UHGV-0071580

Genome information

Genome length 41,955 bps

CDS count 68

Completeness 99.14% (high-quality)

geNomad score 0.9731

Prediction confidence Confident

Genome information
Genome ID	UHGV-0071580
vOTU ID	vOTU-011174
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_117238
BioSample	NA
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.14% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	26
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9731
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	48.44
Jumbo phage	No

Genome content
Genome length	41,955 bps
GC content	35.24%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	68
CDS density	89.52%
Average CDS length	558.88 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0071580_1	PHROG	phrog_2277	NA	unknown function
UHGV-0071580_1	eggNOG-mapper	1423734.JCM14202_3583	NA	NA
UHGV-0071580_2	KOfam	K07273	acm; lysozyme	NA
UHGV-0071580_2	PHROG	phrog_291	endolysin	lysis
UHGV-0071580_2	UniRef90	UniRef90_A0A366KKC3	Lysin	NA
UHGV-0071580_2	eggNOG-mapper	12417.Q38317_9CAUD	peptidoglycan catabolic process	NA
UHGV-0071580_2	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0071580_2	Structural annotation	PF01183, PF08460, MF_00496, NF033202, NF009621, COG3757	NA	NA
UHGV-0071580_3	PHROG	phrog_19508	holin	lysis
UHGV-0071580_3	UniRef90	UniRef90_Q38316	Holin	NA
UHGV-0071580_4	PHROG	phrog_6664	NA	unknown function
UHGV-0071580_5	PHROG	phrog_4325	holin	lysis
UHGV-0071580_5	eggNOG-mapper	97137.C821_00023	NA	NA
UHGV-0071580_5	Structural annotation	PF14248, COG2259	NA	NA
UHGV-0071580_6	PHROG	phrog_134	NA	unknown function
UHGV-0071580_6	UniRef90	UniRef90_A0A256LBL0	XkdX family protein	NA
UHGV-0071580_6	Pfam	PF09693	Phage uncharacterised protein (Phage_XkdX)	Phage_XkdX
UHGV-0071580_7	PHROG	phrog_16648	NA	unknown function
UHGV-0071580_8	PHROG	phrog_26580	NA	unknown function
UHGV-0071580_8	UniRef90	UniRef90_Q9T1E3	BppU_N domain-containing protein	NA
UHGV-0071580_8	eggNOG-mapper	139871.Q9AZ87_9VIRU	N-acetylmuramoyl-L-alanine amidase activity	NA
UHGV-0071580_8	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-0071580_10	PHROG	phrog_12493	tail protein	tail
UHGV-0071580_10	UniRef90	UniRef90_A0A366KI68	Endopeptidase	NA
UHGV-0071580_10	eggNOG-mapper	1423758.BN55_09560	Phage minor structural protein	NA
UHGV-0071580_10	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0071580_10	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0071580_10	COG	COG4926	Phage-related protein	NA
UHGV-0071580_10	Structural annotation	PF14594, PF19087, TIGR01665, NF038016, COG4926	NA	NA
UHGV-0071580_11	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0071580_11	UniRef90	UniRef90_A0A2M9WJ94	Phage tail protein	NA
UHGV-0071580_11	eggNOG-mapper	12417.Q9T1E6_9CAUD	Phage tail protein	NA
UHGV-0071580_11	Structural annotation	PF05709, TIGR01633, COG4722	NA	NA
UHGV-0071580_12	KOfam	K21471	cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-]	NA
UHGV-0071580_12	PHROG	phrog_167	tail length tape measure protein	tail
UHGV-0071580_12	UniRef90	UniRef90_UPI000C7B7DBA	NlpC/P60 family protein	NA
UHGV-0071580_12	eggNOG-mapper	1423758.BN55_04310	Phage tail tape measure protein TP901	NA
UHGV-0071580_12	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0071580_12	Pfam	PF00877	NlpC/P60 family	NLPC_P60
UHGV-0071580_12	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0071580_12	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0071580_12	Structural annotation	PF10145, TIGR01760, NF008096, COG5280	NA	NA
UHGV-0071580_13	PHROG	phrog_19694	tail assembly chaperone	tail
UHGV-0071580_14	PHROG	phrog_88	major tail protein	tail
UHGV-0071580_14	UniRef90	UniRef90_UPI000C79CFB0	phage tail protein	NA
UHGV-0071580_14	eggNOG-mapper	1225795.K4I1X5_9CAUD	Pfam:Phage_TTP_1	NA
UHGV-0071580_14	Pfam	PF04630	Phage tail tube protein	Phage_TTP_1
UHGV-0071580_14	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0071580_15	PHROG	phrog_1217	tail protein	tail
UHGV-0071580_15	UniRef90	UniRef90_UPI000666BF62	NA	NA
UHGV-0071580_15	Structural annotation	PF05657, COG5003	NA	NA
UHGV-0071580_16	UniRef90	UniRef90_UPI0011909A35	phage tail protein	NA
UHGV-0071580_16	Structural annotation	PF05069, TIGR01725	NA	NA
UHGV-0071580_17	UniRef90	UniRef90_A0A1Y0E1I4	Head-tail adaptor protein	NA
UHGV-0071580_17	eggNOG-mapper	1605.Lani381_0380	Phage head-tail joining protein	NA
UHGV-0071580_17	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0071580_17	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0071580_17	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0071580_18	UniRef90	UniRef90_A0A833FM73	DNA packaging protein	NA
UHGV-0071580_18	eggNOG-mapper	1423758.BN55_04270	Phage gp6-like head-tail connector protein	NA
UHGV-0071580_18	Structural annotation	TIGR01560	NA	NA
UHGV-0071580_19	PHROG	phrog_10	major head protein	head and packaging
UHGV-0071580_19	UniRef90	UniRef90_UPI00189E87F8	phage major capsid protein	NA
UHGV-0071580_19	eggNOG-mapper	12417.Q9T1F6_9CAUD	peptidase activity	NA
UHGV-0071580_19	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0071580_19	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0071580_19	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0071580_20	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0071580_20	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0071580_20	UniRef90	UniRef90_UPI0018A0C4D3	Clp protease ClpP	NA
UHGV-0071580_20	eggNOG-mapper	1423758.BN55_04260	Belongs to the peptidase S14 family	NA
UHGV-0071580_20	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0071580_20	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0071580_20	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA
UHGV-0071580_21	PHROG	phrog_12	portal protein	head and packaging
UHGV-0071580_21	UniRef90	UniRef90_UPI00189EDA74	phage portal protein	NA
UHGV-0071580_21	eggNOG-mapper	1423758.BN55_04255	Phage portal protein	NA
UHGV-0071580_21	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0071580_21	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0071580_21	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0071580_21	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0071580_22	PHROG	phrog_502	membrane protein	moron, auxiliary metabolic gene and host takeover
UHGV-0071580_22	UniRef90	UniRef90_UPI001E44D9F3	NA	NA
UHGV-0071580_22	Pfam	PF06341	NA	DUF1056
UHGV-0071580_22	Structural annotation	PF06341	NA	NA
UHGV-0071580_23	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0071580_23	UniRef90	UniRef90_A0A2Z6PM22	Phage terminase large subunit	NA
UHGV-0071580_23	eggNOG-mapper	1423758.BN55_04245	Phage Terminase	NA
UHGV-0071580_23	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0071580_23	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0071580_23	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0071580_23	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0071580_27	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-0071580_27	UniRef90	UniRef90_A0A833CGB0	Phage terminase small subunit P27 family	NA
UHGV-0071580_27	eggNOG-mapper	1423758.BN55_04240	Phage terminase, small subunit	NA
UHGV-0071580_27	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0071580_27	NCBIFam	TIGR01558.1	phage terminase small subunit P27 family	NA
UHGV-0071580_27	COG	COG3747	Phage terminase, small subunit	NA
UHGV-0071580_27	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0071580_28	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0071580_28	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0071580_28	UniRef90	UniRef90_A0A833CFG4	HNH endonuclease	NA
UHGV-0071580_28	eggNOG-mapper	12417.Q9T1G1_9CAUD	HNH endonuclease	NA
UHGV-0071580_28	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0071580_28	Structural annotation	PF05766, TIGR02646	NA	NA
UHGV-0071580_29	PHROG	phrog_248	transcriptional activator	transcription regulation
UHGV-0071580_29	UniRef90	UniRef90_A0A0R2D2J7	NA	NA
UHGV-0071580_29	eggNOG-mapper	1423758.BN55_04230	Phage transcriptional regulator, ArpU family	NA
UHGV-0071580_29	NCBIFam	TIGR01637.1	ArpU family phage packaging/lysis transcriptional regulator	NA
UHGV-0071580_29	Structural annotation	PF07374, TIGR01637, COG1191	NA	NA
UHGV-0071580_33	PHROG	phrog_26938	NA	unknown function
UHGV-0071580_33	UniRef90	UniRef90_A0A6P1EN23	Sporulation protein Cse60	NA
UHGV-0071580_35	PHROG	phrog_22711	NA	unknown function
UHGV-0071580_36	PHROG	phrog_1997	NA	unknown function
UHGV-0071580_38	eggNOG-mapper	12417.Q9T1H2_9CAUD	NA	NA
UHGV-0071580_39	UniRef90	UniRef90_A0A1G9D2T4	Phage_int_SAM_5 domain-containing protein	NA
UHGV-0071580_39	eggNOG-mapper	349123.Lreu23DRAFT_3891	Belongs to the 'phage' integrase family	NA
UHGV-0071580_39	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0071580_40	PHROG	phrog_11108	NA	unknown function
UHGV-0071580_40	eggNOG-mapper	97137.C821_00674	NA	NA
UHGV-0071580_42	PHROG	phrog_35711	NA	unknown function
UHGV-0071580_43	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0071580_43	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0071580_43	UniRef90	UniRef90_A0A6M3BER2	Xre family antitoxin component	NA
UHGV-0071580_43	eggNOG-mapper	363555.Q20DG0_9CAUD	sequence-specific DNA binding	NA
UHGV-0071580_43	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-0071580_43	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0071580_44	PHROG	phrog_27865	NA	unknown function
UHGV-0071580_45	PHROG	phrog_428	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0071580_45	UniRef90	UniRef90_A0A8A8L6N0	Helix-turn-helix domain-containing protein	NA
UHGV-0071580_45	eggNOG-mapper	1423758.BN55_04170	NA	NA
UHGV-0071580_45	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-0071580_45	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0071580_45	Structural annotation	COG3355	NA	NA
UHGV-0071580_48	PHROG	phrog_7989	NA	unknown function
UHGV-0071580_48	eggNOG-mapper	12417.Q9T1I6_9CAUD	NA	NA
UHGV-0071580_50	PHROG	phrog_750	NA	unknown function
UHGV-0071580_50	eggNOG-mapper	1158614.I592_00583	NA	NA
UHGV-0071580_50	Structural annotation	PF03444, COG5045	NA	NA
UHGV-0071580_51	PHROG	phrog_643	transcriptional regulator	transcription regulation
UHGV-0071580_51	UniRef90	UniRef90_UPI0015CDF491	NA	NA
UHGV-0071580_51	eggNOG-mapper	936140.AEOT01000014_gene1319	NA	NA
UHGV-0071580_51	Structural annotation	PF11195	NA	NA
UHGV-0071580_52	PHROG	phrog_6634	NA	unknown function
UHGV-0071580_52	UniRef90	UniRef90_A0A1V0NIA4	NA	NA
UHGV-0071580_52	eggNOG-mapper	1423775.BAMN01000014_gene786	NA	NA
UHGV-0071580_53	PHROG	phrog_38143	NA	unknown function
UHGV-0071580_54	PHROG	phrog_8594	NA	unknown function
UHGV-0071580_54	eggNOG-mapper	1423758.BN55_04360	NA	NA
UHGV-0071580_55	PHROG	phrog_463	anti-repressor	transcription regulation
UHGV-0071580_55	UniRef90	UniRef90_A0A8A6AZZ1	ORF6C domain-containing protein	NA
UHGV-0071580_55	eggNOG-mapper	1423758.BN55_04355	BRO family, N-terminal domain	NA
UHGV-0071580_55	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0071580_55	Pfam	PF10552	ORF6C domain	ORF6C
UHGV-0071580_55	COG	COG3617	Prophage antirepressor	NA
UHGV-0071580_55	Structural annotation	PF10552, PF02498, TIGR02681, COG3617	NA	NA
UHGV-0071580_58	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0071580_58	UniRef90	UniRef90_A0A833CGL1	Helix-turn-helix transcriptional regulator	NA
UHGV-0071580_58	eggNOG-mapper	349123.Lreu23DRAFT_3080	Helix-turn-helix XRE-family like proteins	NA
UHGV-0071580_58	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0071580_58	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0071580_59	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0071580_59	UniRef90	UniRef90_A0A833CGD4	Helix-turn-helix transcriptional regulator	NA
UHGV-0071580_59	eggNOG-mapper	226185.EF_2852	Helix-turn-helix XRE-family like proteins	NA
UHGV-0071580_59	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0071580_59	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0071580_59	Structural annotation	PF12844, NF041951, COG3655	NA	NA
UHGV-0071580_60	UniRef90	UniRef90_A0A366KHH8	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0071580_60	eggNOG-mapper	1423755.BAML01000004_gene414	IrrE N-terminal-like domain	NA
UHGV-0071580_60	Structural annotation	PF13058, MF_00745, NF003339, COG2856	NA	NA
UHGV-0071580_61	PHROG	phrog_1412	antitoxin mazE-like	moron, auxiliary metabolic gene and host takeover
UHGV-0071580_61	eggNOG-mapper	1605.Lani381_0417	PemK-like, MazF-like toxin of type II toxin-antitoxin system	NA
UHGV-0071580_61	COG	COG2337	mRNA-degrading endonuclease MazF, toxin component of the MazEF toxin-antitoxin module	NA
UHGV-0071580_62	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0071580_62	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0071580_62	UniRef90	UniRef90_UPI001BFF841B	helix-turn-helix domain-containing protein	NA
UHGV-0071580_62	eggNOG-mapper	1423758.BN55_04345	Peptidase S24-like	NA
UHGV-0071580_62	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0071580_62	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0071580_62	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0071580_62	Structural annotation	PF00717, PF01381, MF_00015, TIGR00498, COG1974	NA	NA
UHGV-0071580_63	PHROG	phrog_1412	antitoxin mazE-like	moron, auxiliary metabolic gene and host takeover
UHGV-0071580_63	UniRef90	UniRef90_C2E710	Putative toxin-antitoxin system, toxin component, MazF family	NA
UHGV-0071580_63	eggNOG-mapper	1605.Lani381_0418	PemK-like, MazF-like toxin of type II toxin-antitoxin system	NA
UHGV-0071580_63	Pfam	PF02452	PemK-like, MazF-like toxin of type II toxin-antitoxin system	PemK_toxin
UHGV-0071580_63	COG	COG2337	mRNA-degrading endonuclease MazF, toxin component of the MazEF toxin-antitoxin module	NA
UHGV-0071580_63	Structural annotation	PF02452, NF007386, COG2337	NA	NA
UHGV-0071580_68	KOfam	K14059	int; integrase	NA
UHGV-0071580_68	PHROG	phrog_1	integrase	integration and excision
UHGV-0071580_68	UniRef90	UniRef90_I7KHP1	Integrase	NA
UHGV-0071580_68	eggNOG-mapper	1423758.BN55_04135	Belongs to the 'phage' integrase family	NA
UHGV-0071580_68	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0071580_68	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0071580_68	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0071580_68	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA