UHGV-0071501

Genome information

Genome length 26,514 bps

CDS count 39

Completeness 72.69% (medium-quality)

geNomad score 0.9738

Prediction confidence Confident

Genome information
Genome ID	UHGV-0071501
vOTU ID	vOTU-016279
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_137371
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	72.69% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	12
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9738
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	11.15
Jumbo phage	No

Genome content
Genome length	26,514 bps
GC content	44.84%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	39
CDS density	89.07%
Average CDS length	607.69 bps
tRNA count	2
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0071501_2	UniRef90	UniRef90_UPI001C10E759	NA	NA
UHGV-0071501_2	eggNOG-mapper	1216932.CM240_2908	NA	NA
UHGV-0071501_2	Pfam	PF08874	NA	DUF1835
UHGV-0071501_2	Pfam	PF12395	NA	DUF3658
UHGV-0071501_3	UniRef90	UniRef90_UPI001BC7AC8C	Transposase	NA
UHGV-0071501_3	eggNOG-mapper	397291.C804_05129	NA	NA
UHGV-0071501_3	COG	COG3039	Transposase and inactivated derivatives, IS5 family	NA
UHGV-0071501_4	UniRef90	UniRef90_UPI001D07CE7E	transposase	NA
UHGV-0071501_4	eggNOG-mapper	1235796.C815_00818	Transposase	NA
UHGV-0071501_4	COG	COG3039	Transposase and inactivated derivatives, IS5 family	NA
UHGV-0071501_5	KOfam	K17733	cwlK; peptidoglycan LD-endopeptidase CwlK [EC:3.4.-.-]	NA
UHGV-0071501_5	PHROG	phrog_2649	endolysin	lysis
UHGV-0071501_5	UniRef90	UniRef90_R6ZH33	Peptidase_M15_4 domain-containing protein	NA
UHGV-0071501_5	eggNOG-mapper	1235802.C823_01946	D-alanyl-D-alanine carboxypeptidase	NA
UHGV-0071501_5	Pfam	PF13539	D-alanyl-D-alanine carboxypeptidase	Peptidase_M15_4
UHGV-0071501_5	COG	COG1876	LD-carboxypeptidase LdcB, LAS superfamily	NA
UHGV-0071501_5	Structural annotation	PF02557, PF19127, MF_01924, NF007557, TIGR04035, COG2173	NA	NA
UHGV-0071501_7	PHROG	phrog_199	holin	lysis
UHGV-0071501_7	UniRef90	UniRef90_A0A2H4JCP5	Putative lysis protein	NA
UHGV-0071501_7	eggNOG-mapper	742740.HMPREF9474_04290	Bacteriophage holin family	NA
UHGV-0071501_7	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0071501_7	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0071501_7	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0071501_7	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0071501_8	eggNOG-mapper	742740.HMPREF9474_04291	NA	NA
UHGV-0071501_10	KOfam	K03733	xerC; integrase/recombinase XerC	NA
UHGV-0071501_10	PHROG	phrog_1	integrase	integration and excision
UHGV-0071501_10	UniRef90	UniRef90_A0A396NBJ2	Integrase	NA
UHGV-0071501_10	eggNOG-mapper	610130.Closa_3343	Belongs to the 'phage' integrase family	NA
UHGV-0071501_10	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0071501_10	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0071501_10	Structural annotation	PF00589, PF02899, MF_01807, TIGR02224, COG4973	NA	NA
UHGV-0071501_11	PHROG	phrog_3639	minor tail protein	tail
UHGV-0071501_11	UniRef90	UniRef90_UPI001899CC0D	BppU family phage baseplate upper protein	NA
UHGV-0071501_11	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-0071501_12	PHROG	phrog_12764	NA	unknown function
UHGV-0071501_12	Structural annotation	PF01176, MF_00085, TIGR00523, COG0361	NA	NA
UHGV-0071501_13	PHROG	phrog_26795	NA	unknown function
UHGV-0071501_13	eggNOG-mapper	742740.HMPREF9474_04294	NA	NA
UHGV-0071501_13	Structural annotation	PF14594, NF033848, COG4379	NA	NA
UHGV-0071501_14	PHROG	phrog_37549	virion structural protein	head and packaging
UHGV-0071501_14	UniRef90	UniRef90_UPI00189CF998	DNRLRE domain-containing protein	NA
UHGV-0071501_14	eggNOG-mapper	997296.PB1_16159	self proteolysis	NA
UHGV-0071501_14	COG	COG3209	NA	NA
UHGV-0071501_14	Structural annotation	PF06995, PF02010, MF_04116, TIGR02126, NF041431, COG3499, COG2372	NA	NA
UHGV-0071501_15	PHROG	phrog_2276	tail length tape measure protein	tail
UHGV-0071501_15	UniRef90	UniRef90_UPI001D1265F0	phage tail tape measure protein	NA
UHGV-0071501_15	eggNOG-mapper	742740.HMPREF9474_04296	Phage tail tape measure protein TP901	NA
UHGV-0071501_15	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0071501_15	Structural annotation	TIGR01760, COG5280	NA	NA
UHGV-0071501_18	PHROG	phrog_88	major tail protein	tail
UHGV-0071501_18	UniRef90	UniRef90_A0A414AVG1	Phage tail protein	NA
UHGV-0071501_18	eggNOG-mapper	742740.HMPREF9474_04299	NA	NA
UHGV-0071501_18	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0071501_18	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0071501_19	Structural annotation	PF06141	NA	NA
UHGV-0071501_20	Structural annotation	TIGR01725	NA	NA
UHGV-0071501_21	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-0071501_21	UniRef90	UniRef90_A0A6N9P9M6	Phage head-tail adapter protein	NA
UHGV-0071501_21	eggNOG-mapper	642492.Clole_1861	head-tail adaptor	NA
UHGV-0071501_21	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0071501_21	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0071501_22	PHROG	phrog_5223	neck protein	connector
UHGV-0071501_22	UniRef90	UniRef90_A0A3D2X9T8	DNA-packaging protein	NA
UHGV-0071501_22	eggNOG-mapper	561177.ANHYDRO_01411	NA	NA
UHGV-0071501_22	Structural annotation	TIGR01560	NA	NA
UHGV-0071501_23	PHROG	phrog_10	major head protein	head and packaging
UHGV-0071501_23	UniRef90	UniRef90_A0A174XIH6	Phage major capsid protein, HK97 family	NA
UHGV-0071501_23	eggNOG-mapper	1280689.AUJC01000011_gene1521	Phage major capsid protein, HK97 family	NA
UHGV-0071501_23	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0071501_23	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0071501_23	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0071501_23	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0071501_24	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0071501_24	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0071501_24	UniRef90	UniRef90_A0A174XQS2	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0071501_24	eggNOG-mapper	1280689.AUJC01000011_gene1520	Belongs to the peptidase S14 family	NA
UHGV-0071501_24	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0071501_24	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0071501_24	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA
UHGV-0071501_25	PHROG	phrog_12	portal protein	head and packaging
UHGV-0071501_25	UniRef90	UniRef90_A0A414AVF4	Phage portal protein	NA
UHGV-0071501_25	eggNOG-mapper	1235793.C809_01918	Phage portal protein	NA
UHGV-0071501_25	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0071501_25	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0071501_25	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0071501_26	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0071501_26	UniRef90	UniRef90_A0A2T3EZM3	Terminase large subunit	NA
UHGV-0071501_26	eggNOG-mapper	626523.GCWU000342_01028	Phage terminase-like protein large subunit	NA
UHGV-0071501_26	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0071501_26	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0071501_26	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0071501_26	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0071501_27	PHROG	phrog_1066	NA	unknown function
UHGV-0071501_27	eggNOG-mapper	1341151.ASZU01000004_gene265	NA	NA
UHGV-0071501_27	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0071501_28	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0071501_28	UniRef90	UniRef90_D9SQ19	Prophage LambdaBa04, GP54	NA
UHGV-0071501_28	eggNOG-mapper	573061.Clocel_2442	HNH endonuclease	NA
UHGV-0071501_28	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0071501_30	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0071501_30	UniRef90	UniRef90_UPI001D089637	NA	NA
UHGV-0071501_30	eggNOG-mapper	1304866.K413DRAFT_3028	NA	NA
UHGV-0071501_30	Pfam	PF07374	NA	DUF1492
UHGV-0071501_30	Structural annotation	PF04545	NA	NA
UHGV-0071501_31	PHROG	phrog_3886	NA	unknown function
UHGV-0071501_31	eggNOG-mapper	742735.HMPREF9467_00880	NA	NA
UHGV-0071501_32	KOfam	K03744	lemA; LemA protein	NA
UHGV-0071501_32	PHROG	phrog_1383	virion structural protein	head and packaging
UHGV-0071501_32	UniRef90	UniRef90_A0A6N2WCF4	LemA family protein	NA
UHGV-0071501_32	eggNOG-mapper	1298920.KI911353_gene2688	LemA family	NA
UHGV-0071501_32	Pfam	PF04011	LemA family	LemA
UHGV-0071501_32	COG	COG1704	Magnetosome formation protein MamQ, lipoprotein antigen LemA family	NA
UHGV-0071501_32	Structural annotation	PF04011, NF040966, COG1704	NA	NA
UHGV-0071501_33	UniRef90	UniRef90_UPI001BC026BF	NA	NA
UHGV-0071501_33	eggNOG-mapper	411462.DORLON_00804	NA	NA
UHGV-0071501_33	Pfam	PF04448	NA	DUF551
UHGV-0071501_33	Structural annotation	NF041588	NA	NA
UHGV-0071501_34	eggNOG-mapper	610130.Closa_0421	NA	NA
UHGV-0071501_35	eggNOG-mapper	411902.CLOBOL_05681	NA	NA
UHGV-0071501_36	PHROG	phrog_15077	NA	unknown function
UHGV-0071501_36	eggNOG-mapper	742765.HMPREF9457_02110	NA	NA
UHGV-0071501_36	Structural annotation	PF11300, NF038070	NA	NA
UHGV-0071501_37	UniRef90	UniRef90_R7AV01	LexA_DNA_bind domain-containing protein	NA
UHGV-0071501_37	Pfam	PF01726	LexA DNA binding domain	LexA_DNA_bind
UHGV-0071501_37	COG	COG2188	DNA-binding transcriptional regulator, GntR family	NA
UHGV-0071501_37	Structural annotation	PF01726, MF_00732, NF008273, COG1321	NA	NA