UHGV-0072037

Genome information

Genome length 38,308 bps

CDS count 61

Completeness 99.98% (high-quality)

geNomad score 0.9687

Prediction confidence Confident

Genome information
Genome ID	UHGV-0072037
vOTU ID	vOTU-014326
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_109313
BioSample	SAMEA2580080
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.98% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	22
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9687
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	49.67
Jumbo phage	No

Genome content
Genome length	38,308 bps
GC content	36.23%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	61
CDS density	91.19%
Average CDS length	577.72 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0072037_1	KOfam	K13631	soxS; AraC family transcriptional regulator, mar-sox-rob regulon activator	NA
UHGV-0072037_1	UniRef90	UniRef90_E5VMJ3	AraC family Bacterial regulatory helix-turn-helix protein	NA
UHGV-0072037_1	eggNOG-mapper	556261.HMPREF0240_00599	family 39	NA
UHGV-0072037_1	Pfam	PF12833	Helix-turn-helix domain	HTH_18
UHGV-0072037_1	COG	COG3664	Beta-xylosidase	NA
UHGV-0072037_2	PHROG	phrog_215	structural protein with Ig domain	head and packaging
UHGV-0072037_2	UniRef90	UniRef90_UPI001EDD0FEF	Ig-like domain-containing protein	NA
UHGV-0072037_2	eggNOG-mapper	411463.EUBVEN_01812	COG COG1501 Alpha-glucosidases, family 31 of glycosyl hydrolases	NA
UHGV-0072037_2	Pfam	PF00188	Cysteine-rich secretory protein family	CAP
UHGV-0072037_2	Pfam	PF02368	Bacterial Ig-like domain (group 2)	Big_2
UHGV-0072037_2	COG	COG1501	Alpha-glucosidase/xylosidase, GH31 family	NA
UHGV-0072037_3	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0072037_3	PHROG	phrog_435	endolysin	lysis
UHGV-0072037_3	UniRef90	UniRef90_UPI000985947E	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0072037_3	eggNOG-mapper	411490.ANACAC_00597	Cell wall hydrolase autolysin	NA
UHGV-0072037_3	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0072037_3	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0072037_3	Structural annotation	PF01520, MF_00562, TIGR02883, COG0860	NA	NA
UHGV-0072037_4	PHROG	phrog_199	holin	lysis
UHGV-0072037_4	UniRef90	UniRef90_A0A415YBY6	Holin	NA
UHGV-0072037_4	eggNOG-mapper	411460.RUMTOR_02100	NA	NA
UHGV-0072037_4	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0072037_4	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0072037_4	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0072037_9	eggNOG-mapper	1499683.CCFF01000017_gene2561	exo-alpha-(2->6)-sialidase activity	NA
UHGV-0072037_9	COG	COG4409	Neuraminidase (sialidase) NanH, contains C-terminal autotransporter domain	NA
UHGV-0072037_10	PHROG	phrog_18608	NA	unknown function
UHGV-0072037_10	UniRef90	UniRef90_UPI001960CF5B	head fiber protein	NA
UHGV-0072037_10	eggNOG-mapper	665956.HMPREF1032_02937	cellulose 1,4-beta-cellobiosidase activity	NA
UHGV-0072037_10	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-0072037_11	PHROG	phrog_3558	tail protein	tail
UHGV-0072037_11	UniRef90	UniRef90_A0A415YC11	Prophage_tail domain-containing protein	NA
UHGV-0072037_11	eggNOG-mapper	411465.PEPMIC_00746	Prophage endopeptidase tail	NA
UHGV-0072037_11	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0072037_11	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0072037_11	COG	COG4926	Phage-related protein	NA
UHGV-0072037_11	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0072037_12	UniRef90	UniRef90_A0A415YBZ3	MtfA protein	NA
UHGV-0072037_12	eggNOG-mapper	411490.ANACAC_00709	phage tail	NA
UHGV-0072037_12	COG	COG4722	Phage-related protein YomH	NA
UHGV-0072037_12	Structural annotation	PF05709, PF11699, TIGR01633, NF009806, COG4722	NA	NA
UHGV-0072037_13	PHROG	phrog_6900	tail length tape measure protein	tail
UHGV-0072037_13	UniRef90	UniRef90_A0A174K285	Phage-related protein	NA
UHGV-0072037_13	eggNOG-mapper	658655.HMPREF0988_02552	Phage tail tape measure protein, TP901 family	NA
UHGV-0072037_13	COG	COG1511	NA	NA
UHGV-0072037_14	PHROG	phrog_706	NA	unknown function
UHGV-0072037_14	UniRef90	UniRef90_A0A174K5P2	Bacteriophage Gp15 protein	NA
UHGV-0072037_14	eggNOG-mapper	411470.RUMGNA_02226	COG NOG24969 non supervised orthologous group	NA
UHGV-0072037_14	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0072037_14	Structural annotation	PF06854	NA	NA
UHGV-0072037_15	PHROG	phrog_4450	NA	unknown function
UHGV-0072037_15	UniRef90	UniRef90_A0A355D9Y6	AP endonuclease	NA
UHGV-0072037_15	eggNOG-mapper	641112.ACOK01000073_gene2902	NA	NA
UHGV-0072037_15	Pfam	PF20378	NA	DUF6673
UHGV-0072037_15	Structural annotation	PF20378	NA	NA
UHGV-0072037_17	PHROG	phrog_3099	NA	unknown function
UHGV-0072037_17	eggNOG-mapper	411462.DORLON_00781	NA	NA
UHGV-0072037_17	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0072037_18	PHROG	phrog_3266	tail completion	connector
UHGV-0072037_18	eggNOG-mapper	411470.RUMGNA_02223	NA	NA
UHGV-0072037_18	Structural annotation	PF12691	NA	NA
UHGV-0072037_19	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0072037_19	UniRef90	UniRef90_UPI001C8E2A32	minor capsid protein	NA
UHGV-0072037_19	eggNOG-mapper	411470.RUMGNA_02222	NA	NA
UHGV-0072037_19	Structural annotation	PF11114	NA	NA
UHGV-0072037_20	PHROG	phrog_3366	NA	unknown function
UHGV-0072037_20	eggNOG-mapper	411470.RUMGNA_02221	NA	NA
UHGV-0072037_20	Pfam	PF20536	NA	DUF6751
UHGV-0072037_20	Structural annotation	PF20536, TIGR01563, COG1853	NA	NA
UHGV-0072037_21	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0072037_21	UniRef90	UniRef90_C4IFE6	Putative gp8	NA
UHGV-0072037_21	eggNOG-mapper	632245.CLP_1650	NA	NA
UHGV-0072037_22	PHROG	phrog_422	major head protein	head and packaging
UHGV-0072037_22	eggNOG-mapper	411470.RUMGNA_02219	NA	NA
UHGV-0072037_22	Structural annotation	PF21703, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0072037_23	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0072037_23	UniRef90	UniRef90_A0A173RCF7	Phage minor structural protein GP20	NA
UHGV-0072037_23	eggNOG-mapper	411461.DORFOR_01166	COG NOG36366 non supervised orthologous group	NA
UHGV-0072037_23	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0072037_24	PHROG	phrog_478	site-specific recombination directionality factor RDF	integration and excision
UHGV-0072037_24	UniRef90	UniRef90_R6R5K5	Protein 64 protein	NA
UHGV-0072037_24	eggNOG-mapper	1111121.HMPREF1247_0834	NA	NA
UHGV-0072037_26	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0072037_26	UniRef90	UniRef90_A0A415YC05	Minor capsid protein	NA
UHGV-0072037_26	eggNOG-mapper	742765.HMPREF9457_02121	NA	NA
UHGV-0072037_26	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0072037_26	COG	COG2369	NA	NA
UHGV-0072037_26	Structural annotation	PF06152, TIGR01641, COG2369	NA	NA
UHGV-0072037_27	PHROG	phrog_533	portal protein	head and packaging
UHGV-0072037_27	UniRef90	UniRef90_A0A414QMA7	Phage capsid protein	NA
UHGV-0072037_27	eggNOG-mapper	742765.HMPREF9457_02120	NA	NA
UHGV-0072037_27	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0072037_28	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0072037_28	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0072037_28	UniRef90	UniRef90_A5KPA1	Phage terminase, large subunit, PBSX family	NA
UHGV-0072037_28	eggNOG-mapper	411460.RUMTOR_02085	NA	NA
UHGV-0072037_28	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0072037_28	COG	COG1783	Phage terminase large subunit	NA
UHGV-0072037_29	PHROG	phrog_2412	NA	unknown function
UHGV-0072037_29	UniRef90	UniRef90_UPI001E414EFE	KGG domain-containing protein	NA
UHGV-0072037_29	eggNOG-mapper	742723.HMPREF9477_00912	NA	NA
UHGV-0072037_30	eggNOG-mapper	665956.HMPREF1032_00651	NA	NA
UHGV-0072037_31	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0072037_31	UniRef90	UniRef90_A0A8J7HD49	NA	NA
UHGV-0072037_31	eggNOG-mapper	478749.BRYFOR_07600	sigma factor activity	NA
UHGV-0072037_31	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0072037_31	Structural annotation	PF07374, MF_00674, NF007227, COG1342	NA	NA
UHGV-0072037_32	PHROG	phrog_30258	NA	unknown function
UHGV-0072037_34	UniRef90	UniRef90_A0A374AM63	NA	NA
UHGV-0072037_34	Pfam	PF12664	NA	DUF3789
UHGV-0072037_35	PHROG	phrog_21101	NA	unknown function
UHGV-0072037_35	UniRef90	UniRef90_D4N1K4	NA	NA
UHGV-0072037_35	eggNOG-mapper	1280663.ATVR01000011_gene647	NA	NA
UHGV-0072037_35	Pfam	PF07866	NA	DUF1653
UHGV-0072037_35	COG	COG4728	NA	NA
UHGV-0072037_35	Structural annotation	PF07866, COG4728	NA	NA
UHGV-0072037_36	PHROG	phrog_31515	NA	unknown function
UHGV-0072037_36	Structural annotation	PF07338, NF033776	NA	NA
UHGV-0072037_38	PHROG	phrog_17690	NA	unknown function
UHGV-0072037_38	UniRef90	UniRef90_A0A6L5XWF4	3-dehydroquinate synthase	NA
UHGV-0072037_38	eggNOG-mapper	665950.HMPREF1025_02546	NA	NA
UHGV-0072037_39	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0072037_39	PHROG	phrog_63	anti-repressor Ant	transcription regulation
UHGV-0072037_39	UniRef90	UniRef90_UPI00156EF6FB	phage antirepressor KilAC domain-containing protein	NA
UHGV-0072037_39	eggNOG-mapper	658655.HMPREF0988_02592	AntA/AntB antirepressor	NA
UHGV-0072037_39	Pfam	PF08346	AntA/AntB antirepressor	AntA
UHGV-0072037_39	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0072037_39	COG	COG3561	Phage anti-repressor protein Ant	NA
UHGV-0072037_39	Structural annotation	PF03374, COG3645, COG3561	NA	NA
UHGV-0072037_40	UniRef90	UniRef90_UPI001D05E6AC	antA/AntB antirepressor family protein	NA
UHGV-0072037_40	eggNOG-mapper	658655.HMPREF0988_02592	AntA/AntB antirepressor	NA
UHGV-0072037_40	Pfam	PF08346	AntA/AntB antirepressor	AntA
UHGV-0072037_40	COG	COG3561	Phage anti-repressor protein Ant	NA
UHGV-0072037_41	PHROG	phrog_2562	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0072037_41	UniRef90	UniRef90_B0P3C8	NA	NA
UHGV-0072037_41	eggNOG-mapper	537013.CLOSTMETH_01717	NA	NA
UHGV-0072037_41	Pfam	PF14297	Lin1244/Lin1753-like, N-terminal	Lin1244_N
UHGV-0072037_41	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0072037_41	Structural annotation	PF14297	NA	NA
UHGV-0072037_42	UniRef90	UniRef90_D4MWK8	HNH endonuclease	NA
UHGV-0072037_42	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0072037_42	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0072037_43	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0072037_43	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0072037_43	UniRef90	UniRef90_D4MWK7	Holliday junction resolvase	NA
UHGV-0072037_43	eggNOG-mapper	857293.CAAU_0790	Endodeoxyribonuclease RusA	NA
UHGV-0072037_43	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0072037_43	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0072037_43	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0072037_44	PHROG	phrog_1029	NA	unknown function
UHGV-0072037_44	eggNOG-mapper	411461.DORFOR_00016	NA	NA
UHGV-0072037_44	Structural annotation	PF10065, COG5532	NA	NA
UHGV-0072037_45	PHROG	phrog_997	replication terminator	DNA, RNA and nucleotide metabolism
UHGV-0072037_45	eggNOG-mapper	411461.DORFOR_00017	NA	NA
UHGV-0072037_46	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0072037_46	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0072037_46	UniRef90	UniRef90_A0A173RED8	p33	NA
UHGV-0072037_46	eggNOG-mapper	742740.HMPREF9474_03488	RecT family	NA
UHGV-0072037_46	Pfam	PF03837	RecT family	RecT
UHGV-0072037_46	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-0072037_46	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0072037_46	Structural annotation	PF03837, TIGR00616, COG3723	NA	NA
UHGV-0072037_47	PHROG	phrog_674	NA	unknown function
UHGV-0072037_47	UniRef90	UniRef90_A0A415G8D2	NA	NA
UHGV-0072037_47	eggNOG-mapper	742740.HMPREF9474_03487	NA	NA
UHGV-0072037_47	Pfam	PF07083	NA	DUF1351
UHGV-0072037_47	Structural annotation	PF07083	NA	NA
UHGV-0072037_48	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0072037_48	UniRef90	UniRef90_B0P3C0	YqaJ viral recombinase family protein	NA
UHGV-0072037_48	eggNOG-mapper	1095750.HMPREF9970_1677	YqaJ viral recombinase family	NA
UHGV-0072037_48	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-0072037_48	NCBIFam	TIGR03033.1	putative phage-type endonuclease	NA
UHGV-0072037_48	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-0072037_48	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-0072037_49	PHROG	phrog_3777	NA	unknown function
UHGV-0072037_49	UniRef90	UniRef90_UPI00142FF24A	NA	NA
UHGV-0072037_49	Structural annotation	PF18441	NA	NA
UHGV-0072037_52	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0072037_52	UniRef90	UniRef90_A0A1Q2C3Y4	HTH cro/C1-type domain-containing protein	NA
UHGV-0072037_52	eggNOG-mapper	748224.HMPREF9436_01450	NA	NA
UHGV-0072037_52	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0072037_52	Structural annotation	PF01381, PF12728, MF_00535, NF041951, COG1396	NA	NA
UHGV-0072037_53	Structural annotation	PF09827, MF_01471, COG1343	NA	NA
UHGV-0072037_55	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0072037_55	PHROG	phrog_2439	transcriptional regulator	transcription regulation
UHGV-0072037_55	UniRef90	UniRef90_A0A173RFH2	Helix-turn-helix	NA
UHGV-0072037_55	eggNOG-mapper	1256908.HMPREF0373_00646	Helix-turn-helix XRE-family like proteins	NA
UHGV-0072037_55	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0072037_55	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0072037_55	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0072037_56	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-0072037_56	UniRef90	UniRef90_A0A173REI3	Helix-turn-helix	NA
UHGV-0072037_56	eggNOG-mapper	742740.HMPREF9474_03481	Helix-turn-helix XRE-family like proteins	NA
UHGV-0072037_56	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0072037_56	COG	COG3093	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	NA
UHGV-0072037_56	Structural annotation	PF01381, MF_00535, NF041951, COG3655	NA	NA
UHGV-0072037_57	PHROG	phrog_87	metallo-protease	other
UHGV-0072037_57	UniRef90	UniRef90_A0A173RF40	Metallopeptidase immA	NA
UHGV-0072037_57	eggNOG-mapper	742740.HMPREF9474_03480	NA	NA
UHGV-0072037_57	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0072037_57	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0072037_58	PHROG	phrog_37750	NA	unknown function
UHGV-0072037_58	UniRef90	UniRef90_A0A173REQ1	Listeria-Bacteroides repeat domain (List_Bact_rpt)	NA
UHGV-0072037_58	eggNOG-mapper	180332.JTGN01000001_gene4919	Listeria-Bacteroides repeat domain (List_Bact_rpt)	NA
UHGV-0072037_58	Pfam	PF09479	Listeria-Bacteroides repeat domain (List_Bact_rpt)	Flg_new
UHGV-0072037_58	NCBIFam	TIGR02543.1	TIGR02543 family repeat protein	NA
UHGV-0072037_58	COG	COG5492	NA	NA
UHGV-0072037_59	KOfam	K14059	int; integrase	NA
UHGV-0072037_59	PHROG	phrog_1	integrase	integration and excision
UHGV-0072037_59	UniRef90	UniRef90_UPI001EDF286E	tyrosine-type recombinase/integrase	NA
UHGV-0072037_59	eggNOG-mapper	742740.HMPREF9474_02388	Belongs to the 'phage' integrase family	NA
UHGV-0072037_59	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0072037_59	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0072037_59	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA