808
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	90.6
Jumbo phage	No

Genome content
Genome length	40,127 bps
GC content	43.36%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	52
CDS density	94.94%
Average CDS length	735.92 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0071240_1	KOfam	K14059	int; integrase	NA
UHGV-0071240_1	PHROG	phrog_1	integrase	integration and excision
UHGV-0071240_1	UniRef90	UniRef90_A0A4D6A7V0	Integrase	NA
UHGV-0071240_1	eggNOG-mapper	768726.HMPREF9178_1092	Pfam:Integrase_AP2	NA
UHGV-0071240_1	Pfam	PF14657	Arm DNA-binding domain	Arm-DNA-bind_4
UHGV-0071240_1	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0071240_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0071240_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0071240_1	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0071240_3	PHROG	phrog_87	metallo-protease	other
UHGV-0071240_3	UniRef90	UniRef90_A0A6Z6WF32	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0071240_3	eggNOG-mapper	1035189.HMPREF9954_1970	IrrE N-terminal-like domain	NA
UHGV-0071240_3	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0071240_3	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0071240_3	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0071240_4	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-0071240_4	UniRef90	UniRef90_I2NHK6	DNA-binding helix-turn-helix protein	NA
UHGV-0071240_4	eggNOG-mapper	85154.O34035_BPO12	sequence-specific DNA binding	NA
UHGV-0071240_4	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0071240_4	Structural annotation	PF01381, NF007257, COG3655	NA	NA
UHGV-0071240_5	UniRef90	UniRef90_A0A4D6A8D3	HTH cro/C1-type domain-containing protein	NA
UHGV-0071240_5	eggNOG-mapper	272623.L39394	NA	NA
UHGV-0071240_5	Pfam	PF05339	NA	DUF739
UHGV-0071240_5	COG	COG3655	DNA-binding transcriptional regulator, XRE family	NA
UHGV-0071240_5	Structural annotation	PF05339, NF002773, COG1476	NA	NA
UHGV-0071240_6	PHROG	phrog_5238	NA	unknown function
UHGV-0071240_6	eggNOG-mapper	585203.SMSK564_1308	NA	NA
UHGV-0071240_9	KOfam	K03546	sbcC, rad50; DNA repair protein SbcC/Rad50	NA
UHGV-0071240_9	PHROG	phrog_1499	NA	unknown function
UHGV-0071240_9	UniRef90	UniRef90_I2NHU9	AAA_15 domain-containing protein	NA
UHGV-0071240_9	eggNOG-mapper	1000588.HMPREF9965_1724	AAA domain	NA
UHGV-0071240_9	Pfam	PF13476	AAA domain	AAA_23
UHGV-0071240_9	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0071240_9	Structural annotation	PF11398, MF_00365, TIGR00634, COG0497	NA	NA
UHGV-0071240_10	PHROG	phrog_2486	NA	unknown function
UHGV-0071240_10	UniRef90	UniRef90_A0A4V0EBD6	NA	NA
UHGV-0071240_11	PHROG	phrog_124	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0071240_11	UniRef90	UniRef90_A0A6Z7A482	ATP-binding protein	NA
UHGV-0071240_11	eggNOG-mapper	936580.HMPREF1516_0740	AAA domain	NA
UHGV-0071240_11	Pfam	PF13479	AAA domain	AAA_24
UHGV-0071240_11	Structural annotation	PF13479, MF_00268, TIGR01618, COG0468	NA	NA
UHGV-0071240_12	PHROG	phrog_1029	NA	unknown function
UHGV-0071240_12	UniRef90	UniRef90_A0A0P0N9M8	Phage-related protein	NA
UHGV-0071240_12	eggNOG-mapper	936580.HMPREF1516_0738	NA	NA
UHGV-0071240_12	Structural annotation	PF10065, COG5532	NA	NA
UHGV-0071240_13	PHROG	phrog_2698	NA	unknown function
UHGV-0071240_13	UniRef90	UniRef90_A0A4V0ECJ9	NA	NA
UHGV-0071240_13	eggNOG-mapper	1403946.Q615_SPAC00127G0153	NA	NA
UHGV-0071240_13	Structural annotation	PF05037	NA	NA
UHGV-0071240_14	KOfam	K17677	IRC3; ATP-dependent helicase IRC3 [EC:5.6.2.-]	NA
UHGV-0071240_14	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0071240_14	UniRef90	UniRef90_A0A359YH37	DNA helicase, phage-associated / Type III restriction enzme	NA
UHGV-0071240_14	eggNOG-mapper	936580.HMPREF1516_0736	helicase	NA
UHGV-0071240_14	PADLOC	mREase_IV_00005	Type IV methyl-directed restriction enzyme	RM
UHGV-0071240_14	Pfam	PF04851	Type III restriction enzyme, res subunit	ResIII
UHGV-0071240_14	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0071240_14	COG	COG1061	Superfamily II DNA or RNA helicase	NA
UHGV-0071240_14	Structural annotation	PF04851, PF16203, MF_01489, NF008521, COG1061	NA	NA
UHGV-0071240_15	UniRef90	UniRef90_A0A5J6LL43	LPXTG cell wall anchor domain-containing protein	NA
UHGV-0071240_15	eggNOG-mapper	435842.HMPREF0848_00198	Pilin isopeptide linkage domain protein	NA
UHGV-0071240_15	Pfam	PF17961	Bacterial Ig domain	Big_8
UHGV-0071240_15	Pfam	PF05737	Collagen binding domain	Collagen_bind
UHGV-0071240_15	NCBIFam	TIGR01167.1	LPXTG cell wall anchor domain-containing protein	NA
UHGV-0071240_15	COG	COG4932	Clumping factor A-related surface protein, MSCRAMM (microbial surface components recognizing adhesive matrix molecules) family, DEv-IgG fold	NA
UHGV-0071240_15	Structural annotation	PF05737, PF17961, NF000535	NA	NA
UHGV-0071240_16	KOfam	K07505	repA; regulatory protein RepA	NA
UHGV-0071240_16	PHROG	phrog_2597	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-0071240_16	UniRef90	UniRef90_A0A6Z6WPX3	DNA primase	NA
UHGV-0071240_16	eggNOG-mapper	936580.HMPREF1516_0733	Primase C terminal 2 (PriCT-2)	NA
UHGV-0071240_16	Pfam	PF08707	Primase C terminal 2 (PriCT-2)	PriCT_2
UHGV-0071240_16	Pfam	PF13481	AAA domain	AAA_25
UHGV-0071240_16	COG	COG3598	RecA-family ATPase	NA
UHGV-0071240_16	Structural annotation	PF13481, PF16793, PF08220, MF_00350, MF_00700, NF006606, NF001641, COG3598, COG3285	NA	NA
UHGV-0071240_17	PHROG	phrog_16687	NA	unknown function
UHGV-0071240_17	eggNOG-mapper	1214217.ALNF01000014_gene1395	NA	NA
UHGV-0071240_18	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0071240_18	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0071240_18	UniRef90	UniRef90_I2NHS8	Crossover junction endodeoxyribonuclease RusA	NA
UHGV-0071240_18	eggNOG-mapper	1000588.HMPREF9965_1714	Endodeoxyribonuclease RusA	NA
UHGV-0071240_18	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0071240_18	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0071240_18	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0071240_19	PHROG	phrog_3745	NA	unknown function
UHGV-0071240_19	eggNOG-mapper	1423734.JCM14202_3068	NA	NA
UHGV-0071240_21	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-0071240_21	UniRef90	UniRef90_A0A6Z6W8Z8	XRE family transcriptional regulator	NA
UHGV-0071240_21	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-0071240_21	COG	COG2932	Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains	NA
UHGV-0071240_21	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0071240_22	PHROG	phrog_121	NA	unknown function
UHGV-0071240_22	UniRef90	UniRef90_UPI0007795EF6	NA	NA
UHGV-0071240_22	eggNOG-mapper	365659.smi_0429	NA	NA
UHGV-0071240_22	Pfam	PF07852	NA	DUF1642
UHGV-0071240_22	Structural annotation	PF07852	NA	NA
UHGV-0071240_23	PHROG	phrog_2715	NA	unknown function
UHGV-0071240_23	UniRef90	UniRef90_U4KJB3	NA	NA
UHGV-0071240_23	eggNOG-mapper	999425.HMPREF9186_02019	NA	NA
UHGV-0071240_23	Structural annotation	PF18406	NA	NA
UHGV-0071240_24	PHROG	phrog_20205	NA	unknown function
UHGV-0071240_25	eggNOG-mapper	1121865.OMW_01950	NA	NA
UHGV-0071240_25	Structural annotation	PF18300, NF033216, COG4568	NA	NA
UHGV-0071240_27	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0071240_27	UniRef90	UniRef90_UPI0012BCB3B0	NA	NA
UHGV-0071240_27	eggNOG-mapper	936580.HMPREF1516_0728	sigma factor activity	NA
UHGV-0071240_27	Pfam	PF07374	NA	DUF1492
UHGV-0071240_27	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0071240_27	Structural annotation	PF07374, MF_00674, TIGR01636, COG2739	NA	NA
UHGV-0071240_28	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0071240_28	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0071240_28	UniRef90	UniRef90_A0A8G2JSU2	Terminase small subunit	NA
UHGV-0071240_28	eggNOG-mapper	1423754.BALY01000011_gene291	Terminase small subunit	NA
UHGV-0071240_28	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0071240_28	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0071240_28	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0071240_29	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0071240_29	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0071240_29	UniRef90	UniRef90_UPI0012BD7EF5	PBSX family phage terminase large subunit	NA
UHGV-0071240_29	eggNOG-mapper	1121871.AUAT01000040_gene913	Phage terminase, large subunit	NA
UHGV-0071240_29	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0071240_29	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0071240_29	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0071240_29	COG	COG1783	Phage terminase large subunit	NA
UHGV-0071240_29	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0071240_30	PHROG	phrog_533	portal protein	head and packaging
UHGV-0071240_30	UniRef90	UniRef90_UPI001BE74F17	phage portal protein	NA
UHGV-0071240_30	eggNOG-mapper	537874.B3GW00_9CAUD	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0071240_30	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0071240_30	NCBIFam	TIGR01542.1	phage portal protein	NA
UHGV-0071240_30	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0071240_31	KOfam	K11044	spyA; C3 family ADP-ribosyltransferase [EC:2.4.2.-]	NA
UHGV-0071240_31	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0071240_31	UniRef90	UniRef90_UPI0012BBAE7F	capsid protein	NA
UHGV-0071240_31	eggNOG-mapper	537874.B3GW01_9CAUD	Phage minor capsid protein 2	NA
UHGV-0071240_31	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0071240_31	Pfam	PF03496	ADP-ribosyltransferase exoenzyme	ADPrib_exo_Tox
UHGV-0071240_31	Structural annotation	PF06152, TIGR01641	NA	NA
UHGV-0071240_33	PHROG	phrog_2303	head scaffolding protein	head and packaging
UHGV-0071240_33	UniRef90	UniRef90_A0A150NS01	NA	NA
UHGV-0071240_33	eggNOG-mapper	537874.B3GW02_9CAUD	NA	NA
UHGV-0071240_34	PHROG	phrog_840	major head protein	head and packaging
UHGV-0071240_34	UniRef90	UniRef90_UPI001BEAC940	phage capsid protein	NA
UHGV-0071240_34	eggNOG-mapper	1277892.M1I9U6_9CAUD	NA	NA
UHGV-0071240_34	Structural annotation	PF03864, MF_04119, TIGR04387, COG1659	NA	NA
UHGV-0071240_35	PHROG	phrog_2910	NA	unknown function
UHGV-0071240_35	UniRef90	UniRef90_U4KJ97	NA	NA
UHGV-0071240_36	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0071240_36	UniRef90	UniRef90_A0A3S4LW47	NA	NA
UHGV-0071240_36	eggNOG-mapper	646413.C5IUJ7_9CAUD	NA	NA
UHGV-0071240_37	PHROG	phrog_793	head-tail adaptor	connector
UHGV-0071240_37	UniRef90	UniRef90_UPI001BE5FBE4	minor capsid protein	NA
UHGV-0071240_37	eggNOG-mapper	52979.O03932_9CAUD	Minor capsid protein	NA
UHGV-0071240_37	Pfam	PF10665	Minor capsid protein	Minor_capsid_1
UHGV-0071240_37	Structural annotation	PF10665, TIGR01563, COG5614	NA	NA
UHGV-0071240_38	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0071240_38	UniRef90	UniRef90_UPI0012BC2934	minor capsid protein	NA
UHGV-0071240_38	eggNOG-mapper	537874.B3GW08_9CAUD	Minor capsid protein	NA
UHGV-0071240_38	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0071240_38	Structural annotation	PF11114, TIGR01725	NA	NA
UHGV-0071240_39	PHROG	phrog_913	minor head protein	head and packaging
UHGV-0071240_39	UniRef90	UniRef90_UPI0012BB7B63	minor capsid protein	NA
UHGV-0071240_39	eggNOG-mapper	1121871.AUAT01000035_gene1282	Minor capsid protein from bacteriophage	NA
UHGV-0071240_39	Pfam	PF12691	Bacteriophage minor capsid protein	Minor_capsid_3
UHGV-0071240_39	Structural annotation	PF12691	NA	NA
UHGV-0071240_40	PHROG	phrog_820	major tail protein	tail
UHGV-0071240_40	UniRef90	UniRef90_UPI0012BD2CD1	phage tail protein	NA
UHGV-0071240_40	eggNOG-mapper	537874.B3GW10_9CAUD	NA	NA
UHGV-0071240_40	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0071240_41	PHROG	phrog_1061	NA	unknown function
UHGV-0071240_41	UniRef90	UniRef90_A0A380KJJ3	NA	NA
UHGV-0071240_41	eggNOG-mapper	537874.B3GW11_9CAUD	NA	NA
UHGV-0071240_41	Structural annotation	PF10666	NA	NA
UHGV-0071240_42	PHROG	phrog_706	NA	unknown function
UHGV-0071240_42	UniRef90	UniRef90_UPI001CBECD66	bacteriophage Gp15 family protein	NA
UHGV-0071240_42	eggNOG-mapper	537874.B3GW12_9CAUD	Bacteriophage Gp15 protein	NA
UHGV-0071240_42	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0071240_42	Structural annotation	PF06854	NA	NA
UHGV-0071240_43	PHROG	phrog_1686	tail length tape measure protein	tail
UHGV-0071240_43	UniRef90	UniRef90_A0A1F0AUB7	TMP_3 domain-containing protein	NA
UHGV-0071240_43	eggNOG-mapper	537874.B3GW13_9CAUD	NA	NA
UHGV-0071240_43	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0071240_43	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0071240_43	Structural annotation	PF20155	NA	NA
UHGV-0071240_44	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0071240_44	UniRef90	UniRef90_A0A1F0ZPE5	Phage tail protein	NA
UHGV-0071240_44	eggNOG-mapper	537874.B3GW14_9CAUD	Phage tail protein	NA
UHGV-0071240_44	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0071240_44	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-0071240_44	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0071240_45	PHROG	phrog_2270	NA	unknown function
UHGV-0071240_45	UniRef90	UniRef90_UPI001BDA438C	gp58-like family protein	NA
UHGV-0071240_45	eggNOG-mapper	537874.B3GW15_9CAUD	peptidoglycan catabolic process	NA
UHGV-0071240_45	Pfam	PF07902	gp58-like protein	Gp58
UHGV-0071240_45	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0071240_45	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0071240_46	UniRef90	UniRef90_F5W039	Conserved domain protein	NA
UHGV-0071240_47	PHROG	phrog_1554	NA	unknown function
UHGV-0071240_47	UniRef90	UniRef90_A0A359YI08	NA	NA
UHGV-0071240_47	eggNOG-mapper	1005705.HMPREF9967_1055	NA	NA
UHGV-0071240_47	Structural annotation	PF07104	NA	NA
UHGV-0071240_48	PHROG	phrog_4257	NA	unknown function
UHGV-0071240_48	UniRef90	UniRef90_A0A139QI86	NA	NA
UHGV-0071240_48	eggNOG-mapper	1005705.HMPREF9967_1056	NA	NA
UHGV-0071240_49	PHROG	phrog_608	holin	lysis
UHGV-0071240_49	UniRef90	UniRef90_I2NHW5	Phage holin, LL-H family	NA
UHGV-0071240_49	eggNOG-mapper	936580.HMPREF1516_0703	Bacteriophage holin of superfamily 6 (Holin_LLH)	NA
UHGV-0071240_49	Pfam	PF09682	Bacteriophage holin of superfamily 6 (Holin_LLH)	Phage_holin_6_1
UHGV-0071240_49	NCBIFam	TIGR01673.1	phage holin	NA
UHGV-0071240_50	PHROG	phrog_998	endolysin	lysis
UHGV-0071240_50	UniRef90	UniRef90_A0A2A5QFQ2	Lysin	NA
UHGV-0071240_50	eggNOG-mapper	936154.STP_1586	lysozyme activity	NA
UHGV-0071240_50	Pfam	PF05382	Bacteriophage peptidoglycan hydrolase	Amidase_5
UHGV-0071240_50	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0071240_50	Structural annotation	PF05382, PF18341, NF033742, COG0791, COG4991	NA	NA
UHGV-0071240_51	PHROG	phrog_6487	NA	unknown function
UHGV-0071240_51	UniRef90	UniRef90_A0A359YI00	NA	NA
UHGV-0071240_51	eggNOG-mapper	999425.HMPREF9186_02053	NA	NA
UHGV-0071240_51	Structural annotation	PF05587, NF040788, COG5456	NA	NA