UHGV-0071487

Genome information

Genome length 63,112 bps

CDS count 104

Completeness 99.90% (high-quality)

geNomad score 0.9758

Prediction confidence Confident

Genome information
Genome ID	UHGV-0071487
vOTU ID	vOTU-008672
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_115421
BioSample	NA
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	20
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9758
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	29.42
Jumbo phage	No

Genome content
Genome length	63,112 bps
GC content	57.86%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	104
CDS density	88.95%
Average CDS length	544.41 bps
tRNA count	3
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0071487_2	KOfam	K14059	int; integrase	NA
UHGV-0071487_2	PHROG	phrog_1	integrase	integration and excision
UHGV-0071487_2	UniRef90	UniRef90_A0A0A7I2Q0	Tyr recombinase domain-containing protein	NA
UHGV-0071487_2	eggNOG-mapper	1437603.BMON_0921	Phage integrase family	NA
UHGV-0071487_2	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0071487_2	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0071487_2	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0071487_2	Structural annotation	PF00589, PF13102, MF_01808, TIGR02225, COG4974	NA	NA
UHGV-0071487_3	UniRef90	UniRef90_A7A599	Outer membrane insertion signal domain protein	NA
UHGV-0071487_3	eggNOG-mapper	1435051.BMOU_0750	NA	NA
UHGV-0071487_4	PHROG	phrog_1281	NA	unknown function
UHGV-0071487_4	UniRef90	UniRef90_A0A3D1TN06	NA	NA
UHGV-0071487_4	eggNOG-mapper	1265503.KB905160_gene2423	NA	NA
UHGV-0071487_4	Pfam	PF13274	Antitoxin SocA-like, Panacea domain	SocA_Panacea
UHGV-0071487_4	COG	COG3620	Predicted transcriptional regulator, contains an XRE-type HTH domain (archaeal members contain CBS pair)	NA
UHGV-0071487_6	eggNOG-mapper	1394176.AWUO01000014_gene690	NA	NA
UHGV-0071487_7	eggNOG-mapper	78346.BRUM_0425	NA	NA
UHGV-0071487_8	PHROG	phrog_87	metallo-protease	other
UHGV-0071487_8	UniRef90	UniRef90_A7A2N7	Peptidase_M78 domain-containing protein	NA
UHGV-0071487_8	eggNOG-mapper	78346.BRUM_0422	NA	NA
UHGV-0071487_8	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0071487_8	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0071487_9	PHROG	phrog_16278	HTH DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0071487_9	UniRef90	UniRef90_A0A1X2ZGN8	DNA-binding protein	NA
UHGV-0071487_9	eggNOG-mapper	1437605.BACT_1107	NA	NA
UHGV-0071487_9	Structural annotation	PF13560, MF_00535, NF041677, COG3655	NA	NA
UHGV-0071487_10	UniRef90	UniRef90_A0A0A7I2H4	XRE family transcriptional regulator	NA
UHGV-0071487_10	eggNOG-mapper	1151126.AQYI01000007_gene1567	NA	NA
UHGV-0071487_13	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0071487_13	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0071487_13	UniRef90	UniRef90_A0A6N2RIQ2	Phage antirepressor protein KilAC domain protein	NA
UHGV-0071487_13	eggNOG-mapper	398513.BBNG_00818	BRO family, N-terminal domain	NA
UHGV-0071487_13	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0071487_13	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0071487_13	COG	COG3617	Prophage antirepressor	NA
UHGV-0071487_13	Structural annotation	PF03374, PF02498, COG3645, COG3617	NA	NA
UHGV-0071487_14	Structural annotation	PF20063, NF033787, COG3311	NA	NA
UHGV-0071487_17	eggNOG-mapper	78346.BRUM_0417	NA	NA
UHGV-0071487_17	Structural annotation	PF12989	NA	NA
UHGV-0071487_18	PHROG	phrog_954	DNA methyltransferase	other
UHGV-0071487_18	UniRef90	UniRef90_A0A2R4G2L6	Class I SAM-dependent methyltransferase	NA
UHGV-0071487_18	eggNOG-mapper	104623.Ser39006_02605	methyltransferase	NA
UHGV-0071487_18	PADLOC	MTase_II_00074	Type II methyltransferase	RM
UHGV-0071487_18	Pfam	PF08241	Methyltransferase domain	Methyltransf_11
UHGV-0071487_18	COG	COG0500	SAM-dependent methyltransferase	NA
UHGV-0071487_18	Structural annotation	PF01170, MF_01057, TIGR00446, COG4123	NA	NA
UHGV-0071487_19	eggNOG-mapper	398513.BBNG_00824	NA	NA
UHGV-0071487_20	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0071487_20	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0071487_20	UniRef90	UniRef90_A7A2L6	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0071487_20	eggNOG-mapper	1435051.BMOU_0741	DNA (cytosine-5-)-methyltransferase activity	NA
UHGV-0071487_20	PADLOC	MTase_II_00058	Type II methyltransferase	RM
UHGV-0071487_20	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0071487_20	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0071487_20	Structural annotation	PF00145, MF_00351, TIGR00675, COG0270	NA	NA
UHGV-0071487_21	UniRef90	UniRef90_UPI001F221D87	DNA cytosine methyltransferase	NA
UHGV-0071487_21	eggNOG-mapper	1435051.BMOU_0801	C-5 cytosine-specific DNA methylase	NA
UHGV-0071487_21	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0071487_22	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0071487_22	PHROG	phrog_16528	DNA methyltransferase	other
UHGV-0071487_22	UniRef90	UniRef90_A0A6A2RM18	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0071487_22	eggNOG-mapper	1435051.BMOU_0800	DNA (cytosine-5-)-methyltransferase activity	NA
UHGV-0071487_22	PADLOC	MTase_II_00058	Type II methyltransferase	RM
UHGV-0071487_22	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0071487_22	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0071487_23	UniRef90	UniRef90_A0A6B8LJU6	Hypoyhetical protein	NA
UHGV-0071487_25	UniRef90	UniRef90_UPI0015F34A86	winged helix-turn-helix transcriptional regulator	NA
UHGV-0071487_25	Pfam	PF13412	Winged helix-turn-helix DNA-binding	HTH_24
UHGV-0071487_25	Structural annotation	PF08220, PF01047, MF_00732, NF008273, COG1654	NA	NA
UHGV-0071487_30	eggNOG-mapper	78346.BRUM_0411	NA	NA
UHGV-0071487_31	PHROG	phrog_2780	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0071487_31	UniRef90	UniRef90_A0A413KAE1	Phage recombination protein Bet (Fragment)	NA
UHGV-0071487_31	eggNOG-mapper	1435051.BMOU_0794	RecT family	NA
UHGV-0071487_31	Pfam	PF03837	RecT family	RecT
UHGV-0071487_31	NCBIFam	TIGR01913.1	phage recombination protein Bet	NA
UHGV-0071487_31	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0071487_31	Structural annotation	PF03837, PF16784, TIGR01913, COG3723	NA	NA
UHGV-0071487_32	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0071487_32	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0071487_32	UniRef90	UniRef90_A0A6N2RIP4	Single-stranded DNA-binding protein	NA
UHGV-0071487_32	eggNOG-mapper	78346.BRUM_0409	Single-strand binding protein family	NA
UHGV-0071487_32	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0071487_32	NCBIFam	NF005851.0	single-stranded DNA-binding protein	NA
UHGV-0071487_32	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0071487_32	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0071487_32	Structural annotation	PF00436, MF_00984, NF005851, COG2965	NA	NA
UHGV-0071487_33	UniRef90	UniRef90_A0A6L4V2N7	Ferredoxin	NA
UHGV-0071487_34	PHROG	phrog_244	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0071487_34	UniRef90	UniRef90_A0A1X2ZJJ9	NA	NA
UHGV-0071487_34	eggNOG-mapper	1193128.A200_07809	NA	NA
UHGV-0071487_34	Structural annotation	PF13588, COG1591	NA	NA
UHGV-0071487_35	UniRef90	UniRef90_UPI001076266F	transposase	NA
UHGV-0071487_35	eggNOG-mapper	78346.BRUM_0407	NA	NA
UHGV-0071487_35	Structural annotation	PF01815	NA	NA
UHGV-0071487_37	UniRef90	UniRef90_A0A2K9BZP4	GTP-binding protein	NA
UHGV-0071487_37	Structural annotation	PF13783, COG5515	NA	NA
UHGV-0071487_38	UniRef90	UniRef90_A0A267WJ25	Antitoxin	NA
UHGV-0071487_38	eggNOG-mapper	78346.BRUM_0403	NA	NA
UHGV-0071487_40	PHROG	phrog_236	nucleotide kinase	other
UHGV-0071487_40	UniRef90	UniRef90_UPI001F0CDE20	NA	NA
UHGV-0071487_40	eggNOG-mapper	1680.BADO_1253	NA	NA
UHGV-0071487_40	Pfam	PF11753	NA	DUF3310
UHGV-0071487_41	UniRef90	UniRef90_A0A0A7I2M5	Peptidase U32	NA
UHGV-0071487_47	PHROG	phrog_21331	NA	unknown function
UHGV-0071487_47	UniRef90	UniRef90_A0A0A7I3Q2	Peptidase	NA
UHGV-0071487_48	PHROG	phrog_17296	NA	unknown function
UHGV-0071487_48	UniRef90	UniRef90_A0A516KTZ2	ADP-ribosyltransferase	NA
UHGV-0071487_48	eggNOG-mapper	1680.BADO_1261	NA	NA
UHGV-0071487_48	Structural annotation	PF12120, NF033144	NA	NA
UHGV-0071487_50	UniRef90	UniRef90_UPI001076266F	transposase	NA
UHGV-0071487_50	eggNOG-mapper	1435051.BMOU_0784	NA	NA
UHGV-0071487_50	Structural annotation	PF01815	NA	NA
UHGV-0071487_53	eggNOG-mapper	78346.BRUM_0407	NA	NA
UHGV-0071487_54	eggNOG-mapper	1394176.AWUO01000011_gene389	NA	NA
UHGV-0071487_54	Structural annotation	PF06319, NF033832, COG5321	NA	NA
UHGV-0071487_56	UniRef90	UniRef90_UPI001CFBB2F5	zinc ribbon domain-containing protein	NA
UHGV-0071487_57	PHROG	phrog_2447	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0071487_57	eggNOG-mapper	1435051.BMOU_0785	NA	NA
UHGV-0071487_57	Structural annotation	PF09681, TIGR01714	NA	NA
UHGV-0071487_59	PHROG	phrog_908	NA	unknown function
UHGV-0071487_59	eggNOG-mapper	1688.BCUN_0617	NA	NA
UHGV-0071487_59	Structural annotation	TIGR02043	NA	NA
UHGV-0071487_62	PHROG	phrog_547	phosphoesterase	other
UHGV-0071487_62	UniRef90	UniRef90_A0A1X3A1P1	Metallophos domain-containing protein	NA
UHGV-0071487_62	eggNOG-mapper	1680.BADO_0635	phosphoesterase or phosphohydrolase	NA
UHGV-0071487_62	Pfam	PF00149	Calcineurin-like phosphoesterase	Metallophos
UHGV-0071487_62	COG	COG4186	NA	NA
UHGV-0071487_62	Structural annotation	PF12850, MF_00575, NF003743, COG4186	NA	NA
UHGV-0071487_64	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0071487_64	PHROG	phrog_1	integrase	integration and excision
UHGV-0071487_64	UniRef90	UniRef90_A0A564VRE7	Tyrosine recombinase XerC	NA
UHGV-0071487_64	eggNOG-mapper	1394176.AWUO01000014_gene645	Belongs to the 'phage' integrase family	NA
UHGV-0071487_64	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0071487_64	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0071487_64	Structural annotation	PF00589, PF02899, MF_01808, TIGR02225, COG4974	NA	NA
UHGV-0071487_65	PHROG	phrog_15934	NA	unknown function
UHGV-0071487_65	UniRef90	UniRef90_UPI00189B765D	tyrosine-type recombinase/integrase	NA
UHGV-0071487_65	eggNOG-mapper	1394176.AWUO01000014_gene644	NA	NA
UHGV-0071487_68	KOfam	K02338	dnaN; DNA polymerase III subunit beta [EC:2.7.7.7]	NA
UHGV-0071487_68	PHROG	phrog_947	DNA polymerase processivity factor	DNA, RNA and nucleotide metabolism
UHGV-0071487_68	COG	COG0592	DNA polymerase III sliding clamp (beta) subunit, PCNA homolog	NA
UHGV-0071487_71	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0071487_71	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-0071487_71	UniRef90	UniRef90_A0A0E2ZUW5	Transcriptional regulator	NA
UHGV-0071487_71	eggNOG-mapper	762211.BSTEL_0947	Helix-turn-helix domain	NA
UHGV-0071487_71	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0071487_73	PHROG	phrog_1271	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0071487_73	UniRef90	UniRef90_A0A5M9ZVQ2	NA	NA
UHGV-0071487_73	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0071487_73	Structural annotation	PF01844, PF09889, MF_00649	NA	NA
UHGV-0071487_74	PHROG	phrog_226	minor tail protein	tail
UHGV-0071487_75	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0071487_75	UniRef90	UniRef90_UPI001F0F6B49	phage terminase family protein	NA
UHGV-0071487_75	eggNOG-mapper	1692.BMAGN_1441	Terminase	NA
UHGV-0071487_75	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0071487_75	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0071487_75	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0071487_76	PHROG	phrog_104	portal protein	head and packaging
UHGV-0071487_76	UniRef90	UniRef90_A0A413KB23	Phage portal protein	NA
UHGV-0071487_76	eggNOG-mapper	1692.BMAGN_1442	NA	NA
UHGV-0071487_76	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0071487_77	PHROG	phrog_36668	NA	unknown function
UHGV-0071487_77	UniRef90	UniRef90_A0A7Y0EP42	NA	NA
UHGV-0071487_77	eggNOG-mapper	1692.BMAGN_1443	NA	NA
UHGV-0071487_77	Structural annotation	PF06152, TIGR01641, COG2369	NA	NA
UHGV-0071487_79	PHROG	phrog_3583	head decoration	head and packaging
UHGV-0071487_79	UniRef90	UniRef90_A0A087B687	Bacteriophage lambda head decoration like-protein	NA
UHGV-0071487_79	eggNOG-mapper	1692.BMAGN_1445	NA	NA
UHGV-0071487_79	Structural annotation	PF02924	NA	NA
UHGV-0071487_80	PHROG	phrog_29	major head protein	head and packaging
UHGV-0071487_80	UniRef90	UniRef90_A0A413KB20	Major capsid protein E	NA
UHGV-0071487_80	eggNOG-mapper	1692.BMAGN_1446	Phage major capsid protein E	NA
UHGV-0071487_80	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-0071487_80	Structural annotation	PF03864, MF_04133, TIGR04387, COG4653	NA	NA
UHGV-0071487_81	PHROG	phrog_36776	NA	unknown function
UHGV-0071487_81	eggNOG-mapper	1692.BMAGN_1447	NA	NA
UHGV-0071487_82	PHROG	phrog_25853	NA	unknown function
UHGV-0071487_82	UniRef90	UniRef90_A0A1X2Z7Z3	Thiamine biosynthesis protein ThiS	NA
UHGV-0071487_82	eggNOG-mapper	1692.BMAGN_1448	NA	NA
UHGV-0071487_82	Structural annotation	PF12206, COG5614	NA	NA
UHGV-0071487_83	PHROG	phrog_32608	NA	unknown function
UHGV-0071487_83	Structural annotation	PF17395	NA	NA
UHGV-0071487_84	eggNOG-mapper	1688.BCUN_1867	NA	NA
UHGV-0071487_84	Structural annotation	PF12691	NA	NA
UHGV-0071487_85	PHROG	phrog_117	major tail protein	tail
UHGV-0071487_85	UniRef90	UniRef90_UPI00168A9563	Ig-like domain-containing protein	NA
UHGV-0071487_85	eggNOG-mapper	1688.BCUN_1866	NA	NA
UHGV-0071487_85	Structural annotation	PF04630, TIGR01603, COG5437	NA	NA
UHGV-0071487_86	PHROG	phrog_36579	NA	unknown function
UHGV-0071487_89	PHROG	phrog_305	tail length tape measure protein	tail
UHGV-0071487_89	UniRef90	UniRef90_A0A1X2Z8L9	Structural protein	NA
UHGV-0071487_89	eggNOG-mapper	35760.BCHO_0831	domain protein	NA
UHGV-0071487_89	COG	COG0840	Methyl-accepting chemotaxis protein (MCP)	NA
UHGV-0071487_90	UniRef90	UniRef90_A0A087E4D3	Phage tail protein	NA
UHGV-0071487_90	eggNOG-mapper	1680.BADO_1231	NA	NA
UHGV-0071487_90	Structural annotation	PF16774, TIGR01633, COG4722	NA	NA
UHGV-0071487_91	PHROG	phrog_538	minor tail protein	tail
UHGV-0071487_91	UniRef90	UniRef90_A0A087BHI6	Phage head fiber protein	NA
UHGV-0071487_91	eggNOG-mapper	1680.BADO_1230	NA	NA
UHGV-0071487_91	Structural annotation	PF14594, NF033848, COG4379	NA	NA
UHGV-0071487_93	PHROG	phrog_9994	NA	unknown function
UHGV-0071487_93	eggNOG-mapper	1680.BADO_1228	NA	NA
UHGV-0071487_93	Structural annotation	PF20747, PF08931	NA	NA
UHGV-0071487_97	KOfam	K14059	int; integrase	NA
UHGV-0071487_97	PHROG	phrog_1	integrase	integration and excision
UHGV-0071487_97	UniRef90	UniRef90_A0A1X3A1N7	Recombinase	NA
UHGV-0071487_97	eggNOG-mapper	1680.BADO_1224	DNA integration	NA
UHGV-0071487_97	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0071487_97	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0071487_97	Structural annotation	PF00589, MF_01807, TIGR02224, COG4974	NA	NA
UHGV-0071487_98	PHROG	phrog_28754	NA	unknown function
UHGV-0071487_98	UniRef90	UniRef90_A0A174BVV4	Tail type measure protein	NA
UHGV-0071487_98	eggNOG-mapper	1437610.BREU_1370	outer membrane autotransporter barrel domain protein	NA
UHGV-0071487_98	COG	COG3468	Autotransporter adhesin AidA	NA
UHGV-0071487_103	PHROG	phrog_14030	NA	unknown function
UHGV-0071487_103	UniRef90	UniRef90_A0A173ZVN0	Bacteriophage peptidoglycan hydrolase	NA
UHGV-0071487_103	eggNOG-mapper	218140.BPSY_0950	NLP P60 protein	NA
UHGV-0071487_103	Pfam	PF05382	Bacteriophage peptidoglycan hydrolase	Amidase_5
UHGV-0071487_103	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0071487_103	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0071487_103	Structural annotation	PF00877, TIGR02594, COG3738	NA	NA
UHGV-0071487_104	UniRef90	UniRef90_A0A0A7I2K7	DoxX	NA
UHGV-0071487_104	eggNOG-mapper	1120979.ATVB01000037_gene1493	NA	NA