UHGV-0072118

Genome information

Genome length 26,093 bps

CDS count 35

Completeness 66.37% (medium-quality)

geNomad score 0.9720

Prediction confidence Confident

Genome information
Genome ID	UHGV-0072118
vOTU ID	vOTU-025152
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_119104
BioSample	SAMEA2580048
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	66.37% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9720
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Uncertain - viral or bacterial
viralVerify score	5.13
Jumbo phage	No

Genome content
Genome length	26,093 bps
GC content	30.93%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	35
CDS density	93.77%
Average CDS length	700.97 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0072118_1	PHROG	phrog_5164	NA	unknown function
UHGV-0072118_2	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0072118_2	UniRef90	UniRef90_UPI001AA123FB	NA	NA
UHGV-0072118_2	eggNOG-mapper	742741.HMPREF9475_02386	sigma factor activity	NA
UHGV-0072118_2	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0072118_2	Structural annotation	PF07374, MF_00674, NF008895, COG1342	NA	NA
UHGV-0072118_3	eggNOG-mapper	318464.IO99_00535	NA	NA
UHGV-0072118_3	Structural annotation	PF10922, MF_00839	NA	NA
UHGV-0072118_4	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0072118_4	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0072118_4	UniRef90	UniRef90_UPI001C8E62FA	terminase small subunit	NA
UHGV-0072118_4	eggNOG-mapper	1280692.AUJL01000027_gene2167	Terminase small subunit	NA
UHGV-0072118_4	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0072118_4	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0072118_4	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0072118_5	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0072118_5	UniRef90	UniRef90_A0A355D5J6	Terminase	NA
UHGV-0072118_5	eggNOG-mapper	1280692.AUJL01000027_gene2166	Phage terminase, large subunit, PBSX family	NA
UHGV-0072118_5	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0072118_5	COG	COG1783	Phage terminase large subunit	NA
UHGV-0072118_5	Structural annotation	PF03237, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0072118_6	PHROG	phrog_533	portal protein	head and packaging
UHGV-0072118_6	UniRef90	UniRef90_A0A355D4I5	Capsid protein	NA
UHGV-0072118_6	eggNOG-mapper	742740.HMPREF9474_03501	NA	NA
UHGV-0072118_6	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0072118_7	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0072118_7	UniRef90	UniRef90_UPI0006BBFCF3	EndoU domain-containing protein	NA
UHGV-0072118_7	eggNOG-mapper	1151292.QEW_4396	COG3209 Rhs family protein	NA
UHGV-0072118_7	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0072118_7	COG	COG2369	NA	NA
UHGV-0072118_7	Structural annotation	PF06152	NA	NA
UHGV-0072118_10	eggNOG-mapper	180332.JTGN01000008_gene4045	NA	NA
UHGV-0072118_10	Structural annotation	PF08948, MF_01537, NF007541, COG3123	NA	NA
UHGV-0072118_11	PHROG	phrog_6782	tail fiber protein	tail
UHGV-0072118_11	eggNOG-mapper	536233.CLO_0899	NA	NA
UHGV-0072118_13	Structural annotation	NF040910	NA	NA
UHGV-0072118_14	PHROG	phrog_2303	head scaffolding protein	head and packaging
UHGV-0072118_14	eggNOG-mapper	483218.BACPEC_01156	NA	NA
UHGV-0072118_15	PHROG	phrog_422	major head protein	head and packaging
UHGV-0072118_15	UniRef90	UniRef90_UPI00115B1F01	capsid protein	NA
UHGV-0072118_15	eggNOG-mapper	394503.Ccel_3044	NA	NA
UHGV-0072118_15	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0072118_16	PHROG	phrog_1378	NA	unknown function
UHGV-0072118_16	UniRef90	UniRef90_A0A0B3VH35	HALZ domain-containing protein	NA
UHGV-0072118_16	eggNOG-mapper	1415775.U729_2606	NA	NA
UHGV-0072118_17	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0072118_17	eggNOG-mapper	1304866.K413DRAFT_0783	NA	NA
UHGV-0072118_18	PHROG	phrog_8710	NA	unknown function
UHGV-0072118_18	eggNOG-mapper	1282664.H354_06676	NA	NA
UHGV-0072118_18	Structural annotation	PF10665, TIGR01563, COG5614	NA	NA
UHGV-0072118_19	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0072118_19	UniRef90	UniRef90_UPI001B1FE87F	minor capsid protein	NA
UHGV-0072118_19	eggNOG-mapper	1151292.QEW_2428	Minor capsid protein	NA
UHGV-0072118_20	PHROG	phrog_2595	head-tail connector protein	connector
UHGV-0072118_20	UniRef90	UniRef90_UPI0016BCEC89	minor capsid protein	NA
UHGV-0072118_20	eggNOG-mapper	1151292.QEW_2427	NA	NA
UHGV-0072118_20	Pfam	PF12691	Bacteriophage minor capsid protein	Minor_capsid_3
UHGV-0072118_20	Structural annotation	PF12691, COG5003	NA	NA
UHGV-0072118_21	PHROG	phrog_820	major tail protein	tail
UHGV-0072118_21	UniRef90	UniRef90_T3DDR1	Phage major tail 2 family protein	NA
UHGV-0072118_21	eggNOG-mapper	1151292.QEW_2426	NA	NA
UHGV-0072118_21	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0072118_22	PHROG	phrog_8300	NA	unknown function
UHGV-0072118_22	eggNOG-mapper	1151292.QEW_2425	NA	NA
UHGV-0072118_22	Structural annotation	PF06896	NA	NA
UHGV-0072118_23	PHROG	phrog_8355	NA	unknown function
UHGV-0072118_23	UniRef90	UniRef90_UPI0006BBA9AA	Gp15 family bacteriophage protein	NA
UHGV-0072118_23	eggNOG-mapper	1151292.QEW_2424	NA	NA
UHGV-0072118_24	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0072118_24	UniRef90	UniRef90_A0A1C6JZ05	Phage-related protein	NA
UHGV-0072118_24	eggNOG-mapper	33035.JPJF01000093_gene2243	phage tail tape measure protein	NA
UHGV-0072118_24	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0072118_24	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0072118_25	UniRef90	UniRef90_A0A1V4IQS0	TM2 domain protein	NA
UHGV-0072118_25	eggNOG-mapper	1499689.CCNN01000007_gene1692	TM2 domain	NA
UHGV-0072118_25	Pfam	PF13240	zinc-ribbon domain	zinc_ribbon_2
UHGV-0072118_25	COG	COG2314	NA	NA
UHGV-0072118_26	PHROG	phrog_1194	NA	unknown function
UHGV-0072118_26	UniRef90	UniRef90_A0A0B3VTI7	NA	NA
UHGV-0072118_26	eggNOG-mapper	1414720.CBYM010000002_gene561	NA	NA
UHGV-0072118_26	Pfam	PF20458	NA	DUF6711
UHGV-0072118_26	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0072118_27	PHROG	phrog_6616	tail protein	tail
UHGV-0072118_27	eggNOG-mapper	1414720.CBYM010000002_gene560	Phage minor structural protein	NA
UHGV-0072118_27	COG	COG4926	Phage-related protein	NA
UHGV-0072118_27	Structural annotation	PF05113, NF033848, COG3500	NA	NA
UHGV-0072118_28	PHROG	phrog_17334	NA	unknown function
UHGV-0072118_28	eggNOG-mapper	189425.PGRAT_17530	cellulose 1,4-beta-cellobiosidase activity	NA
UHGV-0072118_28	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-0072118_30	PHROG	phrog_199	holin	lysis
UHGV-0072118_30	UniRef90	UniRef90_UPI0018E42E82	phage holin family protein	NA
UHGV-0072118_30	eggNOG-mapper	1414720.CBYM010000040_gene1662	Bacteriophage holin family	NA
UHGV-0072118_30	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0072118_30	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0072118_30	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0072118_30	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0072118_31	KOfam	K07273	acm; lysozyme	NA
UHGV-0072118_31	PHROG	phrog_6219	endolysin	lysis
UHGV-0072118_31	UniRef90	UniRef90_A0A7D6W3I9	Peptidoglycan-binding protein	NA
UHGV-0072118_31	eggNOG-mapper	1294142.CINTURNW_1048	family 25	NA
UHGV-0072118_31	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0072118_31	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0072118_31	COG	COG3409	Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases	NA
UHGV-0072118_31	Structural annotation	PF01183, PF01471, MF_01672, COG3757, COG3409	NA	NA
UHGV-0072118_32	KOfam	K03798	ftsH, hflB; cell division protease FtsH [EC:3.4.24.-]	NA
UHGV-0072118_32	PHROG	phrog_3757	NA	unknown function
UHGV-0072118_32	UniRef90	UniRef90_UPI001D0C0087	AAA family ATPase	NA
UHGV-0072118_32	eggNOG-mapper	1035184.HMPREF1042_1409	ATPase family associated with various cellular activities (AAA)	NA
UHGV-0072118_32	PADLOC	IetA_00002	NA	ietAS
UHGV-0072118_32	Pfam	PF00004	ATPase family associated with various cellular activities (AAA)	AAA
UHGV-0072118_32	COG	COG0464	AAA+-type ATPase, SpoVK/Ycf46/Vps4 family	NA
UHGV-0072118_32	Structural annotation	PF00004, MF_00553, NF003069, COG1222	NA	NA
UHGV-0072118_33	KOfam	K17734	aprX; serine protease AprX [EC:3.4.21.-]	NA
UHGV-0072118_33	PHROG	phrog_3964	NA	unknown function
UHGV-0072118_33	UniRef90	UniRef90_UPI001D002BAF	S8 family serine peptidase	NA
UHGV-0072118_33	eggNOG-mapper	40041.SZO_17620	Subtilase family	NA
UHGV-0072118_33	PADLOC	IetS_00001	NA	ietAS
UHGV-0072118_33	Pfam	PF00082	Subtilase family	Peptidase_S8
UHGV-0072118_33	COG	COG1404	Serine protease, subtilisin family	NA
UHGV-0072118_33	Structural annotation	PF00082, TIGR03921, COG1404	NA	NA
UHGV-0072118_34	UniRef90	UniRef90_A0A6B4PHR3	Helix-turn-helix transcriptional regulator	NA
UHGV-0072118_34	eggNOG-mapper	536233.CLO_0574	Helix-turn-helix domain protein	NA
UHGV-0072118_34	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-0072118_34	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0072118_35	KOfam	K06334	cotJC; spore coat protein JC	NA
UHGV-0072118_35	PHROG	phrog_7573	NA	unknown function
UHGV-0072118_35	UniRef90	UniRef90_A0A1V4IHE6	Putative manganese catalase	NA
UHGV-0072118_35	eggNOG-mapper	195103.CPF_1068	PFAM Manganese containing catalase	NA
UHGV-0072118_35	Pfam	PF05067	Manganese containing catalase	Mn_catalase
UHGV-0072118_35	COG	COG3546	Mn-containing catalase (includes spore coat protein CotJC)	NA