UHGV-0071879

Genome information

Genome length 40,312 bps

CDS count 65

Completeness 98.80% (high-quality)

geNomad score 0.9733

Prediction confidence Confident

Genome information
Genome ID	UHGV-0071879
vOTU ID	vOTU-065281
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_120826
BioSample	SAMEA2580163
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	98.80% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9733
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	34.78
Jumbo phage	No

Genome content
Genome length	40,312 bps
GC content	46.96%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	65
CDS density	86.31%
Average CDS length	540.37 bps
tRNA count	4
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0071879_2	KOfam	K14059	int; integrase	NA
UHGV-0071879_2	PHROG	phrog_1	integrase	integration and excision
UHGV-0071879_2	UniRef90	UniRef90_A0A1C6K4B6	Tyrosine recombinase XerD	NA
UHGV-0071879_2	eggNOG-mapper	742740.HMPREF9474_03478	DNA integration	NA
UHGV-0071879_2	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0071879_2	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0071879_2	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0071879_2	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0071879_3	PHROG	phrog_806	NA	unknown function
UHGV-0071879_3	UniRef90	UniRef90_A0A2N0KAZ5	NA	NA
UHGV-0071879_3	eggNOG-mapper	476272.RUMHYD_01730	NA	NA
UHGV-0071879_3	Pfam	PF16729	NA	DUF5067
UHGV-0071879_3	Structural annotation	PF11611, MF_00791, NF003967, COG2967	NA	NA
UHGV-0071879_4	PHROG	phrog_7823	NA	unknown function
UHGV-0071879_4	eggNOG-mapper	33035.JPJF01000158_gene3562	NA	NA
UHGV-0071879_5	PHROG	phrog_87	metallo-protease	other
UHGV-0071879_5	UniRef90	UniRef90_A0A6N3EMW6	Metallopeptidase ImmA	NA
UHGV-0071879_5	eggNOG-mapper	1235802.C823_04751	IrrE N-terminal-like domain	NA
UHGV-0071879_5	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0071879_5	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0071879_5	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0071879_6	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0071879_6	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0071879_6	UniRef90	UniRef90_A0A2N0KB19	Transcriptional regulator	NA
UHGV-0071879_6	eggNOG-mapper	411459.RUMOBE_00961	Bacteriophage CI repressor helix-turn-helix domain	NA
UHGV-0071879_6	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0071879_6	COG	COG3093	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	NA
UHGV-0071879_6	Structural annotation	PF12844, NF041951, COG1396	NA	NA
UHGV-0071879_7	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0071879_7	UniRef90	UniRef90_A0A2N0KB25	Transcriptional regulator	NA
UHGV-0071879_7	eggNOG-mapper	411460.RUMTOR_02057	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0071879_7	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0071879_7	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0071879_11	PHROG	phrog_36464	NA	unknown function
UHGV-0071879_11	UniRef90	UniRef90_R6QN85	50S ribosomal protein L11 domain protein	NA
UHGV-0071879_11	eggNOG-mapper	742740.HMPREF9474_03484	NA	NA
UHGV-0071879_11	Structural annotation	PF09035	NA	NA
UHGV-0071879_18	PHROG	phrog_674	NA	unknown function
UHGV-0071879_18	UniRef90	UniRef90_A0A3E2U708	NA	NA
UHGV-0071879_18	eggNOG-mapper	1298920.KI911353_gene4871	NA	NA
UHGV-0071879_18	Pfam	PF07083	NA	DUF1351
UHGV-0071879_18	Structural annotation	PF07083	NA	NA
UHGV-0071879_20	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0071879_20	UniRef90	UniRef90_UPI001A9A5EAC	ERF family protein	NA
UHGV-0071879_20	eggNOG-mapper	1304866.K413DRAFT_1196	ERF superfamily	NA
UHGV-0071879_20	Pfam	PF04404	ERF superfamily	ERF
UHGV-0071879_20	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0071879_20	Structural annotation	PF04404, TIGR00607, COG4712	NA	NA
UHGV-0071879_21	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0071879_21	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0071879_21	UniRef90	UniRef90_A0A174IDD4	Single-stranded DNA-binding protein	NA
UHGV-0071879_21	eggNOG-mapper	742740.HMPREF9474_02547	Single-stranded DNA-binding protein	NA
UHGV-0071879_21	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0071879_21	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0071879_21	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0071879_21	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0071879_21	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0071879_22	PHROG	phrog_3490	ERCC4-type nuclease	DNA, RNA and nucleotide metabolism
UHGV-0071879_22	UniRef90	UniRef90_A0A3E2U732	ERCC4 domain-containing protein	NA
UHGV-0071879_22	eggNOG-mapper	1298920.KI911353_gene4868	NA	NA
UHGV-0071879_22	Pfam	PF02732	ERCC4 domain	ERCC4
UHGV-0071879_22	Structural annotation	PF03834, NF040956, COG1948	NA	NA
UHGV-0071879_23	KOfam	K02316	dnaG; DNA primase [EC:2.7.7.101]	NA
UHGV-0071879_23	PHROG	phrog_11992	NA	unknown function
UHGV-0071879_23	UniRef90	UniRef90_A0A3E2N8P1	DNA primase	NA
UHGV-0071879_23	eggNOG-mapper	476272.RUMHYD_01741	CHC2 zinc finger	NA
UHGV-0071879_23	PADLOC	drt-UG29	DRT	DRT
UHGV-0071879_23	Pfam	PF01807	CHC2 zinc finger	zf-CHC2
UHGV-0071879_23	COG	COG0358	DNA primase (bacterial type)	NA
UHGV-0071879_23	Structural annotation	PF01807	NA	NA
UHGV-0071879_24	PHROG	phrog_8841	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UHGV-0071879_24	UniRef90	UniRef90_A0A3E2U7B1	NA	NA
UHGV-0071879_24	eggNOG-mapper	1298920.KI911353_gene4866	NA	NA
UHGV-0071879_24	Pfam	PF06048	NA	DUF927
UHGV-0071879_24	Pfam	PF18662	Cch helix turn helix domain	HTH_56
UHGV-0071879_24	COG	COG5519	NA	NA
UHGV-0071879_24	Structural annotation	PF06048, PF18662, MF_00016, NF011296, COG5519	NA	NA
UHGV-0071879_28	PHROG	phrog_16351	DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0071879_28	UniRef90	UniRef90_A0A894KBW2	LexA_DNA_bind domain-containing protein	NA
UHGV-0071879_28	eggNOG-mapper	1519439.JPJG01000059_gene1909	NA	NA
UHGV-0071879_33	KOfam	K23398	TRIP4; activating signal cointegrator 1	NA
UHGV-0071879_33	PHROG	phrog_3193	NA	unknown function
UHGV-0071879_33	UniRef90	UniRef90_A0A2T3ENY5	ASCH domain-containing protein	NA
UHGV-0071879_33	eggNOG-mapper	1123288.SOV_4c02530	ASCH domain	NA
UHGV-0071879_33	Pfam	PF04266	ASCH domain	ASCH
UHGV-0071879_33	Structural annotation	COG4933	NA	NA
UHGV-0071879_34	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0071879_34	UniRef90	UniRef90_R6ZAS5	GED domain-containing protein	NA
UHGV-0071879_34	eggNOG-mapper	411902.CLOBOL_00148	NA	NA
UHGV-0071879_34	Structural annotation	PF02996	NA	NA
UHGV-0071879_35	eggNOG-mapper	742740.HMPREF9474_03498	NA	NA
UHGV-0071879_36	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0071879_36	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0071879_36	UniRef90	UniRef90_E7GRF4	Terminase small subunit	NA
UHGV-0071879_36	eggNOG-mapper	742740.HMPREF9474_03499	Terminase Small Subunit	NA
UHGV-0071879_36	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0071879_36	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0071879_36	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0071879_37	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0071879_37	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0071879_37	UniRef90	UniRef90_A0A1C7G6C9	Terminase	NA
UHGV-0071879_37	eggNOG-mapper	742740.HMPREF9474_03500	Phage terminase, large subunit, PBSX family	NA
UHGV-0071879_37	COG	COG1783	Phage terminase large subunit	NA
UHGV-0071879_37	Structural annotation	PF03237, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0071879_38	PHROG	phrog_533	portal protein	head and packaging
UHGV-0071879_38	UniRef90	UniRef90_UPI00156DBECA	capsid protein	NA
UHGV-0071879_38	eggNOG-mapper	742740.HMPREF9474_03501	NA	NA
UHGV-0071879_38	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0071879_39	PHROG	phrog_25639	NA	unknown function
UHGV-0071879_39	eggNOG-mapper	742740.HMPREF9474_03502	NA	NA
UHGV-0071879_40	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0071879_40	UniRef90	UniRef90_UPI00138AC1F0	minor capsid protein	NA
UHGV-0071879_40	eggNOG-mapper	742740.HMPREF9474_03503	Phage minor capsid protein 2	NA
UHGV-0071879_40	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0071879_40	Pfam	PF18451	Contact-dependent growth inhibition CdiA C-terminal domain	CdiA_C
UHGV-0071879_40	COG	COG2369	NA	NA
UHGV-0071879_40	Structural annotation	PF06152	NA	NA
UHGV-0071879_41	PHROG	phrog_419	NA	unknown function
UHGV-0071879_41	UniRef90	UniRef90_UPI001C4DCDCC	PGDYG domain-containing protein	NA
UHGV-0071879_41	eggNOG-mapper	797515.HMPREF9103_00825	NA	NA
UHGV-0071879_42	PHROG	phrog_2303	head scaffolding protein	head and packaging
UHGV-0071879_42	eggNOG-mapper	742740.HMPREF9474_03504	NA	NA
UHGV-0071879_43	PHROG	phrog_422	major head protein	head and packaging
UHGV-0071879_43	UniRef90	UniRef90_A0A3E2WBR9	Capsid protein	NA
UHGV-0071879_43	eggNOG-mapper	483218.BACPEC_01155	NA	NA
UHGV-0071879_43	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0071879_44	PHROG	phrog_1378	NA	unknown function
UHGV-0071879_44	eggNOG-mapper	742740.HMPREF9474_03506	NA	NA
UHGV-0071879_45	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0071879_45	eggNOG-mapper	742740.HMPREF9474_03507	NA	NA
UHGV-0071879_46	PHROG	phrog_8710	NA	unknown function
UHGV-0071879_46	eggNOG-mapper	742740.HMPREF9474_03508	NA	NA
UHGV-0071879_46	Structural annotation	PF10665, TIGR01563, COG5614	NA	NA
UHGV-0071879_47	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0071879_47	eggNOG-mapper	742740.HMPREF9474_03509	NA	NA
UHGV-0071879_48	PHROG	phrog_2595	head-tail connector protein	connector
UHGV-0071879_48	UniRef90	UniRef90_UPI001D068DAC	minor capsid protein	NA
UHGV-0071879_48	eggNOG-mapper	742740.HMPREF9474_03510	NA	NA
UHGV-0071879_48	Pfam	PF12691	Bacteriophage minor capsid protein	Minor_capsid_3
UHGV-0071879_48	Structural annotation	PF12691, COG5003	NA	NA
UHGV-0071879_49	PHROG	phrog_820	major tail protein	tail
UHGV-0071879_49	eggNOG-mapper	742740.HMPREF9474_03511	domain, Protein	NA
UHGV-0071879_49	COG	COG5492	NA	NA
UHGV-0071879_49	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0071879_50	PHROG	phrog_8300	NA	unknown function
UHGV-0071879_50	eggNOG-mapper	742740.HMPREF9474_03512	NA	NA
UHGV-0071879_50	Structural annotation	PF06854	NA	NA
UHGV-0071879_51	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0071879_51	UniRef90	UniRef90_A0A174WQ97	Phage-like protein	NA
UHGV-0071879_51	eggNOG-mapper	742740.HMPREF9474_03514	tape measure	NA
UHGV-0071879_51	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0071879_51	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0071879_52	PHROG	phrog_1194	NA	unknown function
UHGV-0071879_52	eggNOG-mapper	742740.HMPREF9474_03515	NA	NA
UHGV-0071879_52	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0071879_53	PHROG	phrog_13879	NA	unknown function
UHGV-0071879_53	eggNOG-mapper	742740.HMPREF9474_03516	NA	NA
UHGV-0071879_53	Structural annotation	PF03256, PF16466, PF13550, MF_00813, NF033848, COG3500	NA	NA
UHGV-0071879_54	PHROG	phrog_18725	NA	unknown function
UHGV-0071879_54	eggNOG-mapper	742740.HMPREF9474_03517	NA	NA
UHGV-0071879_55	eggNOG-mapper	742740.HMPREF9474_03518	NA	NA
UHGV-0071879_56	PHROG	phrog_19111	NA	unknown function
UHGV-0071879_56	eggNOG-mapper	742740.HMPREF9474_03519	ATPase involved in DNA repair	NA
UHGV-0071879_56	COG	COG0419	DNA repair exonuclease SbcCD ATPase subunit	NA
UHGV-0071879_56	Structural annotation	PF21253, NF038128	NA	NA
UHGV-0071879_57	PHROG	phrog_1193	hemolysin	other
UHGV-0071879_57	UniRef90	UniRef90_UPI0017834AC0	hemolysin XhlA family protein	NA
UHGV-0071879_57	eggNOG-mapper	318464.IO99_03750	Haemolysin XhlA	NA
UHGV-0071879_57	Pfam	PF10779	Haemolysin XhlA	XhlA
UHGV-0071879_58	PHROG	phrog_1129	holin	lysis
UHGV-0071879_58	UniRef90	UniRef90_U2D342	Holin family protein	NA
UHGV-0071879_58	eggNOG-mapper	33035.JPJF01000043_gene995	Phage holin family Hol44, in holin superfamily V	NA
UHGV-0071879_58	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0071879_58	Structural annotation	PF06946	NA	NA
UHGV-0071879_60	KOfam	K11062	entD; probable enterotoxin D	NA
UHGV-0071879_60	PHROG	phrog_1794	amidase	lysis
UHGV-0071879_60	UniRef90	UniRef90_UPI001897A03C	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0071879_60	eggNOG-mapper	742740.HMPREF9474_03524	Ami_2	NA
UHGV-0071879_60	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0071879_60	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-0071879_60	Structural annotation	PF01510, PF19127, MF_04111, NF008758, TIGR04035, COG5632	NA	NA
UHGV-0071879_61	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-0071879_61	COG	COG3646	Phage regulatory protein Rha	NA