UHGV-0071805

Genome information

Genome length 31,979 bps

CDS count 53

Completeness 90.89% (high-quality)

geNomad score 0.9393

Prediction confidence Confident

Genome information
Genome ID	UHGV-0071805
vOTU ID	vOTU-063266
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_130838
BioSample	SAMEA2737743
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	90.89% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	16
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9393
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	38.05
Jumbo phage	No

Genome content
Genome length	31,979 bps
GC content	35.92%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	53
CDS density	89.26%
Average CDS length	543.11 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0071805_2	UniRef90	UniRef90_A0A1C6HHE5	BppU_N domain-containing protein	NA
UHGV-0071805_2	Structural annotation	PF10651, PF00541, NF040788	NA	NA
UHGV-0071805_3	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0071805_3	UniRef90	UniRef90_A0A1G5CPD2	Phage minor structural protein, N-terminal region	NA
UHGV-0071805_3	eggNOG-mapper	1567011.A0A0A7RUI9_9VIRU	N-acetylmuramoyl-L-alanine amidase activity	NA
UHGV-0071805_3	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0071805_3	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0071805_4	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0071805_4	UniRef90	UniRef90_UPI000BB5198E	phage tail family protein	NA
UHGV-0071805_4	eggNOG-mapper	272623.L63101	phage tail	NA
UHGV-0071805_4	COG	COG4722	Phage-related protein YomH	NA
UHGV-0071805_4	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0071805_5	KOfam	K20282	GCC2; GRIP and coiled-coil domain-containing protein 2	NA
UHGV-0071805_5	PHROG	phrog_5218	NA	unknown function
UHGV-0071805_5	UniRef90	UniRef90_UPI000E474EFE	phage tail tape measure protein	NA
UHGV-0071805_5	eggNOG-mapper	999413.HMPREF1094_02001	Phage-related minor tail protein	NA
UHGV-0071805_5	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0071805_5	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0071805_5	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0071805_7	Structural annotation	PF11836	NA	NA
UHGV-0071805_8	PHROG	phrog_88	major tail protein	tail
UHGV-0071805_8	UniRef90	UniRef90_A0A1G5CNS8	Phage major tail protein, phi13 family	NA
UHGV-0071805_8	eggNOG-mapper	411470.RUMGNA_02319	COG NOG11304 non supervised orthologous group	NA
UHGV-0071805_8	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0071805_8	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-0071805_11	eggNOG-mapper	698758.AXY_02180	NA	NA
UHGV-0071805_11	Structural annotation	PF05657, MF_00281, COG0016	NA	NA
UHGV-0071805_12	PHROG	phrog_19734	NA	unknown function
UHGV-0071805_12	eggNOG-mapper	86416.Clopa_0343	NA	NA
UHGV-0071805_12	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0071805_13	PHROG	phrog_749	NA	unknown function
UHGV-0071805_13	UniRef90	UniRef90_A0A1G5CMX8	Phage gp6-like head-tail connector protein	NA
UHGV-0071805_13	eggNOG-mapper	349161.Dred_2603	NA	NA
UHGV-0071805_14	PHROG	phrog_10	major head protein	head and packaging
UHGV-0071805_14	UniRef90	UniRef90_A0A412ULW9	Phage major capsid protein	NA
UHGV-0071805_14	eggNOG-mapper	1211817.CCAT010000053_gene2132	Phage capsid family	NA
UHGV-0071805_14	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0071805_14	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0071805_14	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0071805_14	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0071805_15	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0071805_15	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0071805_15	UniRef90	UniRef90_A0A412ULU1	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0071805_15	eggNOG-mapper	86416.Clopa_0340	Belongs to the peptidase S14 family	NA
UHGV-0071805_15	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0071805_15	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0071805_15	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA
UHGV-0071805_16	PHROG	phrog_12	portal protein	head and packaging
UHGV-0071805_16	UniRef90	UniRef90_A0A412ULV9	Phage portal protein	NA
UHGV-0071805_16	eggNOG-mapper	1415774.U728_1254	Phage portal protein	NA
UHGV-0071805_16	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0071805_16	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0071805_16	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0071805_17	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0071805_17	UniRef90	UniRef90_A0A412UM03	Terminase large subunit	NA
UHGV-0071805_17	eggNOG-mapper	86416.Clopa_0337	Phage Terminase	NA
UHGV-0071805_17	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0071805_17	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0071805_17	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0071805_17	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0071805_18	PHROG	phrog_5110	terminase small subunit	head and packaging
UHGV-0071805_18	UniRef90	UniRef90_UPI00057D0A7C	P27 family phage terminase small subunit	NA
UHGV-0071805_18	eggNOG-mapper	86416.Clopa_0336	NA	NA
UHGV-0071805_18	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0071805_18	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0071805_19	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0071805_19	UniRef90	UniRef90_A0A412ULY9	HNH endonuclease	NA
UHGV-0071805_19	eggNOG-mapper	1123315.AUIP01000014_gene1945	HNH endonuclease	NA
UHGV-0071805_19	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0071805_19	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0071805_20	Structural annotation	TIGR01636	NA	NA
UHGV-0071805_22	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0071805_22	eggNOG-mapper	1235800.C819_00515	NA	NA
UHGV-0071805_22	Structural annotation	PF21578, NF041486	NA	NA
UHGV-0071805_24	PHROG	phrog_824	NA	unknown function
UHGV-0071805_24	UniRef90	UniRef90_UPI00164A50A6	VRR-NUC domain-containing protein	NA
UHGV-0071805_24	eggNOG-mapper	397288.C806_00096	VRR_NUC	NA
UHGV-0071805_24	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-0071805_24	Structural annotation	PF08774	NA	NA
UHGV-0071805_25	Structural annotation	PF14282, COG5570	NA	NA
UHGV-0071805_26	PHROG	phrog_2245	nucleoside triphosphate pyrophosphohydrolase	other
UHGV-0071805_26	UniRef90	UniRef90_A0A846K3D1	MazG domain-containing protein	NA
UHGV-0071805_26	eggNOG-mapper	1519439.JPJG01000059_gene1914	NA	NA
UHGV-0071805_30	PHROG	phrog_15609	NA	unknown function
UHGV-0071805_30	UniRef90	UniRef90_A0A373SLQ6	NA	NA
UHGV-0071805_30	eggNOG-mapper	1514668.JOOA01000001_gene225	NA	NA
UHGV-0071805_30	Structural annotation	PF11300, NF038070	NA	NA
UHGV-0071805_31	PHROG	phrog_8470	NA	unknown function
UHGV-0071805_31	UniRef90	UniRef90_UPI001E511407	PcfJ domain-containing protein	NA
UHGV-0071805_31	eggNOG-mapper	649747.HMPREF0083_05326	PcfJ-like protein	NA
UHGV-0071805_31	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-0071805_37	Structural annotation	COG1862	NA	NA
UHGV-0071805_38	UniRef90	UniRef90_UPI0005510EBF	helix-turn-helix domain-containing protein	NA
UHGV-0071805_39	PHROG	phrog_2232	NA	unknown function
UHGV-0071805_39	UniRef90	UniRef90_UPI00164B82D7	NA	NA
UHGV-0071805_39	eggNOG-mapper	748224.HMPREF9436_01448	NA	NA
UHGV-0071805_39	Pfam	PF14337	Abortive infection alpha	Abi_alpha
UHGV-0071805_39	Structural annotation	PF14337, TIGR03899	NA	NA
UHGV-0071805_42	PHROG	phrog_585	NA	unknown function
UHGV-0071805_42	UniRef90	UniRef90_A0A851IGZ3	NA	NA
UHGV-0071805_42	eggNOG-mapper	1033744.CAEL01000029_gene1306	NA	NA
UHGV-0071805_42	Pfam	PF10711	NA	DUF2513
UHGV-0071805_42	Structural annotation	PF10711, MF_01819, TIGR03433, COG3432	NA	NA
UHGV-0071805_45	eggNOG-mapper	1219626.HMPREF1639_07045	NA	NA
UHGV-0071805_45	Structural annotation	PF05339, NF041951, COG1476	NA	NA
UHGV-0071805_46	UniRef90	UniRef90_UPI00164B50E0	helix-turn-helix transcriptional regulator	NA
UHGV-0071805_46	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0071805_46	Structural annotation	PF12844, MF_00535, NF041951, COG1396	NA	NA
UHGV-0071805_47	PHROG	phrog_1914	NA	unknown function
UHGV-0071805_47	UniRef90	UniRef90_A0A374NDM7	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0071805_47	eggNOG-mapper	1160721.RBI_I01604	NA	NA
UHGV-0071805_47	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0071805_47	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0071805_47	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0071805_48	PHROG	phrog_1847	NA	unknown function
UHGV-0071805_48	UniRef90	UniRef90_U2Q2K4	T5orf172 domain-containing protein	NA
UHGV-0071805_48	eggNOG-mapper	1256908.HMPREF0373_00641	T5orf172	NA
UHGV-0071805_48	Pfam	PF13455	Meiotically up-regulated gene 113	MUG113
UHGV-0071805_48	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0071805_48	Structural annotation	PF13250, NF041454	NA	NA
UHGV-0071805_49	PHROG	phrog_353	toxin	moron, auxiliary metabolic gene and host takeover
UHGV-0071805_49	UniRef90	UniRef90_A0A7X2NEB3	Addiction module toxin, HicA family	NA
UHGV-0071805_49	eggNOG-mapper	903814.ELI_3150	HicA toxin of bacterial toxin-antitoxin,	NA
UHGV-0071805_49	Pfam	PF07927	HicA toxin of bacterial toxin-antitoxin,	HicA_toxin
UHGV-0071805_49	COG	COG1724	Predicted RNA binding protein YcfA, dsRBD-like fold, HicA-like mRNA interferase family	NA
UHGV-0071805_49	Structural annotation	PF07927, COG1724	NA	NA
UHGV-0071805_50	KOfam	K18843	hicB; antitoxin HicB	NA
UHGV-0071805_50	PHROG	phrog_497	toxin-antitoxin system HicB-like	moron, auxiliary metabolic gene and host takeover
UHGV-0071805_50	UniRef90	UniRef90_A0A1E7S2B4	HicB-like domain-containing protein	NA
UHGV-0071805_50	eggNOG-mapper	903814.ELI_3151	HicB_like antitoxin of bacterial toxin-antitoxin system	NA
UHGV-0071805_50	Pfam	PF15919	HicB_like antitoxin of bacterial toxin-antitoxin system	HicB_lk_antitox
UHGV-0071805_50	COG	COG1598	Antitoxin component HicB of the HicAB toxin-antitoxin system	NA
UHGV-0071805_50	Structural annotation	PF15919, COG1598	NA	NA
UHGV-0071805_51	KOfam	K14059	int; integrase	NA
UHGV-0071805_51	PHROG	phrog_1	integrase	integration and excision
UHGV-0071805_51	UniRef90	UniRef90_A0A2N0ULT2	Integrase	NA
UHGV-0071805_51	eggNOG-mapper	428125.CLOLEP_02743	Belongs to the 'phage' integrase family	NA
UHGV-0071805_51	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0071805_51	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0071805_51	Structural annotation	PF00589, PF02920, MF_01808, TIGR02224, COG4974, COG3422	NA	NA
UHGV-0071805_52	eggNOG-mapper	663278.Ethha_0498	NA	NA
UHGV-0071805_53	eggNOG-mapper	663278.Ethha_0091	NA	NA
UHGV-0071805_53	COG	COG2369	NA	NA