UHGV-0072002

Genome information

Genome length 38,034 bps

CDS count 57

Completeness 93.52% (high-quality)

geNomad score 0.9651

Prediction confidence Confident

Genome information
Genome ID	UHGV-0072002
vOTU ID	vOTU-060285
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_127666
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	93.52% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	20
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9651
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	54.39
Jumbo phage	No

Genome content
Genome length	38,034 bps
GC content	55.94%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	57
CDS density	88.87%
Average CDS length	596.63 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0072002_1	PHROG	phrog_1313	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0072002_1	UniRef90	UniRef90_UPI0019177E8D	virulence-associated E family protein	NA
UHGV-0072002_1	eggNOG-mapper	1232443.BAIA02000081_gene859	Virulence-associated protein E	NA
UHGV-0072002_1	Pfam	PF05272	Virulence-associated protein E-like domain	VapE-like_dom
UHGV-0072002_1	COG	COG5545	Predicted P-loop ATPase and inactivated derivatives	NA
UHGV-0072002_1	Structural annotation	PF05272, MF_04000, NF005477, COG5545	NA	NA
UHGV-0072002_2	KOfam	K14059	int; integrase	NA
UHGV-0072002_2	PHROG	phrog_1	integrase	integration and excision
UHGV-0072002_2	UniRef90	UniRef90_A0A8A5CK30	Site-specific integrase	NA
UHGV-0072002_2	eggNOG-mapper	877414.ATWA01000018_gene2094	Phage integrase family	NA
UHGV-0072002_2	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0072002_2	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0072002_2	Structural annotation	PF00589, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-0072002_3	eggNOG-mapper	218140.BPSY_1280	NA	NA
UHGV-0072002_3	Structural annotation	TIGR04165, COG3478	NA	NA
UHGV-0072002_4	PHROG	phrog_18586	NA	unknown function
UHGV-0072002_4	UniRef90	UniRef90_UPI001C0E3835	restriction endonuclease	NA
UHGV-0072002_4	eggNOG-mapper	411902.CLOBOL_04415	NA	NA
UHGV-0072002_4	Pfam	PF04471	Restriction endonuclease	Mrr_cat
UHGV-0072002_4	Structural annotation	PF04471, COG1715	NA	NA
UHGV-0072002_5	eggNOG-mapper	411902.CLOBOL_04414	NA	NA
UHGV-0072002_5	Structural annotation	PF19363, COG3355	NA	NA
UHGV-0072002_6	UniRef90	UniRef90_M9LXJ4	Polyketide synthase module	NA
UHGV-0072002_6	eggNOG-mapper	411902.CLOBOL_04413	NA	NA
UHGV-0072002_6	Structural annotation	PF20505, NF001460, COG2974	NA	NA
UHGV-0072002_7	PHROG	phrog_1863	NA	unknown function
UHGV-0072002_7	UniRef90	UniRef90_A0A8D9UH94	Hemolysin	NA
UHGV-0072002_7	eggNOG-mapper	1226322.HMPREF1545_04027	NA	NA
UHGV-0072002_8	PHROG	phrog_28673	tail protein	tail
UHGV-0072002_8	UniRef90	UniRef90_A0A7X7MVN5	SGNH/GDSL hydrolase family protein	NA
UHGV-0072002_8	eggNOG-mapper	1540090.A0A0A0RS40_9CAUD	NA	NA
UHGV-0072002_8	Pfam	PF13385	Concanavalin A-like lectin/glucanases superfamily	Laminin_G_3
UHGV-0072002_8	Structural annotation	PF14606, PF00722	NA	NA
UHGV-0072002_10	PHROG	phrog_3558	tail protein	tail
UHGV-0072002_10	UniRef90	UniRef90_A0A7U9XC50	Chromosome partition protein Smc	NA
UHGV-0072002_10	eggNOG-mapper	877414.ATWA01000019_gene2050	Phage minor structural protein	NA
UHGV-0072002_10	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0072002_10	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0072002_10	COG	COG4926	Phage-related protein	NA
UHGV-0072002_10	Structural annotation	PF06605, PF21683, TIGR01665, COG4926	NA	NA
UHGV-0072002_11	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0072002_11	UniRef90	UniRef90_A0A351TQW0	MtfA protein	NA
UHGV-0072002_11	eggNOG-mapper	1304866.K413DRAFT_1235	PFAM Phage tail protein	NA
UHGV-0072002_11	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-0072002_11	COG	COG4722	Phage-related protein YomH	NA
UHGV-0072002_11	Structural annotation	PF05709, PF02408, TIGR01633, COG4722	NA	NA
UHGV-0072002_12	PHROG	phrog_991	tail length tape measure protein	tail
UHGV-0072002_12	eggNOG-mapper	1123312.KB904569_gene357	Phage tail tape measure protein TP901	NA
UHGV-0072002_12	COG	COG5412	Phage-related protein	NA
UHGV-0072002_13	PHROG	phrog_59	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0072002_13	UniRef90	UniRef90_A0A7D4FJN5	HNH endonuclease	NA
UHGV-0072002_13	eggNOG-mapper	1423775.BAMN01000011_gene594	HNH endonuclease domain protein	NA
UHGV-0072002_13	PADLOC	HEase_00016	homing endonuclease	RM
UHGV-0072002_13	Pfam	PF07463	NUMOD4 motif	NUMOD4
UHGV-0072002_13	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-0072002_14	PHROG	phrog_6900	tail length tape measure protein	tail
UHGV-0072002_14	UniRef90	UniRef90_Q38126	ORF40	NA
UHGV-0072002_14	eggNOG-mapper	1123312.KB904569_gene357	Phage tail tape measure protein TP901	NA
UHGV-0072002_14	COG	COG5412	Phage-related protein	NA
UHGV-0072002_14	Structural annotation	PF20155	NA	NA
UHGV-0072002_15	PHROG	phrog_1021	NA	unknown function
UHGV-0072002_15	eggNOG-mapper	1256908.HMPREF0373_00470	NA	NA
UHGV-0072002_16	PHROG	phrog_885	major tail protein	tail
UHGV-0072002_16	eggNOG-mapper	1256908.HMPREF0373_00471	NA	NA
UHGV-0072002_16	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-0072002_17	eggNOG-mapper	1235800.C819_02229	NA	NA
UHGV-0072002_17	Structural annotation	PF12691	NA	NA
UHGV-0072002_18	UniRef90	UniRef90_UPI001C107D65	HK97 gp10 family phage protein	NA
UHGV-0072002_18	eggNOG-mapper	1235800.C819_02230	NA	NA
UHGV-0072002_18	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0072002_18	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0072002_19	PHROG	phrog_1059	head-tail adaptor	connector
UHGV-0072002_19	UniRef90	UniRef90_A0A1C6E9J3	Bacteriophage head-tail adaptor	NA
UHGV-0072002_19	eggNOG-mapper	1256908.HMPREF0373_00474	NA	NA
UHGV-0072002_19	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0072002_19	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0072002_20	PHROG	phrog_1236	head protein	head and packaging
UHGV-0072002_20	eggNOG-mapper	1256908.HMPREF0373_00475	NA	NA
UHGV-0072002_20	Structural annotation	PF05135	NA	NA
UHGV-0072002_21	PHROG	phrog_544	major head protein	head and packaging
UHGV-0072002_21	UniRef90	UniRef90_UPI001C0F52E5	N4-gp56 family major capsid protein	NA
UHGV-0072002_21	eggNOG-mapper	411471.SUBVAR_06940	NA	NA
UHGV-0072002_21	NCBIFam	TIGR04387.1	N4-gp56 family major capsid protein	NA
UHGV-0072002_21	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0072002_22	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0072002_22	UniRef90	UniRef90_UPI001373E5C4	phage scaffolding protein	NA
UHGV-0072002_22	eggNOG-mapper	929506.CbC4_1215	Phage minor structural protein GP20	NA
UHGV-0072002_22	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0072002_22	Structural annotation	PF06810	NA	NA
UHGV-0072002_23	KOfam	K21471	cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-]	NA
UHGV-0072002_23	PHROG	phrog_2649	endolysin	lysis
UHGV-0072002_23	UniRef90	UniRef90_A0A3D5IDY5	NlpC/P60 domain-containing protein	NA
UHGV-0072002_23	eggNOG-mapper	138119.DSY4643	NLP P60 protein	NA
UHGV-0072002_23	Pfam	PF00877	NlpC/P60 family	NLPC_P60
UHGV-0072002_23	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0072002_23	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0072002_23	Structural annotation	PF00877, PF01471, NF033742, NF038080, COG0791	NA	NA
UHGV-0072002_24	PHROG	phrog_1129	holin	lysis
UHGV-0072002_24	UniRef90	UniRef90_A0A3D5IBP7	Enolase	NA
UHGV-0072002_24	eggNOG-mapper	411461.DORFOR_00721	NA	NA
UHGV-0072002_24	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0072002_24	Structural annotation	PF06946	NA	NA
UHGV-0072002_26	eggNOG-mapper	1095750.HMPREF9970_0107	NA	NA
UHGV-0072002_27	PHROG	phrog_595	head maturation protease	head and packaging
UHGV-0072002_27	UniRef90	UniRef90_A0A3D5ID44	Phage_Mu_F domain-containing protein	NA
UHGV-0072002_27	eggNOG-mapper	1256908.HMPREF0373_00484	Phage Mu protein F like protein	NA
UHGV-0072002_27	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0072002_27	COG	COG2369	NA	NA
UHGV-0072002_27	Structural annotation	PF04233, PF15188, PF04002, TIGR01641, COG2369	NA	NA
UHGV-0072002_28	PHROG	phrog_64	portal protein	head and packaging
UHGV-0072002_28	UniRef90	UniRef90_A0A3D2GX93	Portal protein	NA
UHGV-0072002_28	eggNOG-mapper	1235800.C819_02239	phage portal protein, SPP1	NA
UHGV-0072002_28	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0072002_28	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0072002_29	eggNOG-mapper	476272.RUMHYD_00002	NA	NA
UHGV-0072002_30	PHROG	phrog_1865	NA	unknown function
UHGV-0072002_30	UniRef90	UniRef90_A0A416KKJ7	LSM domain protein	NA
UHGV-0072002_32	PHROG	phrog_595	head maturation protease	head and packaging
UHGV-0072002_32	UniRef90	UniRef90_A0A3D5ID44	Phage_Mu_F domain-containing protein	NA
UHGV-0072002_32	eggNOG-mapper	1256908.HMPREF0373_00484	Phage Mu protein F like protein	NA
UHGV-0072002_32	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0072002_32	COG	COG2369	NA	NA
UHGV-0072002_32	Structural annotation	PF21814, PF06152, TIGR01641, COG2369	NA	NA
UHGV-0072002_33	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0072002_33	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0072002_33	UniRef90	UniRef90_A0A1Q6Q1R5	Terminase	NA
UHGV-0072002_33	eggNOG-mapper	861454.HMPREF9099_00528	Phage terminase large subunit	NA
UHGV-0072002_33	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0072002_33	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0072002_33	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0072002_33	COG	COG1783	Phage terminase large subunit	NA
UHGV-0072002_33	HAMAP	MF_04145	Terminase, large subunit	NA
UHGV-0072002_33	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0072002_34	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0072002_34	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0072002_34	UniRef90	UniRef90_A0A3D5IBW1	Terminase small subunit	NA
UHGV-0072002_34	eggNOG-mapper	1256908.HMPREF0373_00489	Terminase small subunit	NA
UHGV-0072002_34	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0072002_34	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0072002_35	KOfam	K07334	higB-1; toxin HigB-1	NA
UHGV-0072002_35	PHROG	phrog_3066	toxin of TA system	moron, auxiliary metabolic gene and host takeover
UHGV-0072002_35	UniRef90	UniRef90_UPI00094317A8	type II toxin-antitoxin system RelE/ParE family toxin	NA
UHGV-0072002_35	eggNOG-mapper	478749.BRYFOR_07308	NA	NA
UHGV-0072002_35	Pfam	PF05015	RelE-like toxin of type II toxin-antitoxin system HigB	HigB-like_toxin
UHGV-0072002_36	KOfam	K18831	higA; HTH-type transcriptional regulator / antitoxin HigA	NA
UHGV-0072002_36	PHROG	phrog_2439	transcriptional regulator	transcription regulation
UHGV-0072002_36	UniRef90	UniRef90_A0A1Y4S6Y4	Addiction module antidote protein, HigA family	NA
UHGV-0072002_36	eggNOG-mapper	877421.AUJT01000028_gene2084	Helix-turn-helix	NA
UHGV-0072002_36	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0072002_36	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0072002_36	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0072002_36	Structural annotation	PF12844, MF_00535, TIGR02607, COG3093, COG2856	NA	NA
UHGV-0072002_37	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0072002_37	UniRef90	UniRef90_A0A7X6CWS4	NA	NA
UHGV-0072002_37	eggNOG-mapper	862517.HMPREF9225_0469	sigma factor activity	NA
UHGV-0072002_37	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0072002_37	Structural annotation	PF07374, MF_00674, NF008895, COG1191	NA	NA
UHGV-0072002_40	PHROG	phrog_186	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0072002_40	UniRef90	UniRef90_A0A3D5IDX7	DnaB_2 domain-containing protein	NA
UHGV-0072002_40	eggNOG-mapper	1139219.I569_00217	Replication initiation and membrane attachment	NA
UHGV-0072002_40	Pfam	PF07261	Replication initiation and membrane attachment	DnaB_2
UHGV-0072002_40	NCBIFam	TIGR01446.1	DnaD domain protein	NA
UHGV-0072002_40	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0072002_40	Structural annotation	PF03444, MF_01911, TIGR01610, COG5529	NA	NA
UHGV-0072002_41	PHROG	phrog_4973	NA	unknown function
UHGV-0072002_41	UniRef90	UniRef90_A0A1W1YSW9	Helix-turn-helix domain-containing protein	NA
UHGV-0072002_41	eggNOG-mapper	1038869.AXAN01000006_gene942	Helix-turn-helix domain	NA
UHGV-0072002_41	Pfam	PF14090	Helix-turn-helix domain	HTH_39
UHGV-0072002_41	Structural annotation	PF14090, TIGR00373, COG4344	NA	NA
UHGV-0072002_43	PHROG	phrog_190	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0072002_43	UniRef90	UniRef90_UPI001C0F5697	NA	NA
UHGV-0072002_43	eggNOG-mapper	1236514.BAKL01000051_gene3708	NA	NA
UHGV-0072002_43	Pfam	PF06356	NA	DUF1064
UHGV-0072002_43	Structural annotation	PF06356	NA	NA
UHGV-0072002_44	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0072002_44	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0072002_44	UniRef90	UniRef90_A0A7X2P9X1	Single-stranded DNA-binding protein	NA
UHGV-0072002_44	eggNOG-mapper	857293.CAAU_1968	Single-stranded DNA-binding protein	NA
UHGV-0072002_44	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0072002_44	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0072002_44	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0072002_44	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0072002_44	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0072002_49	Structural annotation	PF10656	NA	NA
UHGV-0072002_54	PHROG	phrog_10993	Hoc-like head decoration	head and packaging
UHGV-0072002_54	eggNOG-mapper	552398.HMPREF0866_01588	NA	NA
UHGV-0072002_54	Pfam	PF19789	NA	DUF6273
UHGV-0072002_54	Structural annotation	PF19789	NA	NA
UHGV-0072002_55	UniRef90	UniRef90_UPI0004E26D7B	helix-turn-helix transcriptional regulator	NA
UHGV-0072002_55	eggNOG-mapper	1121423.JONT01000002_gene2373	NA	NA
UHGV-0072002_55	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0072002_55	Structural annotation	PF05339, NF041951, COG1396	NA	NA
UHGV-0072002_56	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0072002_56	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0072002_56	UniRef90	UniRef90_UPI001D07859A	helix-turn-helix transcriptional regulator	NA
UHGV-0072002_56	eggNOG-mapper	1121423.JONT01000002_gene2372	Peptidase S24-like	NA
UHGV-0072002_56	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0072002_56	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0072002_56	Structural annotation	PF01381, MF_00535, NF007257, COG1396	NA	NA
UHGV-0072002_57	UniRef90	UniRef90_A0A6J6H9Q5	Unannotated protein	NA
UHGV-0072002_57	eggNOG-mapper	483216.BACEGG_01163	NA	NA