UHGV-0071248

Genome information

Genome length 15,199 bps

CDS count 25

Completeness 99.37% (high-quality)

geNomad score 0.9521

Prediction confidence Confident

Genome information
Genome ID	UHGV-0071248
vOTU ID	vOTU-011852
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_111528
BioSample	NA
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.37% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	5
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9521
Virus hallmark genes (geNomad)	1
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	13.06
Jumbo phage	No

Genome content
Genome length	15,199 bps
GC content	29.73%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	25
CDS density	74.07%
Average CDS length	453.96 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0071248_1	eggNOG-mapper	1194526.A284_11275	NA	NA
UHGV-0071248_3	eggNOG-mapper	1194526.A284_11285	terminase small subunit	NA
UHGV-0071248_3	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0071248_4	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0071248_4	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0071248_4	UniRef90	UniRef90_A0A2T4Q148	Terminase small subunit	NA
UHGV-0071248_4	eggNOG-mapper	525378.HMPREF0793_0190	terminase small subunit	NA
UHGV-0071248_4	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0071248_4	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0071248_4	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0071248_6	PHROG	phrog_11658	NA	unknown function
UHGV-0071248_6	UniRef90	UniRef90_A0A269XI79	Pathogenicity island protein	NA
UHGV-0071248_6	eggNOG-mapper	629742.STAHO0001_1186	NA	NA
UHGV-0071248_7	PHROG	phrog_6810	spore coat protein	head and packaging
UHGV-0071248_7	eggNOG-mapper	435838.HMPREF0786_01770	sporulation resulting in formation of a cellular spore	NA
UHGV-0071248_7	COG	COG5577	Spore coat protein CotF	NA
UHGV-0071248_8	PHROG	phrog_2113	NA	unknown function
UHGV-0071248_8	UniRef90	UniRef90_A0A2K0AWC1	Pathogenicity island protein	NA
UHGV-0071248_8	eggNOG-mapper	596319.STAWA0001_2436	NA	NA
UHGV-0071248_8	Structural annotation	PF03444, TIGR04176, COG0735	NA	NA
UHGV-0071248_9	PHROG	phrog_8254	NA	unknown function
UHGV-0071248_9	UniRef90	UniRef90_A0A8B2ZJK6	Pathogenicity island protein	NA
UHGV-0071248_9	eggNOG-mapper	525378.HMPREF0793_0186	Putative mobile pathogenicity island	NA
UHGV-0071248_9	Pfam	PF16560	Putative mobile pathogenicity island	SAPI
UHGV-0071248_9	Structural annotation	PF16560	NA	NA
UHGV-0071248_10	PHROG	phrog_7134	NA	unknown function
UHGV-0071248_10	UniRef90	UniRef90_C5QLS9	Pathogenicity island protein	NA
UHGV-0071248_10	eggNOG-mapper	525378.HMPREF0793_0185	NA	NA
UHGV-0071248_10	AcrCatalog	cluster_192647	NA	NA
UHGV-0071248_10	Structural annotation	PF13601	NA	NA
UHGV-0071248_11	PHROG	phrog_7134	NA	unknown function
UHGV-0071248_11	UniRef90	UniRef90_A0A8B2ZH57	Pathogenicity island protein	NA
UHGV-0071248_11	eggNOG-mapper	1234593.ANBY01000020_gene1283	NA	NA
UHGV-0071248_11	Structural annotation	PF13601	NA	NA
UHGV-0071248_12	KOfam	K06919	K06919; putative DNA primase/helicase	NA
UHGV-0071248_12	PHROG	phrog_864	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-0071248_12	UniRef90	UniRef90_A0A2H4JBE3	Putative DNA primase/helicase	NA
UHGV-0071248_12	eggNOG-mapper	279808.SH2093	Phage plasmid primase, P4 family	NA
UHGV-0071248_12	Pfam	PF08706	D5 N terminal like	D5_N
UHGV-0071248_12	Pfam	PF19263	NA	DUF5906
UHGV-0071248_12	Pfam	PF03288	Poxvirus D5 protein-like	Pox_D5
UHGV-0071248_12	NCBIFam	TIGR01613.1	phage/plasmid primase, P4 family	NA
UHGV-0071248_12	COG	COG3378	DNA primase, phage- or plasmid-associated	NA
UHGV-0071248_12	Structural annotation	PF05272, PF02257, MF_01625, TIGR01613, COG3378	NA	NA
UHGV-0071248_13	eggNOG-mapper	279808.SH2093	Phage plasmid primase, P4 family	NA
UHGV-0071248_13	COG	COG3378	DNA primase, phage- or plasmid-associated	NA
UHGV-0071248_14	PHROG	phrog_695	DNA polymerase/primase	DNA, RNA and nucleotide metabolism
UHGV-0071248_14	UniRef90	UniRef90_A0A897IKM3	Primase alpha helix C-terminal domain-containing protein	NA
UHGV-0071248_14	eggNOG-mapper	1234593.ANBY01000020_gene1285	Primase C terminal 1 (PriCT-1)	NA
UHGV-0071248_14	Pfam	PF08708	Primase C terminal 1 (PriCT-1)	PriCT_1
UHGV-0071248_14	COG	COG5545	Predicted P-loop ATPase and inactivated derivatives	NA
UHGV-0071248_14	Structural annotation	PF08708, NF040562	NA	NA
UHGV-0071248_16	PHROG	phrog_1796	NA	unknown function
UHGV-0071248_16	UniRef90	UniRef90_G5JFZ5	Pathogenicity island protein	NA
UHGV-0071248_16	eggNOG-mapper	1229783.C273_09292	NA	NA
UHGV-0071248_17	PHROG	phrog_17110	NA	unknown function
UHGV-0071248_18	PHROG	phrog_534	DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0071248_18	UniRef90	UniRef90_A0A269XI69	Pathogenicity island protein	NA
UHGV-0071248_18	eggNOG-mapper	596319.STAWA0001_2446	NA	NA
UHGV-0071248_18	Structural annotation	PF20063, TIGR01764, COG3311	NA	NA
UHGV-0071248_19	UniRef90	UniRef90_A0A2T4Q130	DNA-binding phage protein	NA
UHGV-0071248_19	eggNOG-mapper	218495.SUB0228	TRANSCRIPTIONal	NA
UHGV-0071248_19	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0071248_19	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0071248_20	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0071248_20	UniRef90	UniRef90_A0A8B2ZEM9	Transcriptional regulator	NA
UHGV-0071248_20	eggNOG-mapper	170187.SP_1130	Helix-turn-helix	NA
UHGV-0071248_20	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0071248_20	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0071248_21	UniRef90	UniRef90_Q4ZCB8	ORF069	NA
UHGV-0071248_21	eggNOG-mapper	435838.HMPREF0786_01759	NA	NA
UHGV-0071248_22	PHROG	phrog_10226	NA	unknown function
UHGV-0071248_22	eggNOG-mapper	416870.llmg_2265	NA	NA
UHGV-0071248_22	Structural annotation	COG4127	NA	NA
UHGV-0071248_24	KOfam	K14059	int; integrase	NA
UHGV-0071248_24	PHROG	phrog_1	integrase	integration and excision
UHGV-0071248_24	UniRef90	UniRef90_A0A8B2ZH46	Phage integrase	NA
UHGV-0071248_24	eggNOG-mapper	596319.STAWA0001_2449	Phage integrase family	NA
UHGV-0071248_24	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0071248_24	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0071248_24	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0071248_25	KOfam	K02963	RP-S18, MRPS18, rpsR; small subunit ribosomal protein S18	NA
UHGV-0071248_25	UniRef90	UniRef90_Q3EN84	30S ribosomal protein S18	NA
UHGV-0071248_25	eggNOG-mapper	1194526.A284_11375	Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit	NA
UHGV-0071248_25	Pfam	PF01084	Ribosomal protein S18	Ribosomal_S18
UHGV-0071248_25	NCBIFam	TIGR00165.1	30S ribosomal protein S18	NA
UHGV-0071248_25	COG	COG0238	Ribosomal protein S18	NA