UHGV-0071562

Genome information

Genome length 29,457 bps

CDS count 52

Completeness 82.40% (medium-quality)

geNomad score 0.9776

Prediction confidence Confident

Genome information
Genome ID	UHGV-0071562
vOTU ID	vOTU-029620
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_116713
BioSample	SAMEA2579929
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	82.40% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	20
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9776
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	37.59
Jumbo phage	No

Genome content
Genome length	29,457 bps
GC content	43.36%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	52
CDS density	91.70%
Average CDS length	524.25 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0071562_1	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0071562_1	UniRef90	UniRef90_A0A412AV81	XRE family transcriptional regulator	NA
UHGV-0071562_1	eggNOG-mapper	1145276.T479_20145	Helix-turn-helix XRE-family like proteins	NA
UHGV-0071562_1	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0071562_1	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0071562_1	Structural annotation	PF01381, MF_00535, NF007257, COG1476	NA	NA
UHGV-0071562_5	PHROG	phrog_4392	NA	unknown function
UHGV-0071562_5	UniRef90	UniRef90_UPI000E489044	membrane lipoprotein lipid attachment site-containing protein	NA
UHGV-0071562_13	PHROG	phrog_2872	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0071562_13	UniRef90	UniRef90_A0A412AWF4	ATP-binding protein	NA
UHGV-0071562_13	eggNOG-mapper	1345695.CLSA_c30180	AAA domain	NA
UHGV-0071562_13	Pfam	PF13479	AAA domain	AAA_24
UHGV-0071562_13	Structural annotation	PF13479, MF_00350, TIGR01618, COG0468	NA	NA
UHGV-0071562_15	PHROG	phrog_18107	NA	unknown function
UHGV-0071562_15	eggNOG-mapper	476272.RUMHYD_02831	NA	NA
UHGV-0071562_15	Structural annotation	PF05037	NA	NA
UHGV-0071562_16	PHROG	phrog_3490	ERCC4-type nuclease	DNA, RNA and nucleotide metabolism
UHGV-0071562_16	UniRef90	UniRef90_R6N0P8	ERCC4 domain-containing protein	NA
UHGV-0071562_16	eggNOG-mapper	476272.RUMHYD_01740	ERCC4 domain	NA
UHGV-0071562_16	Pfam	PF02732	ERCC4 domain	ERCC4
UHGV-0071562_16	COG	COG1948	ERCC4-type crossover junction endonuclease	NA
UHGV-0071562_16	Structural annotation	PF02732, NF040956, COG1948	NA	NA
UHGV-0071562_17	PHROG	phrog_2514	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0071562_17	UniRef90	UniRef90_A0A1M5ZHR8	TF_AP-2 domain-containing protein	NA
UHGV-0071562_17	eggNOG-mapper	1348583.ATLH01000031_gene1927	DnaD domain protein	NA
UHGV-0071562_17	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0071562_17	Structural annotation	PF10771, MF_01177, TIGR01714, COG5529	NA	NA
UHGV-0071562_18	KOfam	K17680	PEO1; twinkle protein [EC:5.6.2.3]	NA
UHGV-0071562_18	PHROG	phrog_239	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UHGV-0071562_18	UniRef90	UniRef90_R6P3P1	SF4 helicase domain-containing protein	NA
UHGV-0071562_18	eggNOG-mapper	476272.RUMHYD_02834	NA	NA
UHGV-0071562_18	Pfam	PF06745	KaiC	ATPase
UHGV-0071562_18	COG	COG0305	Replicative DNA helicase	NA
UHGV-0071562_18	Structural annotation	PF03796, PF19898, MF_04154, TIGR03877, TIGR01391, COG0467, COG0358	NA	NA
UHGV-0071562_21	PHROG	phrog_757	DNA methyltransferase	other
UHGV-0071562_21	UniRef90	UniRef90_A0A6M3L5L0	Putative methyltransferase	NA
UHGV-0071562_21	eggNOG-mapper	1226322.HMPREF1545_03521	C-5 cytosine-specific DNA methylase	NA
UHGV-0071562_21	Structural annotation	PF00145, TIGR00675, COG0270	NA	NA
UHGV-0071562_22	PHROG	phrog_2245	nucleoside triphosphate pyrophosphohydrolase	other
UHGV-0071562_22	UniRef90	UniRef90_A0A4U9RLZ8	NA	NA
UHGV-0071562_22	eggNOG-mapper	428125.CLOLEP_01814	COG NOG14118 non supervised orthologous group	NA
UHGV-0071562_22	Structural annotation	PF12643, MF_01020, TIGR03188	NA	NA
UHGV-0071562_26	UniRef90	UniRef90_UPI001C3A10B1	Zinc ribbon domain-containing protein	NA
UHGV-0071562_26	eggNOG-mapper	742738.HMPREF9460_04055	NA	NA
UHGV-0071562_28	PHROG	phrog_25732	NA	unknown function
UHGV-0071562_30	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0071562_30	eggNOG-mapper	428125.CLOLEP_01806	NA	NA
UHGV-0071562_30	Structural annotation	PF07374, TIGR01636	NA	NA
UHGV-0071562_31	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0071562_31	PHROG	phrog_1595	terminase small subunit	head and packaging
UHGV-0071562_31	UniRef90	UniRef90_A0A412AXK9	Terminase	NA
UHGV-0071562_31	eggNOG-mapper	1158602.I590_02986	DNA packaging	NA
UHGV-0071562_31	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0071562_31	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0071562_32	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0071562_32	UniRef90	UniRef90_UPI00046F67CE	terminase family protein	NA
UHGV-0071562_32	eggNOG-mapper	1232453.BAIF02000011_gene3352	NA	NA
UHGV-0071562_32	Structural annotation	PF17289, PF05876, MF_04147, NF033889, COG5323	NA	NA
UHGV-0071562_33	PHROG	phrog_64	portal protein	head and packaging
UHGV-0071562_33	UniRef90	UniRef90_A0A412AXG4	Phage portal protein	NA
UHGV-0071562_33	eggNOG-mapper	1235792.C808_05332	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0071562_33	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0071562_33	NCBIFam	TIGR01538.1	phage portal protein	NA
UHGV-0071562_33	Structural annotation	PF05133, MF_04120, TIGR01538, COG5518	NA	NA
UHGV-0071562_34	PHROG	phrog_115	minor head protein	head and packaging
UHGV-0071562_34	UniRef90	UniRef90_A0A412AXN9	Phage_Mu_F domain-containing protein	NA
UHGV-0071562_34	eggNOG-mapper	1235792.C808_05333	Phage Mu protein F like protein	NA
UHGV-0071562_34	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0071562_34	Pfam	PF21814	NA	DUF6883
UHGV-0071562_34	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0071562_34	COG	COG2369	NA	NA
UHGV-0071562_34	Structural annotation	PF04233, TIGR01641	NA	NA
UHGV-0071562_35	UniRef90	UniRef90_F5RJP5	Chaperonin	NA
UHGV-0071562_35	eggNOG-mapper	1200557.JHWV01000022_gene2459	NA	NA
UHGV-0071562_35	Structural annotation	PF02699, MF_00369, TIGR00739, COG1862	NA	NA
UHGV-0071562_37	KOfam	K03671	trxA; thioredoxin 1	NA
UHGV-0071562_37	UniRef90	UniRef90_A0A412AXE3	Thioredoxin	NA
UHGV-0071562_37	eggNOG-mapper	1123252.ATZF01000010_gene369	Thioredoxin	NA
UHGV-0071562_37	Pfam	PF00085	Thioredoxin	Thioredoxin
UHGV-0071562_37	COG	COG3118	Chaperedoxin CnoX, contains thioredoxin-like and TPR-like domains, YbbN/TrxSC family	NA
UHGV-0071562_37	Structural annotation	PF00085, MF_01835, TIGR01068, COG0526	NA	NA
UHGV-0071562_39	KOfam	K07584	NA	NA
UHGV-0071562_39	PHROG	phrog_4478	peptidase	other
UHGV-0071562_39	UniRef90	UniRef90_A0A412AXD6	Ribosomal-processing cysteine protease Prp	NA
UHGV-0071562_39	eggNOG-mapper	476272.RUMHYD_02852	Cysteine protease Prp	NA
UHGV-0071562_39	Pfam	PF04327	Cysteine protease Prp	Peptidase_Prp
UHGV-0071562_39	COG	COG2868	NA	NA
UHGV-0071562_39	Structural annotation	PF04327, NF011124, COG2868	NA	NA
UHGV-0071562_40	PHROG	phrog_172	head scaffolding protein	head and packaging
UHGV-0071562_40	UniRef90	UniRef90_A0A412AXT0	NA	NA
UHGV-0071562_40	eggNOG-mapper	1232453.BAIF02000011_gene3358	NA	NA
UHGV-0071562_40	Pfam	PF14265	NA	DUF4355
UHGV-0071562_40	Structural annotation	PF14265	NA	NA
UHGV-0071562_41	PHROG	phrog_544	major head protein	head and packaging
UHGV-0071562_41	UniRef90	UniRef90_A0A2V2CVM8	S-l_SbsC_C domain-containing protein	NA
UHGV-0071562_41	eggNOG-mapper	1232453.BAIF02000011_gene3359	NA	NA
UHGV-0071562_41	Pfam	PF18316	S-layer protein SbsC C-terminal domain	S-l_SbsC_C
UHGV-0071562_41	Structural annotation	PF03864, PF18316, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0071562_42	PHROG	phrog_132	head-tail adaptor	connector
UHGV-0071562_42	UniRef90	UniRef90_UPI00110715F1	phage head-tail connector protein	NA
UHGV-0071562_42	eggNOG-mapper	1235792.C808_05341	NA	NA
UHGV-0071562_42	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0071562_42	Structural annotation	PF05135	NA	NA
UHGV-0071562_43	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0071562_44	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0071562_44	UniRef90	UniRef90_A0A412AXL7	HK97 gp10 family phage protein	NA
UHGV-0071562_44	eggNOG-mapper	742722.HMPREF9463_00249	NA	NA
UHGV-0071562_44	Structural annotation	PF17395, TIGR01725, COG5005	NA	NA
UHGV-0071562_45	PHROG	phrog_176	tail terminator	connector
UHGV-0071562_45	UniRef90	UniRef90_A0A412AXH4	NA	NA
UHGV-0071562_45	eggNOG-mapper	1235792.C808_05344	NA	NA
UHGV-0071562_45	Pfam	PF16807	NA	DUF5072
UHGV-0071562_45	Structural annotation	PF16807, COG5003	NA	NA
UHGV-0071562_46	PHROG	phrog_1407	major tail protein	tail
UHGV-0071562_46	UniRef90	UniRef90_A0A412AXG9	Phage major tail protein, TP901-1 family	NA
UHGV-0071562_46	eggNOG-mapper	1235792.C808_05345	Phage tail tube protein	NA
UHGV-0071562_46	Pfam	PF06199	Phage tail tube protein	Phage_tail_2
UHGV-0071562_46	Pfam	PF18316	S-layer protein SbsC C-terminal domain	S-l_SbsC_C
UHGV-0071562_46	NCBIFam	TIGR02126.1	phage major tail protein, TP901-1 family	NA
UHGV-0071562_46	COG	COG5437	Phage tail protein, TP901-1 family	NA
UHGV-0071562_46	Structural annotation	PF06199, PF18316, TIGR02126, COG5437	NA	NA
UHGV-0071562_47	PHROG	phrog_2115	tail protein	tail
UHGV-0071562_47	UniRef90	UniRef90_R5KJ84	BH3520 protein	NA
UHGV-0071562_47	eggNOG-mapper	1235792.C808_05346	NA	NA
UHGV-0071562_47	Structural annotation	PF11836	NA	NA
UHGV-0071562_48	PHROG	phrog_7423	NA	unknown function
UHGV-0071562_48	UniRef90	UniRef90_UPI001BB3399C	phenylalanine racemase	NA
UHGV-0071562_48	eggNOG-mapper	1235792.C808_05347	NA	NA
UHGV-0071562_49	PHROG	phrog_58	tail length tape measure protein	tail
UHGV-0071562_49	UniRef90	UniRef90_UPI000E491C35	tape measure protein	NA
UHGV-0071562_49	eggNOG-mapper	411470.RUMGNA_02228	tape measure	NA
UHGV-0071562_49	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0071562_49	Pfam	PF04513	Baculovirus polyhedron envelope protein, PEP, C terminus	Baculo_PEP_C
UHGV-0071562_49	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0071562_49	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0071562_49	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0071562_50	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0071562_50	UniRef90	UniRef90_A0A412AXU0	Phage tail protein	NA
UHGV-0071562_50	eggNOG-mapper	1235798.C817_02569	tail component	NA
UHGV-0071562_50	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0071562_50	COG	COG4722	Phage-related protein YomH	NA
UHGV-0071562_50	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0071562_51	PHROG	phrog_13289	tail protein	tail
UHGV-0071562_51	UniRef90	UniRef90_A0A412AXS9	Peptidase S74 domain-containing protein	NA
UHGV-0071562_51	eggNOG-mapper	1235798.C817_02568	Prophage endopeptidase tail	NA
UHGV-0071562_51	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0071562_51	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0071562_51	COG	COG2885	Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins	NA
UHGV-0071562_51	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0071562_52	PHROG	phrog_16573	NA	unknown function
UHGV-0071562_52	UniRef90	UniRef90_A0A1C6CMD3	BppU_N domain-containing protein	NA
UHGV-0071562_52	eggNOG-mapper	428125.CLOLEP_02045	NA	NA
UHGV-0071562_52	Pfam	PF10651	BppU N-terminal domain	BppU_N