UHGV-0071668

Genome information

Genome length 36,075 bps

CDS count 50

Completeness 97.12% (high-quality)

geNomad score 0.9800

Prediction confidence Confident

Genome information
Genome ID	UHGV-0071668
vOTU ID	vOTU-010301
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_125266
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	97.12% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9800
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	50.33
Jumbo phage	No

Genome content
Genome length	36,075 bps
GC content	34.95%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	50
CDS density	90.43%
Average CDS length	655.02 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0071668_1	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0071668_1	PHROG	phrog_9611	endolysin	lysis
UHGV-0071668_1	UniRef90	UniRef90_A0A352SK06	N-acetylmuramoyl-L-alanine amidase domain-containing protein	NA
UHGV-0071668_1	eggNOG-mapper	1042156.CXIVA_01560	N-Acetylmuramoyl-L-alanine amidase	NA
UHGV-0071668_1	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0071668_1	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-0071668_1	Structural annotation	PF01510, MF_04111, NF008758, COG5632	NA	NA
UHGV-0071668_2	PHROG	phrog_199	holin	lysis
UHGV-0071668_2	UniRef90	UniRef90_UPI000E4FBD87	phage holin family protein	NA
UHGV-0071668_2	eggNOG-mapper	411462.DORLON_00766	Bacteriophage holin family	NA
UHGV-0071668_2	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0071668_2	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0071668_2	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0071668_2	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0071668_5	PHROG	phrog_6616	tail protein	tail
UHGV-0071668_5	UniRef90	UniRef90_A0A0J1FXD9	Peptidase S74 domain-containing protein	NA
UHGV-0071668_5	eggNOG-mapper	1121866.AUGK01000003_gene1439	Phage minor structural protein	NA
UHGV-0071668_5	COG	COG4926	Phage-related protein	NA
UHGV-0071668_5	Structural annotation	PF05113, NF033848, COG3500	NA	NA
UHGV-0071668_6	PHROG	phrog_1194	NA	unknown function
UHGV-0071668_6	eggNOG-mapper	33035.JPJF01000093_gene2242	NA	NA
UHGV-0071668_6	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0071668_7	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0071668_7	UniRef90	UniRef90_A0A1C5PIN9	Phage-related protein	NA
UHGV-0071668_7	eggNOG-mapper	33035.JPJF01000093_gene2243	phage tail tape measure protein	NA
UHGV-0071668_7	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0071668_7	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0071668_8	PHROG	phrog_8355	NA	unknown function
UHGV-0071668_8	UniRef90	UniRef90_UPI001F2CFAB2	bacteriophage Gp15 family protein	NA
UHGV-0071668_8	eggNOG-mapper	742740.HMPREF9474_03513	NA	NA
UHGV-0071668_9	PHROG	phrog_8300	NA	unknown function
UHGV-0071668_9	eggNOG-mapper	1282664.H354_06701	NA	NA
UHGV-0071668_9	Structural annotation	PF06854	NA	NA
UHGV-0071668_10	PHROG	phrog_820	major tail protein	tail
UHGV-0071668_10	eggNOG-mapper	33035.JPJF01000093_gene2246	NA	NA
UHGV-0071668_10	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0071668_11	PHROG	phrog_2595	head-tail connector protein	connector
UHGV-0071668_11	UniRef90	UniRef90_UPI001D0627B3	minor capsid protein	NA
UHGV-0071668_11	eggNOG-mapper	1282664.H354_06686	NA	NA
UHGV-0071668_11	Pfam	PF12691	Bacteriophage minor capsid protein	Minor_capsid_3
UHGV-0071668_11	Structural annotation	PF12691, COG5003	NA	NA
UHGV-0071668_12	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0071668_12	eggNOG-mapper	742740.HMPREF9474_03509	NA	NA
UHGV-0071668_12	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0071668_13	PHROG	phrog_8710	NA	unknown function
UHGV-0071668_13	eggNOG-mapper	1304866.K413DRAFT_0782	NA	NA
UHGV-0071668_13	Structural annotation	PF10665, TIGR01563, COG5614	NA	NA
UHGV-0071668_14	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0071668_14	eggNOG-mapper	742740.HMPREF9474_03507	NA	NA
UHGV-0071668_15	PHROG	phrog_1378	NA	unknown function
UHGV-0071668_15	eggNOG-mapper	552396.HMPREF0863_01636	NA	NA
UHGV-0071668_16	PHROG	phrog_422	major head protein	head and packaging
UHGV-0071668_16	UniRef90	UniRef90_A0A413RCT9	Capsid protein	NA
UHGV-0071668_16	eggNOG-mapper	552396.HMPREF0863_01635	NA	NA
UHGV-0071668_16	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0071668_17	PHROG	phrog_2303	head scaffolding protein	head and packaging
UHGV-0071668_17	eggNOG-mapper	483218.BACPEC_01156	NA	NA
UHGV-0071668_19	PHROG	phrog_3675	NA	unknown function
UHGV-0071668_19	UniRef90	UniRef90_A0A3E2WML7	Dihydrolipoyl dehydrogenase	NA
UHGV-0071668_19	eggNOG-mapper	585501.HMPREF6123_0838	YjcQ protein	NA
UHGV-0071668_19	Pfam	PF09639	YjcQ protein	YjcQ
UHGV-0071668_19	Structural annotation	PF09639, TIGR04176, COG2345	NA	NA
UHGV-0071668_20	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-0071668_20	UniRef90	UniRef90_UPI000E473058	NA	NA
UHGV-0071668_20	eggNOG-mapper	397290.C810_05229	NA	NA
UHGV-0071668_20	Structural annotation	PF14359	NA	NA
UHGV-0071668_21	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0071668_21	UniRef90	UniRef90_A0A1C5VPR8	ATPase involved in DNA repair	NA
UHGV-0071668_21	eggNOG-mapper	33035.JPJF01000093_gene2255	NA	NA
UHGV-0071668_21	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0071668_21	Pfam	PF18810	phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease2	PBECR2
UHGV-0071668_21	COG	COG5585	Putative phage head morphogenesis protein, F of phage Mu or gp7 of SPP1	NA
UHGV-0071668_22	PHROG	phrog_25639	NA	unknown function
UHGV-0071668_22	eggNOG-mapper	742740.HMPREF9474_03502	NA	NA
UHGV-0071668_23	PHROG	phrog_533	portal protein	head and packaging
UHGV-0071668_23	UniRef90	UniRef90_A0A413RCQ7	Phage portal protein	NA
UHGV-0071668_23	eggNOG-mapper	33035.JPJF01000093_gene2257	NA	NA
UHGV-0071668_23	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0071668_24	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0071668_24	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0071668_24	UniRef90	UniRef90_A0A413RCQ1	Terminase	NA
UHGV-0071668_24	eggNOG-mapper	552396.HMPREF0863_01628	Phage terminase, large subunit, PBSX family	NA
UHGV-0071668_24	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0071668_24	COG	COG1783	Phage terminase large subunit	NA
UHGV-0071668_24	Structural annotation	PF03237, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0071668_25	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0071668_25	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0071668_25	UniRef90	UniRef90_A0A413RCV1	Terminase small subunit	NA
UHGV-0071668_25	eggNOG-mapper	1256908.HMPREF0373_00489	Terminase small subunit	NA
UHGV-0071668_25	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0071668_25	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0071668_25	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0071668_26	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0071668_26	UniRef90	UniRef90_UPI001C010EDC	sigma-70 family RNA polymerase sigma factor	NA
UHGV-0071668_29	PHROG	phrog_20593	NA	unknown function
UHGV-0071668_30	eggNOG-mapper	411461.DORFOR_01156	NA	NA
UHGV-0071668_30	Structural annotation	PF06319, NF033832, COG5321	NA	NA
UHGV-0071668_31	PHROG	phrog_15198	NA	unknown function
UHGV-0071668_31	UniRef90	UniRef90_A0A416VUN0	NA	NA
UHGV-0071668_31	eggNOG-mapper	742723.HMPREF9477_00919	NA	NA
UHGV-0071668_31	Pfam	PF04448	NA	DUF551
UHGV-0071668_32	PHROG	phrog_5051	NA	unknown function
UHGV-0071668_33	PHROG	phrog_15198	NA	unknown function
UHGV-0071668_33	UniRef90	UniRef90_A0A373VSI6	NA	NA
UHGV-0071668_33	Pfam	PF04448	NA	DUF551
UHGV-0071668_34	PHROG	phrog_17690	NA	unknown function
UHGV-0071668_34	UniRef90	UniRef90_A0A6L5XWF4	3-dehydroquinate synthase	NA
UHGV-0071668_34	eggNOG-mapper	33035.JPJF01000123_gene2433	NA	NA
UHGV-0071668_36	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0071668_36	PHROG	phrog_23072	DNA methyltransferase	other
UHGV-0071668_36	UniRef90	UniRef90_A0A3R6PIU8	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0071668_36	eggNOG-mapper	1235800.C819_02255	C-5 cytosine-specific DNA methylase	NA
UHGV-0071668_36	PADLOC	DrmMII_00008	DrmMII	DISARM
UHGV-0071668_36	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0071668_36	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0071668_37	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0071668_37	PHROG	phrog_29443	NA	unknown function
UHGV-0071668_37	UniRef90	UniRef90_A0A318EQP9	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0071668_37	eggNOG-mapper	1235800.C819_02255	C-5 cytosine-specific DNA methylase	NA
UHGV-0071668_37	PADLOC	MTase_II_00020	Type II methyltransferase	RM
UHGV-0071668_37	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0071668_37	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0071668_37	Structural annotation	PF00145, MF_00786, TIGR00675, COG0270	NA	NA
UHGV-0071668_39	Structural annotation	PF20531	NA	NA
UHGV-0071668_40	PHROG	phrog_2562	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0071668_40	UniRef90	UniRef90_R5ZK48	NA	NA
UHGV-0071668_40	eggNOG-mapper	97138.C820_00626	NA	NA
UHGV-0071668_40	Pfam	PF14297	Lin1244/Lin1753-like, N-terminal	Lin1244_N
UHGV-0071668_40	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0071668_40	Structural annotation	PF14297	NA	NA
UHGV-0071668_41	PHROG	phrog_589	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0071668_41	UniRef90	UniRef90_D4MWK8	HNH endonuclease	NA
UHGV-0071668_41	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0071668_42	PHROG	phrog_244	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0071668_42	eggNOG-mapper	1280692.AUJL01000044_gene2344	NA	NA
UHGV-0071668_42	Structural annotation	PF01870, MF_01490, NF040854, COG1591	NA	NA
UHGV-0071668_43	Structural annotation	PF21715, COG1654	NA	NA
UHGV-0071668_44	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0071668_44	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0071668_44	UniRef90	UniRef90_UPI000BE24B78	recombinase RecT	NA
UHGV-0071668_44	eggNOG-mapper	742765.HMPREF9457_02107	RecT family	NA
UHGV-0071668_44	Pfam	PF03837	RecT family	RecT
UHGV-0071668_44	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-0071668_44	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0071668_44	Structural annotation	PF03837, TIGR00616, COG3723	NA	NA
UHGV-0071668_45	PHROG	phrog_674	NA	unknown function
UHGV-0071668_45	UniRef90	UniRef90_A0A413RZX0	NA	NA
UHGV-0071668_45	eggNOG-mapper	742740.HMPREF9474_03487	NA	NA
UHGV-0071668_45	Pfam	PF07083	NA	DUF1351
UHGV-0071668_45	Structural annotation	PF07083	NA	NA
UHGV-0071668_46	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0071668_46	UniRef90	UniRef90_UPI0019150417	YqaJ viral recombinase family protein	NA
UHGV-0071668_46	eggNOG-mapper	1095750.HMPREF9970_1677	YqaJ viral recombinase family	NA
UHGV-0071668_46	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-0071668_46	NCBIFam	TIGR03033.1	putative phage-type endonuclease	NA
UHGV-0071668_46	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-0071668_46	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-0071668_48	UniRef90	UniRef90_UPI000E52936A	helix-turn-helix domain-containing protein	NA
UHGV-0071668_48	eggNOG-mapper	887929.HMP0721_1290	Helix-turn-helix domain of resolvase	NA
UHGV-0071668_48	Pfam	PF05339	NA	DUF739
UHGV-0071668_48	Structural annotation	PF05339, NF041951, COG3655	NA	NA
UHGV-0071668_49	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0071668_49	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0071668_49	UniRef90	UniRef90_R5ZK71	Putative repressor LexA	NA
UHGV-0071668_49	eggNOG-mapper	478749.BRYFOR_07570	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	NA
UHGV-0071668_49	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0071668_49	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0071668_49	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0071668_49	Structural annotation	PF01381, PF00717, MF_00015, NF041951, COG1396	NA	NA
UHGV-0071668_50	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0071668_50	PHROG	phrog_95	integrase	integration and excision
UHGV-0071668_50	UniRef90	UniRef90_R5YR86	Site-specific recombinase	NA
UHGV-0071668_50	eggNOG-mapper	411462.DORLON_00823	Resolvase, N terminal domain	NA
UHGV-0071668_50	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0071668_50	Pfam	PF07508	Recombinase	Recombinase
UHGV-0071668_50	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0071668_50	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0071668_50	Structural annotation	PF07508, PF00239, NF041201, COG1961	NA	NA