UHGV-0072180

Genome information

Genome length 39,422 bps

CDS count 56

Completeness 94.94% (high-quality)

geNomad score 0.9786

Prediction confidence Confident

Genome information
Genome ID	UHGV-0072180
vOTU ID	vOTU-014382
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_124678
BioSample	SAMEA2737807
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	94.94% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	13
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9786
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	53.77
Jumbo phage	No

Genome content
Genome length	39,422 bps
GC content	42.92%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	56
CDS density	93.47%
Average CDS length	662.52 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0072180_1	KOfam	K14059	int; integrase	NA
UHGV-0072180_1	PHROG	phrog_1	integrase	integration and excision
UHGV-0072180_1	UniRef90	UniRef90_A0A173RBY2	Site-specific tyrosine recombinase XerD	NA
UHGV-0072180_1	eggNOG-mapper	1280698.AUJS01000007_gene999	Phage integrase family	NA
UHGV-0072180_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0072180_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0072180_1	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0072180_3	PHROG	phrog_4980	superinfection exclusion	moron, auxiliary metabolic gene and host takeover
UHGV-0072180_3	eggNOG-mapper	33035.JPJF01000109_gene437	Host cell surface-exposed lipoprotein	NA
UHGV-0072180_3	Pfam	PF07553	Host cell surface-exposed lipoprotein	Lipoprotein_Ltp
UHGV-0072180_3	COG	COG3064	Membrane protein TolA involved in colicin uptake	NA
UHGV-0072180_3	Structural annotation	PF02631, MF_01114, NF001062, COG2137	NA	NA
UHGV-0072180_5	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0072180_5	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0072180_5	UniRef90	UniRef90_UPI0003FEB08A	helix-turn-helix domain-containing protein	NA
UHGV-0072180_5	eggNOG-mapper	1280698.AUJS01000007_gene1002	Helix-turn-helix XRE-family like proteins	NA
UHGV-0072180_5	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0072180_5	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0072180_5	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0072180_8	PHROG	phrog_18631	NA	unknown function
UHGV-0072180_13	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0072180_13	eggNOG-mapper	1280698.AUJS01000007_gene1013	NA	NA
UHGV-0072180_13	Structural annotation	PF01446	NA	NA
UHGV-0072180_15	KOfam	K03469	rnhA, RNASEH1; ribonuclease HI [EC:3.1.26.4]	NA
UHGV-0072180_15	PHROG	phrog_531	Rnase H	DNA, RNA and nucleotide metabolism
UHGV-0072180_15	UniRef90	UniRef90_A0A173RBQ5	Ribonuclease H	NA
UHGV-0072180_15	eggNOG-mapper	1280698.AUJS01000007_gene1015	RNA-DNA hybrid ribonuclease activity	NA
UHGV-0072180_15	Pfam	PF00075	RNase H	RNase_H
UHGV-0072180_15	COG	COG0328	Ribonuclease HI	NA
UHGV-0072180_15	Structural annotation	PF00075, MF_00042, NF001236, COG0328	NA	NA
UHGV-0072180_16	eggNOG-mapper	1280698.AUJS01000007_gene1016	NA	NA
UHGV-0072180_17	PHROG	phrog_4433	NA	unknown function
UHGV-0072180_17	eggNOG-mapper	1280698.AUJS01000007_gene1017	NA	NA
UHGV-0072180_17	Structural annotation	PF12120, NF000318	NA	NA
UHGV-0072180_18	PHROG	phrog_8470	NA	unknown function
UHGV-0072180_18	UniRef90	UniRef90_UPI001C01E393	PcfJ domain-containing protein	NA
UHGV-0072180_18	eggNOG-mapper	1280698.AUJS01000007_gene1018	NA	NA
UHGV-0072180_18	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-0072180_18	Structural annotation	PF14284	NA	NA
UHGV-0072180_19	PHROG	phrog_15077	NA	unknown function
UHGV-0072180_19	UniRef90	UniRef90_A0A3A6HZA9	NA	NA
UHGV-0072180_19	eggNOG-mapper	1280698.AUJS01000007_gene1019	NA	NA
UHGV-0072180_20	PHROG	phrog_7566	NA	unknown function
UHGV-0072180_20	eggNOG-mapper	1280698.AUJS01000007_gene1020	NA	NA
UHGV-0072180_21	PHROG	phrog_8684	NA	unknown function
UHGV-0072180_21	UniRef90	UniRef90_UPI001C00C8FC	YopX family protein	NA
UHGV-0072180_21	eggNOG-mapper	457412.RSAG_01162	YopX protein	NA
UHGV-0072180_21	Pfam	PF09643	YopX protein	YopX
UHGV-0072180_21	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-0072180_21	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0072180_24	Structural annotation	PF10400	NA	NA
UHGV-0072180_27	PHROG	phrog_1936	MazF-like growth inhibitor	moron, auxiliary metabolic gene and host takeover
UHGV-0072180_27	UniRef90	UniRef90_UPI0015711440	type II toxin-antitoxin system PemK/MazF family toxin	NA
UHGV-0072180_27	eggNOG-mapper	411461.DORFOR_01157	NA	NA
UHGV-0072180_27	Pfam	PF02452	PemK-like, MazF-like toxin of type II toxin-antitoxin system	PemK_toxin
UHGV-0072180_27	COG	COG2337	mRNA-degrading endonuclease MazF, toxin component of the MazEF toxin-antitoxin module	NA
UHGV-0072180_28	eggNOG-mapper	411461.DORFOR_01157	NA	NA
UHGV-0072180_28	COG	COG2337	mRNA-degrading endonuclease MazF, toxin component of the MazEF toxin-antitoxin module	NA
UHGV-0072180_30	PHROG	phrog_6568	NA	unknown function
UHGV-0072180_31	PHROG	phrog_11237	NA	unknown function
UHGV-0072180_31	eggNOG-mapper	411461.DORFOR_01161	NA	NA
UHGV-0072180_32	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0072180_32	PHROG	phrog_2606	terminase small subunit	head and packaging
UHGV-0072180_32	UniRef90	UniRef90_B0G4H5	Phage terminase, large subunit, PBSX family	NA
UHGV-0072180_32	eggNOG-mapper	411461.DORFOR_01162	Phage terminase, large subunit, PBSX family	NA
UHGV-0072180_32	Pfam	PF10668	Phage terminase small subunit	Phage_terminase
UHGV-0072180_32	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0072180_32	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0072180_32	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0072180_32	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0072180_32	COG	COG1783	Phage terminase large subunit	NA
UHGV-0072180_32	Structural annotation	PF04466, PF17288, PF06056, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0072180_33	PHROG	phrog_533	portal protein	head and packaging
UHGV-0072180_33	UniRef90	UniRef90_A0A173RC48	Phage portal protein, putative, A118 family	NA
UHGV-0072180_33	eggNOG-mapper	411461.DORFOR_01163	NA	NA
UHGV-0072180_33	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0072180_34	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0072180_34	UniRef90	UniRef90_A0A173RCB2	Phage minor capsid protein 2	NA
UHGV-0072180_34	eggNOG-mapper	411461.DORFOR_01164	NA	NA
UHGV-0072180_34	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0072180_34	COG	COG2369	NA	NA
UHGV-0072180_34	Structural annotation	PF06152	NA	NA
UHGV-0072180_36	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-0072180_36	UniRef90	UniRef90_A0A415UCX1	NA	NA
UHGV-0072180_36	eggNOG-mapper	411461.DORFOR_01165	NA	NA
UHGV-0072180_36	Pfam	PF14359	NA	DUF4406
UHGV-0072180_36	Structural annotation	PF14359	NA	NA
UHGV-0072180_37	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0072180_37	UniRef90	UniRef90_A0A173RCF7	Phage minor structural protein GP20	NA
UHGV-0072180_37	eggNOG-mapper	411461.DORFOR_01166	COG NOG36366 non supervised orthologous group	NA
UHGV-0072180_37	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0072180_38	PHROG	phrog_283	major head protein	head and packaging
UHGV-0072180_38	UniRef90	UniRef90_A0A173REC9	p22 coat protein-gene protein 5	NA
UHGV-0072180_38	eggNOG-mapper	411461.DORFOR_01167	P22 coat protein - gene protein 5	NA
UHGV-0072180_38	Pfam	PF11651	P22 coat protein - gene protein 5	P22_CoatProtein
UHGV-0072180_38	Structural annotation	PF11651, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0072180_39	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0072180_39	eggNOG-mapper	1304866.K413DRAFT_3039	NA	NA
UHGV-0072180_40	PHROG	phrog_3366	NA	unknown function
UHGV-0072180_40	eggNOG-mapper	999411.HMPREF1092_03319	NA	NA
UHGV-0072180_40	Pfam	PF20536	NA	DUF6751
UHGV-0072180_40	Structural annotation	PF20536	NA	NA
UHGV-0072180_41	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0072180_41	UniRef90	UniRef90_UPI001E609FF9	minor capsid protein	NA
UHGV-0072180_41	eggNOG-mapper	411461.DORFOR_01170	Minor capsid protein	NA
UHGV-0072180_41	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0072180_41	Structural annotation	PF11114	NA	NA
UHGV-0072180_42	PHROG	phrog_3266	tail completion	connector
UHGV-0072180_42	Structural annotation	PF12691	NA	NA
UHGV-0072180_43	PHROG	phrog_820	major tail protein	tail
UHGV-0072180_43	UniRef90	UniRef90_A0A174M1L1	S-l_SbsC_C domain-containing protein	NA
UHGV-0072180_43	eggNOG-mapper	411461.DORFOR_01172	NA	NA
UHGV-0072180_43	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0072180_44	PHROG	phrog_4450	NA	unknown function
UHGV-0072180_44	UniRef90	UniRef90_A0A7X3SKC0	AP endonuclease	NA
UHGV-0072180_44	eggNOG-mapper	931276.Cspa_c07520	NA	NA
UHGV-0072180_44	Pfam	PF20378	NA	DUF6673
UHGV-0072180_44	Structural annotation	PF20378	NA	NA
UHGV-0072180_45	PHROG	phrog_706	NA	unknown function
UHGV-0072180_45	UniRef90	UniRef90_A0A173RDK1	Bacteriophage Gp15 protein	NA
UHGV-0072180_45	eggNOG-mapper	411461.DORFOR_01174	Bacteriophage Gp15 protein	NA
UHGV-0072180_45	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0072180_45	Structural annotation	PF06854	NA	NA
UHGV-0072180_46	KOfam	K10421	CLIP1, RSN; CAP-Gly domain-containing linker protein 1	NA
UHGV-0072180_46	PHROG	phrog_19074	NA	unknown function
UHGV-0072180_46	UniRef90	UniRef90_A0A173RDD3	Phage-related protein	NA
UHGV-0072180_46	eggNOG-mapper	411461.DORFOR_01175	phage tail tape measure protein	NA
UHGV-0072180_46	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0072180_46	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0072180_46	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0072180_46	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0072180_47	UniRef90	UniRef90_UPI0015709E93	phage tail protein	NA
UHGV-0072180_47	eggNOG-mapper	411461.DORFOR_01176	NA	NA
UHGV-0072180_47	Structural annotation	PF16774, TIGR01633, COG4722	NA	NA
UHGV-0072180_48	PHROG	phrog_538	minor tail protein	tail
UHGV-0072180_48	UniRef90	UniRef90_UPI001E2C8064	siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-0072180_48	eggNOG-mapper	411461.DORFOR_01177	NA	NA
UHGV-0072180_48	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0072180_48	Structural annotation	PF14594, TIGR01665, COG4379	NA	NA
UHGV-0072180_49	PHROG	phrog_13141	NA	unknown function
UHGV-0072180_49	UniRef90	UniRef90_UPI001570499E	H-type lectin domain-containing protein	NA
UHGV-0072180_49	eggNOG-mapper	411461.DORFOR_01178	NA	NA
UHGV-0072180_49	Structural annotation	PF20747	NA	NA
UHGV-0072180_50	PHROG	phrog_19695	NA	unknown function
UHGV-0072180_50	eggNOG-mapper	411462.DORLON_00772	NA	NA
UHGV-0072180_50	Structural annotation	PF19714	NA	NA
UHGV-0072180_51	KOfam	K20846	cgkA; kappa-carrageenase [EC:3.2.1.83]	NA
UHGV-0072180_51	PHROG	phrog_215	structural protein with Ig domain	head and packaging
UHGV-0072180_51	UniRef90	UniRef90_UPI00156E217C	Ig-like domain-containing protein	NA
UHGV-0072180_51	eggNOG-mapper	411462.DORLON_00771	NA	NA
UHGV-0072180_51	Pfam	PF13472	GDSL-like Lipase/Acylhydrolase family	Lipase_GDSL_2
UHGV-0072180_51	Pfam	PF02368	Bacterial Ig-like domain (group 2)	Big_2
UHGV-0072180_51	Structural annotation	PF10651	NA	NA
UHGV-0072180_52	PHROG	phrog_1009	NA	unknown function
UHGV-0072180_52	UniRef90	UniRef90_A0A173RD60	Branched-chain amino acid ABC transporter permease	NA
UHGV-0072180_52	eggNOG-mapper	742765.HMPREF9457_03364	NA	NA
UHGV-0072180_53	PHROG	phrog_1129	holin	lysis
UHGV-0072180_53	UniRef90	UniRef90_UPI001F15FE24	phage holin family protein	NA
UHGV-0072180_53	eggNOG-mapper	411461.DORFOR_00721	NA	NA
UHGV-0072180_53	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0072180_53	Structural annotation	PF06946	NA	NA
UHGV-0072180_54	PHROG	phrog_2742	endolysin	lysis
UHGV-0072180_54	UniRef90	UniRef90_A0A845KJG7	MurNAc-LAA domain-containing protein	NA
UHGV-0072180_54	eggNOG-mapper	411462.DORLON_00764	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0072180_54	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0072180_54	Pfam	PF07538	Clostridial hydrophobic W	ChW
UHGV-0072180_54	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0072180_54	Structural annotation	PF01520, TIGR02883, COG5492, COG0860	NA	NA
UHGV-0072180_55	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0072180_55	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0072180_55	UniRef90	UniRef90_A0A173UV29	HTH-type transcriptional regulator immR	NA
UHGV-0072180_55	eggNOG-mapper	1123302.KB904159_gene1259	Transcriptional	NA
UHGV-0072180_55	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0072180_55	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0072180_55	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0072180_56	UniRef90	UniRef90_A0A174L6H5	NA	NA
UHGV-0072180_56	eggNOG-mapper	411462.DORLON_00096	NA	NA
UHGV-0072180_56	Pfam	PF14199	NA	DUF4317
UHGV-0072180_56	Structural annotation	PF14199, MF_00730, NF001557, COG3081	NA	NA