UHGV-0071495

Genome information

Genome length 28,963 bps

CDS count 42

Completeness 61.53% (medium-quality)

geNomad score 0.9820

Prediction confidence Confident

Genome information
Genome ID	UHGV-0071495
vOTU ID	vOTU-029575
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_137369
BioSample	SAMEA2737745
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	61.53% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9820
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	27.47
Jumbo phage	No

Genome content
Genome length	28,963 bps
GC content	49.10%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	42
CDS density	92.19%
Average CDS length	638.36 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0071495_1	UniRef90	UniRef90_A0A412AYE6	Nitroreductase domain-containing protein	NA
UHGV-0071495_1	eggNOG-mapper	411470.RUMGNA_00649	NA	NA
UHGV-0071495_1	COG	COG0778	Nitroreductase	NA
UHGV-0071495_2	KOfam	K07560	dtd, DTD; D-aminoacyl-tRNA deacylase [EC:3.1.1.96]	NA
UHGV-0071495_2	UniRef90	UniRef90_A0A2N5NT82	D-aminoacyl-tRNA deacylase	NA
UHGV-0071495_2	eggNOG-mapper	411470.RUMGNA_00650	rejects L-amino acids rather than detecting D-amino acids in the active site. By recycling D-aminoacyl-tRNA to D-amino acids and free tRNA molecules, this enzyme counteracts the toxicity associated with the formation of D-aminoacyl-tRNA entities in vivo and helps enforce protein L-homochirality	NA
UHGV-0071495_2	Pfam	PF02580	D-Tyr-tRNA(Tyr) deacylase	Tyr_Deacylase
UHGV-0071495_2	NCBIFam	TIGR00256.1	D-aminoacyl-tRNA deacylase	NA
UHGV-0071495_2	COG	COG1490	D-aminoacyl-tRNA deacylase	NA
UHGV-0071495_2	HAMAP	MF_00518	D-aminoacyl-tRNA deacylase [dtd]	NA
UHGV-0071495_3	Structural annotation	PF10395, MF_03008, NF000096, COG4692	NA	NA
UHGV-0071495_6	PHROG	phrog_17347	NA	unknown function
UHGV-0071495_6	Structural annotation	PF16408, NF033510	NA	NA
UHGV-0071495_7	PHROG	phrog_10898	NA	unknown function
UHGV-0071495_7	UniRef90	UniRef90_A0A7U3NJT3	Putative Ig-like domain-containing protein	NA
UHGV-0071495_7	eggNOG-mapper	1347368.HG964403_gene4490	S-layer homology domain	NA
UHGV-0071495_7	COG	COG4632	Sugar-P-sugar glycosidase (uncovering enzyme, UCE), NAGPA superfamily	NA
UHGV-0071495_7	Structural annotation	PF19081, PF15418, MF_01905, NF032891, COG3291	NA	NA
UHGV-0071495_9	Structural annotation	PF10651, COG5456	NA	NA
UHGV-0071495_11	PHROG	phrog_32744	NA	unknown function
UHGV-0071495_11	eggNOG-mapper	1120998.AUFC01000030_gene2247	NA	NA
UHGV-0071495_11	Structural annotation	PF14594, PF21722, NF033848, COG4379	NA	NA
UHGV-0071495_12	PHROG	phrog_1194	NA	unknown function
UHGV-0071495_12	eggNOG-mapper	1120998.AUFC01000030_gene2246	NA	NA
UHGV-0071495_12	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0071495_13	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0071495_13	UniRef90	UniRef90_A0A1C5N801	ATPase involved in DNA repair	NA
UHGV-0071495_13	eggNOG-mapper	1158612.I580_01921	SLT domain	NA
UHGV-0071495_13	COG	COG1511	NA	NA
UHGV-0071495_14	PHROG	phrog_706	NA	unknown function
UHGV-0071495_14	UniRef90	UniRef90_UPI00164ABC94	Gp15 family bacteriophage protein	NA
UHGV-0071495_14	eggNOG-mapper	663278.Ethha_0489	Bacteriophage Gp15 protein	NA
UHGV-0071495_14	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0071495_14	Structural annotation	PF06854	NA	NA
UHGV-0071495_15	PHROG	phrog_11299	NA	unknown function
UHGV-0071495_15	UniRef90	UniRef90_A0A2Z4QA03	Tail assembly chaperone protein	NA
UHGV-0071495_15	eggNOG-mapper	1120746.CCNL01000014_gene2103	NA	NA
UHGV-0071495_15	Structural annotation	PF10666	NA	NA
UHGV-0071495_16	PHROG	phrog_3099	NA	unknown function
UHGV-0071495_16	eggNOG-mapper	645991.Sgly_0346	NA	NA
UHGV-0071495_16	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0071495_17	PHROG	phrog_3266	tail completion	connector
UHGV-0071495_17	eggNOG-mapper	1232443.BAIA02000078_gene24	NA	NA
UHGV-0071495_17	Structural annotation	PF12691	NA	NA
UHGV-0071495_18	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0071495_18	UniRef90	UniRef90_UPI0006C7F62A	minor capsid protein	NA
UHGV-0071495_18	eggNOG-mapper	1226322.HMPREF1545_00054	Minor capsid protein	NA
UHGV-0071495_18	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0071495_18	Structural annotation	PF11114	NA	NA
UHGV-0071495_19	PHROG	phrog_3366	NA	unknown function
UHGV-0071495_19	eggNOG-mapper	1120746.CCNL01000014_gene2099	NA	NA
UHGV-0071495_19	Structural annotation	PF20536, COG5437	NA	NA
UHGV-0071495_20	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0071495_20	UniRef90	UniRef90_UPI0006C77A91	phage minor capsid protein	NA
UHGV-0071495_20	eggNOG-mapper	1226322.HMPREF1545_00046	Phage minor capsid protein 2	NA
UHGV-0071495_20	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0071495_20	COG	COG2369	NA	NA
UHGV-0071495_20	Structural annotation	PF06152	NA	NA
UHGV-0071495_21	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0071495_21	eggNOG-mapper	1120998.AUFC01000030_gene2237	NA	NA
UHGV-0071495_22	PHROG	phrog_29	major head protein	head and packaging
UHGV-0071495_22	UniRef90	UniRef90_UPI0004AE1FFD	major capsid protein	NA
UHGV-0071495_22	eggNOG-mapper	1232443.BAIA02000078_gene29	Phage major capsid protein E	NA
UHGV-0071495_22	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-0071495_22	Structural annotation	PF03864, MF_04133, NF041162, COG4653	NA	NA
UHGV-0071495_23	PHROG	phrog_909	major head protein	head and packaging
UHGV-0071495_23	UniRef90	UniRef90_K1TUL5	NA	NA
UHGV-0071495_23	eggNOG-mapper	1536772.R70723_06665	NA	NA
UHGV-0071495_23	Structural annotation	PF02924	NA	NA
UHGV-0071495_24	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0071495_24	UniRef90	UniRef90_A0A2Z4Q9Y8	Minor structural protein	NA
UHGV-0071495_24	eggNOG-mapper	1232443.BAIA02000078_gene31	NA	NA
UHGV-0071495_24	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0071495_24	Structural annotation	PF06810	NA	NA
UHGV-0071495_25	PHROG	phrog_8680	NA	unknown function
UHGV-0071495_25	UniRef90	UniRef90_A0A413TTC4	NA	NA
UHGV-0071495_25	eggNOG-mapper	411470.RUMGNA_02208	NA	NA
UHGV-0071495_25	Pfam	PF14386	NA	DUF4417
UHGV-0071495_25	Structural annotation	PF14386	NA	NA
UHGV-0071495_26	PHROG	phrog_9479	NA	unknown function
UHGV-0071495_26	eggNOG-mapper	511680.BUTYVIB_01226	NA	NA
UHGV-0071495_26	Structural annotation	PF15529	NA	NA
UHGV-0071495_27	PHROG	phrog_533	portal protein	head and packaging
UHGV-0071495_27	UniRef90	UniRef90_A0A417HAG6	Phage portal protein	NA
UHGV-0071495_27	eggNOG-mapper	1232443.BAIA02000078_gene36	NA	NA
UHGV-0071495_27	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0071495_27	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0071495_28	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0071495_28	PHROG	phrog_10250	NA	unknown function
UHGV-0071495_28	UniRef90	UniRef90_E2ZNR1	Phage terminase, large subunit, PBSX family	NA
UHGV-0071495_28	eggNOG-mapper	748224.HMPREF9436_03341	Phage terminase, large subunit, PBSX family	NA
UHGV-0071495_28	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0071495_28	COG	COG1783	Phage terminase large subunit	NA
UHGV-0071495_28	Structural annotation	PF03237, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0071495_29	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0071495_29	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0071495_29	UniRef90	UniRef90_A0A658JX60	Terminase small subunit	NA
UHGV-0071495_29	eggNOG-mapper	665942.HMPREF1022_02667	PFAM Terminase small subunit	NA
UHGV-0071495_29	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0071495_29	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0071495_29	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0071495_30	PHROG	phrog_419	NA	unknown function
UHGV-0071495_30	UniRef90	UniRef90_A0A060QMU0	NA	NA
UHGV-0071495_30	eggNOG-mapper	1123312.KB904569_gene346	NA	NA
UHGV-0071495_30	Structural annotation	PF14083	NA	NA
UHGV-0071495_31	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0071495_31	UniRef90	UniRef90_UPI000496DFC6	NA	NA
UHGV-0071495_31	eggNOG-mapper	862517.HMPREF9225_0469	sigma factor activity	NA
UHGV-0071495_31	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0071495_31	Structural annotation	PF07374, TIGR01636	NA	NA
UHGV-0071495_32	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0071495_32	PHROG	phrog_67	DNA methyltransferase	other
UHGV-0071495_32	UniRef90	UniRef90_A0A1Y4WB47	Methyltransferase	NA
UHGV-0071495_32	eggNOG-mapper	1378168.N510_02840	DNA methylase	NA
UHGV-0071495_32	PADLOC	MTase_II_00172	Type II methyltransferase	RM
UHGV-0071495_32	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0071495_32	COG	COG0863	DNA modification methylase	NA
UHGV-0071495_32	Structural annotation	PF01555, MF_01872, NF008572, COG0863	NA	NA
UHGV-0071495_33	PHROG	phrog_924	NA	unknown function
UHGV-0071495_33	UniRef90	UniRef90_A0A1C7FSW4	NA	NA
UHGV-0071495_33	Pfam	PF04448	NA	DUF551
UHGV-0071495_33	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0071495_33	Structural annotation	NF041588	NA	NA
UHGV-0071495_34	PHROG	phrog_8684	NA	unknown function
UHGV-0071495_34	UniRef90	UniRef90_A0A1C6CH94	YopX protein	NA
UHGV-0071495_34	eggNOG-mapper	1226322.HMPREF1545_00036	YopX protein	NA
UHGV-0071495_34	Pfam	PF09643	YopX protein	YopX
UHGV-0071495_34	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-0071495_34	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0071495_35	PHROG	phrog_2245	nucleoside triphosphate pyrophosphohydrolase	other
UHGV-0071495_35	UniRef90	UniRef90_A0A4U9RLZ8	NA	NA
UHGV-0071495_35	eggNOG-mapper	428125.CLOLEP_01814	COG NOG14118 non supervised orthologous group	NA
UHGV-0071495_35	Structural annotation	PF12643, MF_01020, TIGR03188	NA	NA
UHGV-0071495_37	PHROG	phrog_22543	NA	unknown function
UHGV-0071495_38	PHROG	phrog_38832	NA	unknown function
UHGV-0071495_38	eggNOG-mapper	665956.HMPREF1032_03087	NA	NA
UHGV-0071495_39	eggNOG-mapper	665956.HMPREF1032_03084	NA	NA
UHGV-0071495_41	PHROG	phrog_757	DNA methyltransferase	other
UHGV-0071495_41	UniRef90	UniRef90_A0A372V4B7	DNA cytosine methyltransferase	NA
UHGV-0071495_41	eggNOG-mapper	485918.Cpin_3834	DNA (cytosine-5-)-methyltransferase activity	NA
UHGV-0071495_41	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0071495_41	Structural annotation	PF00145, MF_01872, TIGR00675, COG0270	NA	NA
UHGV-0071495_42	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-0071495_42	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0071495_42	UniRef90	UniRef90_UPI00164AFBC1	phosphoadenosine phosphosulfate reductase family protein	NA
UHGV-0071495_42	eggNOG-mapper	1408437.JNJN01000032_gene2312	Phosphoadenosine phosphosulfate reductase	NA
UHGV-0071495_42	PADLOC	BrxP_00001	BrxP	BREX
UHGV-0071495_42	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0071495_42	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0071495_42	Structural annotation	PF01507, MF_00063, NF010369, COG0175	NA	NA