UHGV-0071349

Genome information

Genome length 43,521 bps

CDS count 75

Completeness 99.69% (high-quality)

geNomad score 0.9792

Prediction confidence Confident

Genome information
Genome ID	UHGV-0071349
vOTU ID	vOTU-010420
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_125329
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.69% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9792
Virus hallmark genes (geNomad)	13
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	37.6
Jumbo phage	No

Genome content
Genome length	43,521 bps
GC content	47.27%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	75
CDS density	88.59%
Average CDS length	517.56 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0071349_1	KOfam	K14059	int; integrase	NA
UHGV-0071349_1	PHROG	phrog_1	integrase	integration and excision
UHGV-0071349_1	UniRef90	UniRef90_UPI00164C6C3A	site-specific integrase	NA
UHGV-0071349_1	eggNOG-mapper	1280698.AUJS01000007_gene999	Phage integrase family	NA
UHGV-0071349_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0071349_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0071349_1	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0071349_2	KOfam	K07448	mrr; restriction system protein	NA
UHGV-0071349_2	PHROG	phrog_19856	NA	unknown function
UHGV-0071349_2	UniRef90	UniRef90_A0A2Z4Q9W7	Restriction endonuclease	NA
UHGV-0071349_2	eggNOG-mapper	1235790.C805_00010	Restriction endonuclease	NA
UHGV-0071349_2	PADLOC	ZorD1_00005	SWI2/SNF2 helicase, Mrr-like nuclease	Zorya
UHGV-0071349_2	Pfam	PF04471	Restriction endonuclease	Mrr_cat
UHGV-0071349_2	COG	COG1787	Endonuclease, HJR/Mrr/RecB family	NA
UHGV-0071349_3	UniRef90	UniRef90_A0A3D5TFB0	HTH cro/C1-type domain-containing protein	NA
UHGV-0071349_3	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0071349_3	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0071349_3	Structural annotation	PF13560, MF_00535, NF041951, COG1476	NA	NA
UHGV-0071349_4	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-0071349_4	UniRef90	UniRef90_A0A416SLU4	XRE family transcriptional regulator	NA
UHGV-0071349_4	eggNOG-mapper	1235798.C817_00620	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0071349_4	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0071349_4	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0071349_4	Structural annotation	PF01381, MF_00535, NF041951, COG3655	NA	NA
UHGV-0071349_5	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0071349_5	UniRef90	UniRef90_A0A412ELD4	XRE family transcriptional regulator	NA
UHGV-0071349_5	eggNOG-mapper	665950.HMPREF1025_01418	Helix-turn-helix XRE-family like proteins	NA
UHGV-0071349_5	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0071349_5	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0071349_5	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0071349_6	Pfam	PF13455	Meiotically up-regulated gene 113	MUG113
UHGV-0071349_6	Structural annotation	PF10544	NA	NA
UHGV-0071349_8	Pfam	PF02954	Bacterial regulatory protein, Fis family	HTH_8
UHGV-0071349_9	PHROG	phrog_7024	NA	unknown function
UHGV-0071349_9	eggNOG-mapper	693746.OBV_41700	NA	NA
UHGV-0071349_10	KOfam	K08309	slt; soluble lytic murein transglycosylase [EC:4.2.2.-]	NA
UHGV-0071349_10	PHROG	phrog_19890	NA	unknown function
UHGV-0071349_10	UniRef90	UniRef90_A0A1C6KI68	Invasion protein IagB	NA
UHGV-0071349_10	eggNOG-mapper	742741.HMPREF9475_00405	Transglycosylase SLT domain	NA
UHGV-0071349_10	Pfam	PF01464	Transglycosylase SLT domain	SLT
UHGV-0071349_10	COG	COG0741	Soluble lytic murein transglycosylase or regulatory protein s ( may contain LysM/invasin domain)	NA
UHGV-0071349_10	Structural annotation	PF01464, MF_01616, NF008670, COG0741	NA	NA
UHGV-0071349_13	PHROG	phrog_674	NA	unknown function
UHGV-0071349_13	UniRef90	UniRef90_A0A3A9FIT5	NA	NA
UHGV-0071349_13	eggNOG-mapper	411460.RUMTOR_02065	NA	NA
UHGV-0071349_13	Pfam	PF07083	NA	DUF1351
UHGV-0071349_13	Structural annotation	PF07083	NA	NA
UHGV-0071349_14	PHROG	phrog_7838	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0071349_14	UniRef90	UniRef90_A0A8D9UGW3	DNA repair protein RAD52-like protein	NA
UHGV-0071349_14	eggNOG-mapper	742767.HMPREF9456_02052	NA	NA
UHGV-0071349_14	Structural annotation	PF04098, TIGR00607, COG4380	NA	NA
UHGV-0071349_15	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0071349_15	eggNOG-mapper	411468.CLOSCI_00314	NA	NA
UHGV-0071349_15	Structural annotation	PF05772, NF007281	NA	NA
UHGV-0071349_16	PHROG	phrog_7566	NA	unknown function
UHGV-0071349_16	UniRef90	UniRef90_A0A8D9UHC0	Recombination enhancement function protein nuclease	NA
UHGV-0071349_16	eggNOG-mapper	693746.OBV_25470	NA	NA
UHGV-0071349_17	PHROG	phrog_244	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0071349_17	eggNOG-mapper	33035.JPJF01000122_gene2460	NA	NA
UHGV-0071349_18	PHROG	phrog_16304	NA	unknown function
UHGV-0071349_18	UniRef90	UniRef90_UPI000B1808B0	conserved phage C-terminal domain-containing protein	NA
UHGV-0071349_18	eggNOG-mapper	411468.CLOSCI_00311	Transcriptional regulator	NA
UHGV-0071349_18	Pfam	PF19808	NA	DUF6291
UHGV-0071349_18	Pfam	PF09524	Conserved phage C-terminus (Phg_2220_C)	Phg_2220_C
UHGV-0071349_18	NCBIFam	TIGR02220.1	phage conserved hypothetical protein, C-terminal domain	NA
UHGV-0071349_18	COG	COG1846	DNA-binding transcriptional regulator, MarR family	NA
UHGV-0071349_18	Structural annotation	PF19808	NA	NA
UHGV-0071349_19	Structural annotation	PF06257, MF_00754, TIGR02728, COG4466	NA	NA
UHGV-0071349_21	PHROG	phrog_5070	NA	unknown function
UHGV-0071349_21	UniRef90	UniRef90_A0A174CB23	Predicted acyltransferase	NA
UHGV-0071349_21	eggNOG-mapper	411470.RUMGNA_02189	Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell	NA
UHGV-0071349_21	Pfam	PF18836	YdcK Beta solenoid repeat	B_solenoid_ydck
UHGV-0071349_21	COG	COG1044	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase	NA
UHGV-0071349_23	PHROG	phrog_874	NA	unknown function
UHGV-0071349_23	UniRef90	UniRef90_A0A4P6LRJ9	ASCH domain-containing protein	NA
UHGV-0071349_23	eggNOG-mapper	411468.CLOSCI_00298	NA	NA
UHGV-0071349_23	Structural annotation	PF04266, MF_00684, NF003443, COG4405	NA	NA
UHGV-0071349_25	PHROG	phrog_2118	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0071349_25	UniRef90	UniRef90_A0A173RDU7	HNH endonuclease	NA
UHGV-0071349_25	eggNOG-mapper	1235799.C818_02668	endonuclease activity	NA
UHGV-0071349_25	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0071349_25	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0071349_25	Structural annotation	TIGR02646, COG1403	NA	NA
UHGV-0071349_26	PHROG	phrog_38832	NA	unknown function
UHGV-0071349_26	UniRef90	UniRef90_A0A415TX35	BAH domain-containing protein	NA
UHGV-0071349_26	eggNOG-mapper	397290.C810_01492	NA	NA
UHGV-0071349_28	eggNOG-mapper	1499968.TCA2_4415	NA	NA
UHGV-0071349_28	Structural annotation	PF12286	NA	NA
UHGV-0071349_29	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0071349_29	PHROG	phrog_23224	DNA methyltransferase	other
UHGV-0071349_29	UniRef90	UniRef90_A0A396PTY1	Methyltransferase	NA
UHGV-0071349_29	eggNOG-mapper	1214217.ALNF01000014_gene1390	N-4 methylation of cytosine	NA
UHGV-0071349_29	PADLOC	MTase_II_00172	Type II methyltransferase	RM
UHGV-0071349_29	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0071349_29	COG	COG0863	DNA modification methylase	NA
UHGV-0071349_29	Structural annotation	PF01555, NF010253, COG0863	NA	NA
UHGV-0071349_30	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-0071349_30	UniRef90	UniRef90_UPI001BBBA8BA	NA	NA
UHGV-0071349_30	eggNOG-mapper	665950.HMPREF1025_01405	NA	NA
UHGV-0071349_30	Pfam	PF14359	NA	DUF4406
UHGV-0071349_30	COG	COG3613	Nucleoside 2-deoxyribosyltransferase	NA
UHGV-0071349_30	Structural annotation	PF14359, MF_03036, TIGR02133, COG3613	NA	NA
UHGV-0071349_32	PHROG	phrog_599	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UHGV-0071349_32	UniRef90	UniRef90_A0A1C5RYU8	Restriction alleviation protein, Lar family	NA
UHGV-0071349_32	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0071349_32	Structural annotation	NF007260	NA	NA
UHGV-0071349_36	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0071349_36	PHROG	phrog_940	nuclease	DNA, RNA and nucleotide metabolism
UHGV-0071349_36	UniRef90	UniRef90_A0A2S0KPA3	Chromosome partitioning protein ParB	NA
UHGV-0071349_36	eggNOG-mapper	1232449.BAHV02000018_gene1534	NA	NA
UHGV-0071349_36	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-0071349_36	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0071349_36	Pfam	PF14386	NA	DUF4417
UHGV-0071349_36	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0071349_36	Structural annotation	PF14386, PF02195, TIGR00180	NA	NA
UHGV-0071349_39	PHROG	phrog_5057	NA	unknown function
UHGV-0071349_40	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0071349_40	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0071349_40	UniRef90	UniRef90_A0A416S378	PBSX family phage terminase large subunit	NA
UHGV-0071349_40	eggNOG-mapper	33035.JPJF01000106_gene3136	Terminase small subunit	NA
UHGV-0071349_40	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0071349_40	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0071349_40	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0071349_40	COG	COG1783	Phage terminase large subunit	NA
UHGV-0071349_40	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0071349_41	PHROG	phrog_533	portal protein	head and packaging
UHGV-0071349_41	UniRef90	UniRef90_A0A1C6CDM8	Phage portal protein, putative, A118 family	NA
UHGV-0071349_41	eggNOG-mapper	33035.JPJF01000106_gene3135	phage minor capsid protein	NA
UHGV-0071349_41	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0071349_42	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0071349_42	UniRef90	UniRef90_A0A1C6CDG2	Phage minor capsid protein 2	NA
UHGV-0071349_42	eggNOG-mapper	33035.JPJF01000106_gene3134	Phage minor capsid protein 2	NA
UHGV-0071349_42	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0071349_42	COG	COG2369	NA	NA
UHGV-0071349_42	Structural annotation	PF06152	NA	NA
UHGV-0071349_43	UniRef90	UniRef90_A0A417UWY7	CTP synthase	NA
UHGV-0071349_43	eggNOG-mapper	476272.RUMHYD_01766	NA	NA
UHGV-0071349_45	PHROG	phrog_21718	NA	unknown function
UHGV-0071349_45	eggNOG-mapper	1235790.C805_00058	NA	NA
UHGV-0071349_47	eggNOG-mapper	476272.RUMHYD_01770	NA	NA
UHGV-0071349_48	PHROG	phrog_20016	NA	unknown function
UHGV-0071349_48	UniRef90	UniRef90_A0A316MV88	BclA_C domain-containing protein	NA
UHGV-0071349_48	eggNOG-mapper	1226322.HMPREF1545_00077	NA	NA
UHGV-0071349_49	Structural annotation	PF00210, MF_01441, NF011597, COG1528	NA	NA
UHGV-0071349_52	UniRef90	UniRef90_UPI001C0EBA51	phage scaffolding protein	NA
UHGV-0071349_52	eggNOG-mapper	742765.HMPREF9457_02126	COG NOG36366 non supervised orthologous group	NA
UHGV-0071349_52	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0071349_53	PHROG	phrog_247	major head protein	head and packaging
UHGV-0071349_53	UniRef90	UniRef90_A0A3R6K7E9	Phage coat protein	NA
UHGV-0071349_53	eggNOG-mapper	536233.CLO_0886	NA	NA
UHGV-0071349_53	Pfam	PF20036	Major capsid protein 13-like	Gp13-like
UHGV-0071349_53	COG	COG1106	ATPase/GTPase, AAA15 family	NA
UHGV-0071349_53	Structural annotation	PF20036, MF_04113, TIGR04387, COG4653	NA	NA
UHGV-0071349_54	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0071349_54	eggNOG-mapper	476272.RUMHYD_01778	NA	NA
UHGV-0071349_55	PHROG	phrog_18218	NA	unknown function
UHGV-0071349_55	UniRef90	UniRef90_A0A8D9PGR5	Holin	NA
UHGV-0071349_55	eggNOG-mapper	411902.CLOBOL_03424	NA	NA
UHGV-0071349_55	Structural annotation	PF06946	NA	NA
UHGV-0071349_56	PHROG	phrog_3366	NA	unknown function
UHGV-0071349_56	eggNOG-mapper	476272.RUMHYD_01779	NA	NA
UHGV-0071349_56	Structural annotation	PF20536, COG5614	NA	NA
UHGV-0071349_57	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0071349_57	UniRef90	UniRef90_UPI0008B4CFF0	minor capsid protein	NA
UHGV-0071349_57	eggNOG-mapper	476272.RUMHYD_01780	NA	NA
UHGV-0071349_57	Structural annotation	PF11114	NA	NA
UHGV-0071349_58	PHROG	phrog_3266	tail completion	connector
UHGV-0071349_58	eggNOG-mapper	476272.RUMHYD_01781	NA	NA
UHGV-0071349_58	Structural annotation	PF12691	NA	NA
UHGV-0071349_59	PHROG	phrog_3099	NA	unknown function
UHGV-0071349_59	eggNOG-mapper	552396.HMPREF0863_00272	NA	NA
UHGV-0071349_59	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0071349_60	UniRef90	UniRef90_A0A412KF72	RNA polymerase subunit sigma	NA
UHGV-0071349_60	Structural annotation	PF10666	NA	NA
UHGV-0071349_61	PHROG	phrog_706	NA	unknown function
UHGV-0071349_61	UniRef90	UniRef90_C7GBZ7	Bacteriophage Gp15 protein	NA
UHGV-0071349_61	eggNOG-mapper	1235790.C805_00084	Bacteriophage Gp15 protein	NA
UHGV-0071349_61	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0071349_61	Structural annotation	PF06854	NA	NA
UHGV-0071349_62	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0071349_62	eggNOG-mapper	1280692.AUJL01000027_gene2150	phage tail tape measure protein	NA
UHGV-0071349_62	COG	COG1511	NA	NA
UHGV-0071349_62	Structural annotation	PF09486, TIGR02559	NA	NA
UHGV-0071349_63	PHROG	phrog_1194	NA	unknown function
UHGV-0071349_63	eggNOG-mapper	1120746.CCNL01000014_gene2106	NA	NA
UHGV-0071349_63	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0071349_64	PHROG	phrog_13879	NA	unknown function
UHGV-0071349_64	eggNOG-mapper	1120746.CCNL01000014_gene2107	NA	NA
UHGV-0071349_64	Structural annotation	PF14594, PF03256, NF033848, COG4379, COG5156	NA	NA
UHGV-0071349_66	PHROG	phrog_18725	NA	unknown function
UHGV-0071349_66	eggNOG-mapper	1226322.HMPREF1545_00062	NA	NA
UHGV-0071349_69	PHROG	phrog_14030	NA	unknown function
UHGV-0071349_69	UniRef90	UniRef90_A0A417IER1	PG_binding_1 domain-containing protein	NA
UHGV-0071349_69	eggNOG-mapper	1235793.C809_02691	N-Acetylmuramoyl-L-alanine amidase	NA
UHGV-0071349_69	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0071349_69	COG	COG3023	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	NA
UHGV-0071349_69	Structural annotation	PF01471, NF038080, COG3409	NA	NA
UHGV-0071349_70	eggNOG-mapper	1304866.K413DRAFT_4686	NA	NA
UHGV-0071349_71	eggNOG-mapper	742738.HMPREF9460_04058	NA	NA
UHGV-0071349_72	PHROG	phrog_2329	NA	unknown function
UHGV-0071349_72	UniRef90	UniRef90_A0A7X5CB73	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	NA
UHGV-0071349_72	eggNOG-mapper	1292035.H476_0264	NA	NA
UHGV-0071349_72	Structural annotation	PF04014, NF007312, COG2336	NA	NA
UHGV-0071349_74	eggNOG-mapper	1235802.C823_02864	NA	NA