UHGV-0071796

Genome information

Genome length 30,951 bps

CDS count 56

Completeness 72.26% (medium-quality)

geNomad score 0.9736

Prediction confidence Confident

Genome information
Genome ID	UHGV-0071796
vOTU ID	vOTU-023757
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_115600
BioSample	NA
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	72.26% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	36
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9736
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	71.74
Jumbo phage	No

Genome content
Genome length	30,951 bps
GC content	34.65%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	56
CDS density	87.48%
Average CDS length	488.36 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0071796_1	KOfam	K14059	int; integrase	NA
UHGV-0071796_1	PHROG	phrog_1	integrase	integration and excision
UHGV-0071796_1	UniRef90	UniRef90_A2RN22	Phage integrase	NA
UHGV-0071796_1	eggNOG-mapper	416870.llmg_2142	Belongs to the 'phage' integrase family	NA
UHGV-0071796_1	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0071796_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0071796_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0071796_1	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0071796_2	PHROG	phrog_7823	NA	unknown function
UHGV-0071796_2	eggNOG-mapper	482234.SCAZ3_03520	NA	NA
UHGV-0071796_3	PHROG	phrog_87	metallo-protease	other
UHGV-0071796_3	UniRef90	UniRef90_UPI001F06756D	zinc peptidase	NA
UHGV-0071796_3	eggNOG-mapper	416870.llmg_2140	Zn peptidase	NA
UHGV-0071796_3	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0071796_3	Structural annotation	PF13058, MF_00745, NF003339, COG2856	NA	NA
UHGV-0071796_4	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0071796_4	PHROG	phrog_35297	CI-like repressor	transcription regulation
UHGV-0071796_4	UniRef90	UniRef90_T0TRT4	Repressor	NA
UHGV-0071796_4	eggNOG-mapper	114416.Q8LTS6_9CAUD	sequence-specific DNA binding	NA
UHGV-0071796_4	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0071796_6	PHROG	phrog_2232	NA	unknown function
UHGV-0071796_6	UniRef90	UniRef90_UPI001C1FBFB9	Abi-alpha family protein	NA
UHGV-0071796_6	eggNOG-mapper	1005704.HMPREF9968_1925	NA	NA
UHGV-0071796_6	Pfam	PF14337	Abortive infection alpha	Abi_alpha
UHGV-0071796_6	Structural annotation	PF14337, TIGR03899	NA	NA
UHGV-0071796_7	UniRef90	UniRef90_A0A0B8QZH1	Predicted transcriptional regulators	NA
UHGV-0071796_7	eggNOG-mapper	1229751.R9QLK3_9CAUD	NA	NA
UHGV-0071796_7	Pfam	PF05339	NA	DUF739
UHGV-0071796_8	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0071796_8	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0071796_8	UniRef90	UniRef90_A0A1B1IMQ3	Antirepressor	NA
UHGV-0071796_8	eggNOG-mapper	416870.llmg_2134	BRO family, N-terminal domain	NA
UHGV-0071796_8	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0071796_8	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0071796_8	COG	COG3617	Prophage antirepressor	NA
UHGV-0071796_8	Structural annotation	PF02498, PF03374, TIGR02681, COG3645, COG3561	NA	NA
UHGV-0071796_9	PHROG	phrog_10458	NA	unknown function
UHGV-0071796_9	UniRef90	UniRef90_UPI001F055759	transcriptional regulator	NA
UHGV-0071796_9	Structural annotation	PF20063, NF033499	NA	NA
UHGV-0071796_10	PHROG	phrog_643	transcriptional regulator	transcription regulation
UHGV-0071796_10	UniRef90	UniRef90_A0A649V2U3	DNA-binding protein	NA
UHGV-0071796_10	eggNOG-mapper	416870.llmg_2132	NA	NA
UHGV-0071796_10	Structural annotation	PF11195	NA	NA
UHGV-0071796_11	PHROG	phrog_585	NA	unknown function
UHGV-0071796_11	UniRef90	UniRef90_A0A649V139	DNA-binding protein	NA
UHGV-0071796_11	eggNOG-mapper	416870.llmg_2131	NA	NA
UHGV-0071796_11	Pfam	PF10711	NA	DUF2513
UHGV-0071796_11	Structural annotation	PF10711, TIGR04176, COG1695	NA	NA
UHGV-0071796_13	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0071796_13	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0071796_13	UniRef90	UniRef90_A0A7X1Z837	Recombinase RecT	NA
UHGV-0071796_13	eggNOG-mapper	272623.L53019	Recombinational DNA repair protein (RecE pathway)	NA
UHGV-0071796_13	Pfam	PF03837	RecT family	RecT
UHGV-0071796_13	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-0071796_13	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0071796_13	Structural annotation	PF03837, TIGR00616, COG3723	NA	NA
UHGV-0071796_14	PHROG	phrog_1227	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0071796_14	UniRef90	UniRef90_A0A1E7G637	NA	NA
UHGV-0071796_14	eggNOG-mapper	272623.L53819	NA	NA
UHGV-0071796_14	Pfam	PF12684	NA	DUF3799
UHGV-0071796_14	COG	COG1074	3'-5' helicase subunit RecB of the DNA repair enzyme RecBCD (exonuclease V)	NA
UHGV-0071796_14	Structural annotation	PF12684, TIGR01896, COG4343	NA	NA
UHGV-0071796_15	PHROG	phrog_1163	NA	unknown function
UHGV-0071796_15	UniRef90	UniRef90_A0A0M2ZQJ2	Phage replisome organizer, N-terminal region	NA
UHGV-0071796_15	eggNOG-mapper	1178540.BA70_18625	Conserved phage C-terminus (Phg_2220_C)	NA
UHGV-0071796_15	Pfam	PF09681	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
UHGV-0071796_15	Pfam	PF09524	Conserved phage C-terminus (Phg_2220_C)	Phg_2220_C
UHGV-0071796_15	NCBIFam	TIGR01714.1	phage replisome organizer, putative, N-terminal region	NA
UHGV-0071796_15	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0071796_15	Structural annotation	PF09681, PF09524, TIGR01714, TIGR02220, COG3756	NA	NA
UHGV-0071796_16	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0071796_16	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0071796_16	UniRef90	UniRef90_A0A2X0R0X1	Primosomal protein DnaI	NA
UHGV-0071796_16	eggNOG-mapper	43685.Q38098_BPR1T	IstB-like ATP binding protein	NA
UHGV-0071796_16	Pfam	PF07319	Primosomal protein DnaI N-terminus	DnaI_N
UHGV-0071796_16	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-0071796_16	Structural annotation	PF01695, MF_00377, NF006505, COG1484	NA	NA
UHGV-0071796_17	PHROG	phrog_2108	NA	unknown function
UHGV-0071796_17	UniRef90	UniRef90_Q9AZV3	Orf18	NA
UHGV-0071796_18	PHROG	phrog_190	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0071796_18	UniRef90	UniRef90_UPI001C1F9808	NA	NA
UHGV-0071796_18	eggNOG-mapper	272623.L47020	NA	NA
UHGV-0071796_18	Pfam	PF06356	NA	DUF1064
UHGV-0071796_18	Structural annotation	PF06356, NF033179	NA	NA
UHGV-0071796_19	PHROG	phrog_3109	NA	unknown function
UHGV-0071796_19	UniRef90	UniRef90_A0A6B3SE33	NA	NA
UHGV-0071796_19	eggNOG-mapper	416870.llmg_0812	NA	NA
UHGV-0071796_19	Pfam	PF06275	NA	DUF1031
UHGV-0071796_19	Structural annotation	PF06275	NA	NA
UHGV-0071796_20	PHROG	phrog_16633	NA	unknown function
UHGV-0071796_20	UniRef90	UniRef90_Q9AZP4	Orf18	NA
UHGV-0071796_21	PHROG	phrog_4149	NA	unknown function
UHGV-0071796_21	UniRef90	UniRef90_Q9AZP3	Orf19	NA
UHGV-0071796_21	Pfam	PF04936	NA	DUF658
UHGV-0071796_22	PHROG	phrog_98	NA	unknown function
UHGV-0071796_22	UniRef90	UniRef90_A0A199YQC9	YopX domain-containing protein	NA
UHGV-0071796_22	eggNOG-mapper	35241.Q9XJF2_BPTU2	YopX protein	NA
UHGV-0071796_22	Pfam	PF09643	YopX protein	YopX
UHGV-0071796_22	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-0071796_22	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0071796_23	PHROG	phrog_16544	excisionase	integration and excision
UHGV-0071796_23	UniRef90	UniRef90_Q9AZU6	Orf26	NA
UHGV-0071796_23	eggNOG-mapper	272623.L44240	NA	NA
UHGV-0071796_23	dbAPIS	APIS035	Broad-spectrum counter-defense.	NA
UHGV-0071796_24	PHROG	phrog_121	NA	unknown function
UHGV-0071796_24	UniRef90	UniRef90_A0A1V0NID2	NA	NA
UHGV-0071796_24	eggNOG-mapper	1229751.R9QMU4_9CAUD	NA	NA
UHGV-0071796_24	Pfam	PF07852	NA	DUF1642
UHGV-0071796_24	Structural annotation	PF07852	NA	NA
UHGV-0071796_25	KOfam	K01520	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	NA
UHGV-0071796_25	PHROG	phrog_135	dUTPase	DNA, RNA and nucleotide metabolism
UHGV-0071796_25	UniRef90	UniRef90_Q9AZP1	dUTPase	NA
UHGV-0071796_25	eggNOG-mapper	416870.llmg_0816	This enzyme is involved in nucleotide metabolism it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA	NA
UHGV-0071796_25	Pfam	PF00692	dUTPase	dUTPase
UHGV-0071796_25	NCBIFam	TIGR00576.1	dUTP diphosphatase	NA
UHGV-0071796_25	COG	COG0756	dUTP pyrophosphatase (dUTPase)	NA
UHGV-0071796_25	Structural annotation	PF00692, MF_00116, NF010561, COG0756	NA	NA
UHGV-0071796_26	PHROG	phrog_4000	NA	unknown function
UHGV-0071796_26	UniRef90	UniRef90_A0A0M2ZQI1	KaiC domain protein, PAE1156 family	NA
UHGV-0071796_28	PHROG	phrog_3808	NA	unknown function
UHGV-0071796_28	UniRef90	UniRef90_A0A0V8E0T7	NA	NA
UHGV-0071796_29	PHROG	phrog_803	host nuclease inhibitor	moron, auxiliary metabolic gene and host takeover
UHGV-0071796_29	UniRef90	UniRef90_S6FHZ7	NA	NA
UHGV-0071796_29	eggNOG-mapper	1229517.AMFD01000018_gene199	NA	NA
UHGV-0071796_30	PHROG	phrog_23614	NA	unknown function
UHGV-0071796_31	PHROG	phrog_2670	NA	unknown function
UHGV-0071796_31	UniRef90	UniRef90_UPI00071E3E8D	NA	NA
UHGV-0071796_31	Pfam	PF07874	NA	DUF1660
UHGV-0071796_31	Structural annotation	NF041603	NA	NA
UHGV-0071796_32	PHROG	phrog_9584	NA	unknown function
UHGV-0071796_33	PHROG	phrog_9438	anti-repressor	transcription regulation
UHGV-0071796_33	UniRef90	UniRef90_Q38109	ORF23	NA
UHGV-0071796_33	eggNOG-mapper	1399942.U3PCU6_9CAUD	DNA binding	NA
UHGV-0071796_33	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0071796_34	PHROG	phrog_4298	NA	unknown function
UHGV-0071796_35	PHROG	phrog_25226	NA	unknown function
UHGV-0071796_35	UniRef90	UniRef90_A0A0V8BVB4	NA	NA
UHGV-0071796_36	PHROG	phrog_26874	NA	unknown function
UHGV-0071796_37	PHROG	phrog_30014	NA	unknown function
UHGV-0071796_37	UniRef90	UniRef90_A0A0H1RVM8	Phage transcriptional regulator, ArpU family	NA
UHGV-0071796_38	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0071796_38	PHROG	phrog_5956	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0071796_38	UniRef90	UniRef90_A0A084ABI8	HNH endonuclease	NA
UHGV-0071796_38	eggNOG-mapper	1158610.UC3_02358	HNH nucleases	NA
UHGV-0071796_38	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0071796_38	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0071796_39	PHROG	phrog_2343	terminase small subunit	head and packaging
UHGV-0071796_39	UniRef90	UniRef90_A0A0V8EAK2	NA	NA
UHGV-0071796_39	eggNOG-mapper	1231377.C426_0906	NA	NA
UHGV-0071796_39	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0071796_40	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0071796_40	UniRef90	UniRef90_A0A0V8EAT6	Phage terminase large subunit	NA
UHGV-0071796_40	eggNOG-mapper	1231377.C426_0905	Phage Terminase	NA
UHGV-0071796_40	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0071796_40	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0071796_40	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0071796_40	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0071796_41	PHROG	phrog_12	portal protein	head and packaging
UHGV-0071796_41	UniRef90	UniRef90_A0A0V8EB61	Portal protein phage associated	NA
UHGV-0071796_41	eggNOG-mapper	423476.A3F643_9CAUD	Phage portal protein	NA
UHGV-0071796_41	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0071796_41	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0071796_42	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0071796_42	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0071796_42	UniRef90	UniRef90_A0A0V8BEY0	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0071796_42	eggNOG-mapper	1231377.C426_0903	Belongs to the peptidase S14 family	NA
UHGV-0071796_42	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0071796_42	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0071796_42	Structural annotation	PF00574, MF_00444, NF011089, COG0740	NA	NA
UHGV-0071796_43	PHROG	phrog_10	major head protein	head and packaging
UHGV-0071796_43	UniRef90	UniRef90_A0A0V8BEL0	NA	NA
UHGV-0071796_43	eggNOG-mapper	1231377.C426_0902	Phage capsid family	NA
UHGV-0071796_43	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0071796_43	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0071796_43	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0071796_43	Structural annotation	PF05065, TIGR01554, COG4653	NA	NA
UHGV-0071796_44	eggNOG-mapper	1231377.C426_0902	Phage capsid family	NA
UHGV-0071796_44	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0071796_45	PHROG	phrog_933	NA	unknown function
UHGV-0071796_46	PHROG	phrog_749	NA	unknown function
UHGV-0071796_46	UniRef90	UniRef90_A0A1V0P102	NA	NA
UHGV-0071796_46	eggNOG-mapper	1121864.OMO_01323	NA	NA
UHGV-0071796_47	UniRef90	UniRef90_A0A0H1RNL7	NA	NA
UHGV-0071796_47	eggNOG-mapper	999425.HMPREF9186_02038	NA	NA
UHGV-0071796_47	Structural annotation	PF19586, TIGR01563, COG5614	NA	NA
UHGV-0071796_48	UniRef90	UniRef90_A0A5C5BGY4	HK97 gp10 family phage protein	NA
UHGV-0071796_48	eggNOG-mapper	1423816.BACQ01000026_gene939	NA	NA
UHGV-0071796_48	Structural annotation	PF04883, TIGR01725	NA	NA
UHGV-0071796_49	PHROG	phrog_78	tail terminator	connector
UHGV-0071796_49	UniRef90	UniRef90_A0A0V8EA63	NA	NA
UHGV-0071796_49	eggNOG-mapper	1231377.C426_0898	NA	NA
UHGV-0071796_49	Structural annotation	PF05657	NA	NA
UHGV-0071796_50	PHROG	phrog_88	major tail protein	tail
UHGV-0071796_50	UniRef90	UniRef90_A0A0A7T0G5	Phage major tail protein	NA
UHGV-0071796_50	eggNOG-mapper	1231377.C426_0897	Phage tail tube protein	NA
UHGV-0071796_50	Pfam	PF04630	Phage tail tube protein	Phage_TTP_1
UHGV-0071796_50	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0071796_50	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0071796_51	PHROG	phrog_187	head-tail adaptor	connector
UHGV-0071796_51	UniRef90	UniRef90_A0A0A7T228	NA	NA
UHGV-0071796_51	eggNOG-mapper	1158610.UC3_02345	NA	NA
UHGV-0071796_51	Structural annotation	PF06894, TIGR01674	NA	NA
UHGV-0071796_52	Pfam	PF13783	NA	DUF4177
UHGV-0071796_53	PHROG	phrog_1293	tail length tape measure protein	tail
UHGV-0071796_53	UniRef90	UniRef90_UPI001E61420C	phage tail tape measure protein	NA
UHGV-0071796_53	eggNOG-mapper	1231377.C426_0893	Phage tail tape measure protein, TP901 family	NA
UHGV-0071796_53	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0071796_53	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0071796_53	COG	COG5283	Phage-related tail protein	NA
UHGV-0071796_54	PHROG	phrog_21863	NA	unknown function
UHGV-0071796_54	UniRef90	UniRef90_D2BLB2	NA	NA
UHGV-0071796_55	UniRef90	UniRef90_D2BK24	NA	NA
UHGV-0071796_55	eggNOG-mapper	1321372.AQQB01000081_gene233	NA	NA