UHGV-0071366

Genome information

Genome length 38,662 bps

CDS count 59

Completeness 67.60% (medium-quality)

geNomad score 0.9771

Prediction confidence Confident

Genome information
Genome ID	UHGV-0071366
vOTU ID	vOTU-022686
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_125189
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	67.60% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	10
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9771
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	25.79
Jumbo phage	No

Genome content
Genome length	38,662 bps
GC content	39.42%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	59
CDS density	85.14%
Average CDS length	561.51 bps
tRNA count	6
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0071366_1	eggNOG-mapper	397290.C810_01351	NA	NA
UHGV-0071366_1	Structural annotation	COG5302	NA	NA
UHGV-0071366_3	eggNOG-mapper	1304866.K413DRAFT_4686	NA	NA
UHGV-0071366_4	UniRef90	UniRef90_A0A7G9WJD7	Helix-turn-helix transcriptional regulator	NA
UHGV-0071366_4	eggNOG-mapper	742738.HMPREF9460_00886	NA	NA
UHGV-0071366_4	Structural annotation	PF00847, TIGR03826	NA	NA
UHGV-0071366_5	UniRef90	UniRef90_A0A8D9UIS5	DNA-packaging protein	NA
UHGV-0071366_5	eggNOG-mapper	658655.HMPREF0988_00895	NA	NA
UHGV-0071366_6	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0071366_6	PHROG	phrog_589	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0071366_6	UniRef90	UniRef90_UPI001D1201FC	HNH endonuclease	NA
UHGV-0071366_6	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0071366_6	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0071366_6	Structural annotation	PF14279	NA	NA
UHGV-0071366_7	eggNOG-mapper	1235793.C809_00537	NA	NA
UHGV-0071366_9	Structural annotation	PF20556	NA	NA
UHGV-0071366_13	UniRef90	UniRef90_A0A8D9PG29	Acetyl-coA carboxylase zinc finger domain protein	NA
UHGV-0071366_14	UniRef90	UniRef90_UPI001D08650D	Com family DNA-binding transcriptional regulator	NA
UHGV-0071366_14	Pfam	PF10122	NA	Mu-like_Com
UHGV-0071366_14	Structural annotation	PF10122, COG4416	NA	NA
UHGV-0071366_15	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0071366_15	UniRef90	UniRef90_A0A352SH30	Terminase_6C domain-containing protein	NA
UHGV-0071366_15	eggNOG-mapper	397290.C810_01390	chromosome segregation	NA
UHGV-0071366_15	Pfam	PF17289	Terminase RNaseH-like domain	Terminase_6C
UHGV-0071366_15	COG	COG5410	NA	NA
UHGV-0071366_15	Structural annotation	PF17289, PF04466, MF_04147, NF033889, COG5410, COG5362	NA	NA
UHGV-0071366_16	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0071366_16	UniRef90	UniRef90_A0A352SH29	RNA polymerase subunit sigma-70 (Fragment)	NA
UHGV-0071366_16	eggNOG-mapper	411459.RUMOBE_01043	NA	NA
UHGV-0071366_16	Structural annotation	PF07374, MF_00674, NF008895, COG1191	NA	NA
UHGV-0071366_17	Structural annotation	PF10122, COG4416	NA	NA
UHGV-0071366_18	PHROG	phrog_64	portal protein	head and packaging
UHGV-0071366_18	UniRef90	UniRef90_UPI001D0761B7	phage portal protein	NA
UHGV-0071366_18	eggNOG-mapper	1298920.KI911353_gene2663	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0071366_18	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0071366_18	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0071366_19	UniRef90	UniRef90_R6C0B6	Phage capsid scaffolding protein	NA
UHGV-0071366_20	PHROG	phrog_909	major head protein	head and packaging
UHGV-0071366_20	UniRef90	UniRef90_R7BGI8	Phage major capsid protein	NA
UHGV-0071366_20	eggNOG-mapper	1347368.HG964404_gene4994	NA	NA
UHGV-0071366_21	PHROG	phrog_29	major head protein	head and packaging
UHGV-0071366_21	UniRef90	UniRef90_A0A173UF26	Phage major capsid protein E	NA
UHGV-0071366_21	eggNOG-mapper	756499.Desde_1083	Phage major capsid protein E	NA
UHGV-0071366_21	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-0071366_21	Structural annotation	PF03864, MF_04133, NF041162, COG4653	NA	NA
UHGV-0071366_22	Structural annotation	PF21169	NA	NA
UHGV-0071366_23	eggNOG-mapper	397290.C810_01402	NA	NA
UHGV-0071366_24	PHROG	phrog_4105	NA	unknown function
UHGV-0071366_24	eggNOG-mapper	411459.RUMOBE_00911	NA	NA
UHGV-0071366_25	PHROG	phrog_1129	holin	lysis
UHGV-0071366_25	UniRef90	UniRef90_A0A8D9UII9	Holin	NA
UHGV-0071366_25	eggNOG-mapper	411461.DORFOR_00721	NA	NA
UHGV-0071366_25	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0071366_25	Structural annotation	PF06946	NA	NA
UHGV-0071366_26	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0071366_27	UniRef90	UniRef90_UPI001BBD4500	HK97 gp10 family phage protein	NA
UHGV-0071366_27	eggNOG-mapper	397290.C810_01411	NA	NA
UHGV-0071366_27	Structural annotation	PF17395, TIGR01725	NA	NA
UHGV-0071366_28	Structural annotation	PF05657	NA	NA
UHGV-0071366_29	eggNOG-mapper	476272.RUMHYD_01968	NA	NA
UHGV-0071366_29	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-0071366_30	PHROG	phrog_36112	NA	unknown function
UHGV-0071366_30	eggNOG-mapper	1298920.KI911353_gene2651	NA	NA
UHGV-0071366_30	Structural annotation	PF16478	NA	NA
UHGV-0071366_32	KOfam	K07273	acm; lysozyme	NA
UHGV-0071366_32	PHROG	phrog_291	endolysin	lysis
UHGV-0071366_32	UniRef90	UniRef90_UPI001D05F2B6	peptidoglycan-binding protein	NA
UHGV-0071366_32	eggNOG-mapper	1235800.C819_00458	Glycosyl hydrolases family 25	NA
UHGV-0071366_32	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0071366_32	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0071366_32	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0071366_32	Structural annotation	PF01183, PF01471, MF_02227, NF007360, COG3757, COG3409	NA	NA
UHGV-0071366_33	PHROG	phrog_28918	NA	unknown function
UHGV-0071366_33	UniRef90	UniRef90_A0A2H4J4V9	Putative Tmp	NA
UHGV-0071366_33	eggNOG-mapper	1298920.KI911353_gene2649	tape measure	NA
UHGV-0071366_33	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0071366_34	PHROG	phrog_1194	NA	unknown function
UHGV-0071366_34	Pfam	PF20458	NA	DUF6711
UHGV-0071366_34	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0071366_35	PHROG	phrog_18190	NA	unknown function
UHGV-0071366_35	UniRef90	UniRef90_UPI001D0767E1	gp58-like family protein	NA
UHGV-0071366_35	eggNOG-mapper	397290.C810_01435	NA	NA
UHGV-0071366_38	PHROG	phrog_17196	kinase	other
UHGV-0071366_38	eggNOG-mapper	1235790.C805_00090	NA	NA
UHGV-0071366_38	Structural annotation	PF13619	NA	NA
UHGV-0071366_39	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0071366_39	UniRef90	UniRef90_UPI001D074CCD	helix-turn-helix domain-containing protein	NA
UHGV-0071366_39	eggNOG-mapper	411463.EUBVEN_01507	NA	NA
UHGV-0071366_39	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0071366_39	Structural annotation	PF13443, PF00717, MF_00015, NF041951, TIGR02228, COG3655	NA	NA
UHGV-0071366_41	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0071366_41	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0071366_41	UniRef90	UniRef90_UPI001C01C52A	helix-turn-helix domain-containing protein	NA
UHGV-0071366_41	eggNOG-mapper	903814.ELI_1263	Helix-turn-helix domain	NA
UHGV-0071366_41	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0071366_41	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0071366_41	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0071366_42	Structural annotation	PF12729	NA	NA
UHGV-0071366_44	UniRef90	UniRef90_UPI0015934173	helix-turn-helix domain-containing protein	NA
UHGV-0071366_45	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0071366_45	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0071366_45	UniRef90	UniRef90_UPI00136F1AFB	phage antirepressor KilAC domain-containing protein	NA
UHGV-0071366_45	eggNOG-mapper	290402.Cbei_3198	Phage antirepressor protein	NA
UHGV-0071366_45	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0071366_45	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0071366_45	COG	COG3617	Prophage antirepressor	NA
UHGV-0071366_45	Structural annotation	PF03374, PF02498, TIGR02681, COG3645	NA	NA
UHGV-0071366_46	AcrCatalog	cluster_63593	NA	NA
UHGV-0071366_47	PHROG	phrog_19890	NA	unknown function
UHGV-0071366_47	UniRef90	UniRef90_A0A352SFF8	SLT domain-containing protein	NA
UHGV-0071366_47	eggNOG-mapper	1410650.JHWL01000003_gene2854	lytic transglycosylase activity	NA
UHGV-0071366_47	Pfam	PF01464	Transglycosylase SLT domain	SLT
UHGV-0071366_47	COG	COG0741	Soluble lytic murein transglycosylase or regulatory protein s ( may contain LysM/invasin domain)	NA
UHGV-0071366_47	Structural annotation	PF01464, MF_01381, NF011856, COG0741	NA	NA
UHGV-0071366_48	PHROG	phrog_22292	NA	unknown function
UHGV-0071366_51	UniRef90	UniRef90_UPI001D091C1C	sporulation initiation factor Spo0A C-terminal domain-containing protein	NA
UHGV-0071366_51	Pfam	PF08769	Sporulation initiation factor Spo0A C terminal	Spo0A_C
UHGV-0071366_51	COG	COG0745	DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain	NA
UHGV-0071366_51	Structural annotation	PF08769, TIGR02875	NA	NA
UHGV-0071366_52	KOfam	K03546	sbcC, rad50; DNA repair protein SbcC/Rad50	NA
UHGV-0071366_52	PHROG	phrog_77	SbcC-like subunit of palindrome specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0071366_52	UniRef90	UniRef90_A0A412RQV0	AAA_23 domain-containing protein	NA
UHGV-0071366_52	eggNOG-mapper	397290.C810_01461	nuclear chromosome segregation	NA
UHGV-0071366_52	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0071366_52	Structural annotation	PF02463, MF_00449, NF041034, COG0419	NA	NA
UHGV-0071366_54	Structural annotation	PF02237, MF_00257, NF037951, COG4013	NA	NA
UHGV-0071366_55	Structural annotation	PF13973, PF04319, PF08962	NA	NA
UHGV-0071366_56	PHROG	phrog_2760	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0071366_56	UniRef90	UniRef90_UPI001D08E6D4	phage recombination protein Bet	NA
UHGV-0071366_56	eggNOG-mapper	397290.C810_01467	Phage recombination protein Bet	NA
UHGV-0071366_56	Pfam	PF03837	RecT family	RecT
UHGV-0071366_56	NCBIFam	TIGR01913.1	phage recombination protein Bet	NA
UHGV-0071366_56	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0071366_56	Structural annotation	PF03837, TIGR01913, COG3723	NA	NA
UHGV-0071366_57	PHROG	phrog_25456	NA	unknown function
UHGV-0071366_58	KOfam	K06167	phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55]	NA
UHGV-0071366_58	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-0071366_58	UniRef90	UniRef90_A0A352SIH6	Lactamase_B domain-containing protein	NA
UHGV-0071366_58	eggNOG-mapper	397290.C810_01486	May be involved in the transport of PQQ or its precursor to the periplasm	NA
UHGV-0071366_58	Pfam	PF00753	Metallo-beta-lactamase superfamily	Lactamase_B
UHGV-0071366_58	dbAPIS	APIS058	NA	NA
UHGV-0071366_58	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-0071366_58	Structural annotation	PF02112, MF_01818, NF041851, COG1234	NA	NA
UHGV-0071366_59	PHROG	phrog_954	DNA methyltransferase	other
UHGV-0071366_59	UniRef90	UniRef90_A0A352SIH5	SAM-dependent methyltransferase	NA
UHGV-0071366_59	eggNOG-mapper	1027292.HMPREF9372_3378	Methyltransferase domain	NA
UHGV-0071366_59	PADLOC	MTase_II_00074	Type II methyltransferase	RM
UHGV-0071366_59	Pfam	PF08241	Methyltransferase domain	Methyltransf_11
UHGV-0071366_59	COG	COG0500	SAM-dependent methyltransferase	NA
UHGV-0071366_59	Structural annotation	PF05148, MF_03044, NF033398, COG1041	NA	NA