UHGV-0072251

Genome information

Genome length 36,723 bps

CDS count 58

Completeness 100.00% (complete)

geNomad score 0.9755

Prediction confidence Confident

Genome information
Genome ID	UHGV-0072251
vOTU ID	vOTU-006861
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_127373
BioSample	SAMEA2737741
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9755
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	32.67
Jumbo phage	No

Genome content
Genome length	36,723 bps
GC content	41.06%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	58
CDS density	91.92%
Average CDS length	583.50 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0072251_1	PHROG	phrog_4581	terminase small subunit	head and packaging
UHGV-0072251_1	UniRef90	UniRef90_UPI001D11694A	HNH endonuclease	NA
UHGV-0072251_1	eggNOG-mapper	97138.C820_00619	HNH endonuclease	NA
UHGV-0072251_1	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0072251_1	Structural annotation	PF13671, MF_03171, NF005251, NF008448, COG4639	NA	NA
UHGV-0072251_2	Pfam	PF13306	BspA type Leucine rich repeat region (6 copies)	LRR_5
UHGV-0072251_4	KOfam	K07273	acm; lysozyme	NA
UHGV-0072251_4	PHROG	phrog_291	endolysin	lysis
UHGV-0072251_4	UniRef90	UniRef90_A0A1V1I0L5	Lysozyme	NA
UHGV-0072251_4	eggNOG-mapper	663278.Ethha_1853	hydrolase, family 25	NA
UHGV-0072251_4	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0072251_4	Pfam	PF08230	CW_7 repeat	CW_7
UHGV-0072251_4	Pfam	PF01476	LysM domain	LysM
UHGV-0072251_4	COG	COG1388	LysM repeat	NA
UHGV-0072251_4	Structural annotation	PF01183, PF01476, TIGR02899, COG3757, COG1388	NA	NA
UHGV-0072251_5	PHROG	phrog_309	terminase small subunit	head and packaging
UHGV-0072251_5	UniRef90	UniRef90_A0A6B9SX71	Transposase/terminase small subunit	NA
UHGV-0072251_5	eggNOG-mapper	1234679.BN424_2628	transposase activity	NA
UHGV-0072251_5	COG	COG2963	Transposase InsE and inactivated derivatives	NA
UHGV-0072251_5	Structural annotation	PF07141	NA	NA
UHGV-0072251_6	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0072251_6	PHROG	phrog_498	DNA methyltransferase	other
UHGV-0072251_6	UniRef90	UniRef90_A0A414XF84	Methyltransferase	NA
UHGV-0072251_6	eggNOG-mapper	12402.Q708N6_9CAUD	N-methyltransferase activity	NA
UHGV-0072251_6	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-0072251_6	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0072251_6	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0072251_6	Structural annotation	PF01555, PF02195, MF_02015, MF_01872, NF010253, TIGR04285, COG0863, COG1475	NA	NA
UHGV-0072251_7	PHROG	phrog_23592	NA	unknown function
UHGV-0072251_7	eggNOG-mapper	1009370.ALO_12681	NA	NA
UHGV-0072251_8	PHROG	phrog_21141	NA	unknown function
UHGV-0072251_8	eggNOG-mapper	1122143.AUEG01000001_gene563	NA	NA
UHGV-0072251_8	AcrCatalog	cluster_5293	NA	NA
UHGV-0072251_10	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0072251_10	PHROG	phrog_17284	NA	unknown function
UHGV-0072251_10	UniRef90	UniRef90_A0A350XVB1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0072251_10	eggNOG-mapper	1291050.JAGE01000001_gene476	C-5 cytosine-specific DNA methylase	NA
UHGV-0072251_10	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0072251_10	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0072251_10	Structural annotation	PF00145, TIGR00675, COG0270	NA	NA
UHGV-0072251_11	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0072251_11	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0072251_11	UniRef90	UniRef90_UPI001C01AEC7	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0072251_11	eggNOG-mapper	545697.HMPREF0216_02819	Endodeoxyribonuclease RusA	NA
UHGV-0072251_11	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0072251_11	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0072251_11	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0072251_12	PHROG	phrog_9804	NA	unknown function
UHGV-0072251_12	UniRef90	UniRef90_UPI000FCAE83A	replicative helicase loader/inhibitor	NA
UHGV-0072251_12	Pfam	PF11417	Loader and inhibitor of phage G40P	Inhibitor_G39P
UHGV-0072251_12	Structural annotation	PF11417	NA	NA
UHGV-0072251_14	PHROG	phrog_4707	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0072251_14	eggNOG-mapper	1122172.KB890259_gene1441	NA	NA
UHGV-0072251_14	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-0072251_14	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0072251_14	Structural annotation	NF040939, COG3355	NA	NA
UHGV-0072251_18	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0072251_18	PHROG	phrog_7241	transcriptional regulator	transcription regulation
UHGV-0072251_18	UniRef90	UniRef90_A0A2P1CCD0	HTH cro/C1-type domain-containing protein	NA
UHGV-0072251_18	eggNOG-mapper	272563.CD630_31521	sequence-specific DNA binding	NA
UHGV-0072251_18	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0072251_18	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0072251_18	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0072251_18	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0072251_19	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0072251_19	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0072251_19	UniRef90	UniRef90_A0A843GFR0	Helix-turn-helix transcriptional regulator	NA
UHGV-0072251_19	eggNOG-mapper	935948.KE386495_gene1302	Helix-turn-helix XRE-family like proteins	NA
UHGV-0072251_19	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-0072251_19	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0072251_19	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0072251_20	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0072251_20	PHROG	phrog_95	integrase	integration and excision
UHGV-0072251_20	UniRef90	UniRef90_A0A1L8D0Y3	Recombinase	NA
UHGV-0072251_20	eggNOG-mapper	1121468.AUBR01000008_gene2069	Resolvase, N terminal domain	NA
UHGV-0072251_20	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0072251_20	Pfam	PF07508	Recombinase	Recombinase
UHGV-0072251_20	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0072251_20	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0072251_20	Structural annotation	PF00239, PF07508, NF041201, COG1961	NA	NA
UHGV-0072251_22	PHROG	phrog_10714	NA	unknown function
UHGV-0072251_22	Pfam	PF13240	zinc-ribbon domain	zinc_ribbon_2
UHGV-0072251_23	PHROG	phrog_10714	NA	unknown function
UHGV-0072251_23	UniRef90	UniRef90_R5R2P7	DNA polymerase II large subunit	NA
UHGV-0072251_23	eggNOG-mapper	428127.EUBDOL_01238	NA	NA
UHGV-0072251_26	PHROG	phrog_3136	NA	unknown function
UHGV-0072251_26	UniRef90	UniRef90_UPI001CBCD733	ASCH domain-containing protein	NA
UHGV-0072251_26	eggNOG-mapper	1235792.C808_00630	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome	NA
UHGV-0072251_26	Pfam	PF04266	ASCH domain	ASCH
UHGV-0072251_26	COG	COG4933	Predicted transcriptional regulator, contains an HTH and PUA-like domains	NA
UHGV-0072251_26	Structural annotation	PF08819, MF_00684, NF008917, COG4933	NA	NA
UHGV-0072251_31	KOfam	K24451	zim; modification methylase	NA
UHGV-0072251_31	PHROG	phrog_67	DNA methyltransferase	other
UHGV-0072251_31	UniRef90	UniRef90_A0A7G9WJV4	Methyltransferase	NA
UHGV-0072251_31	eggNOG-mapper	1120971.AUCA01000053_gene371	DNA methylase	NA
UHGV-0072251_31	PADLOC	MTase_II_00139	Type II methyltransferase	RM
UHGV-0072251_31	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0072251_31	COG	COG0863	DNA modification methylase	NA
UHGV-0072251_31	Structural annotation	PF01555, MF_01872, NF010253, COG0863	NA	NA
UHGV-0072251_32	KOfam	K14440	SMARCAL1, HARP; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:5.6.2.-]	NA
UHGV-0072251_32	PHROG	phrog_62	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0072251_32	UniRef90	UniRef90_A0A7G9WJV3	Helicase	NA
UHGV-0072251_32	eggNOG-mapper	1280692.AUJL01000044_gene2346	SNF2 family N-terminal domain	NA
UHGV-0072251_32	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-0072251_32	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0072251_32	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-0072251_32	Structural annotation	PF18766, PF16203, MF_01821, TIGR04095, COG0553	NA	NA
UHGV-0072251_38	Structural annotation	PF15591, NF000331	NA	NA
UHGV-0072251_41	PHROG	phrog_1220	head protein	head and packaging
UHGV-0072251_41	eggNOG-mapper	394503.Ccel_0827	NA	NA
UHGV-0072251_41	Structural annotation	PF03906, PF20747	NA	NA
UHGV-0072251_42	eggNOG-mapper	913865.DOT_5612	NA	NA
UHGV-0072251_43	PHROG	phrog_538	minor tail protein	tail
UHGV-0072251_43	UniRef90	UniRef90_A0A843HVV8	Siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-0072251_43	eggNOG-mapper	1134413.ANNK01000119_gene2432	Siphovirus ReqiPepy6 Gp37-like protein	NA
UHGV-0072251_43	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0072251_43	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0072251_44	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0072251_44	UniRef90	UniRef90_A0A843HU58	Phage tail family protein	NA
UHGV-0072251_44	eggNOG-mapper	665956.HMPREF1032_00687	Phage tail protein	NA
UHGV-0072251_44	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0072251_44	Structural annotation	PF20753, PF16774, TIGR01633, COG4722	NA	NA
UHGV-0072251_45	KOfam	K10421	CLIP1, RSN; CAP-Gly domain-containing linker protein 1	NA
UHGV-0072251_45	PHROG	phrog_23464	NA	unknown function
UHGV-0072251_45	UniRef90	UniRef90_A0A6B9SS37	Tape measure protein	NA
UHGV-0072251_45	eggNOG-mapper	33035.JPJF01000023_gene3232	phage tail tape measure protein	NA
UHGV-0072251_45	COG	COG5412	Phage-related protein	NA
UHGV-0072251_48	PHROG	phrog_1129	holin	lysis
UHGV-0072251_48	UniRef90	UniRef90_UPI001C124A7D	phage holin family protein	NA
UHGV-0072251_48	eggNOG-mapper	1507.HMPREF0262_01193	Phage holin family Hol44, in holin superfamily V	NA
UHGV-0072251_48	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0072251_48	Structural annotation	PF16079	NA	NA
UHGV-0072251_49	PHROG	phrog_88	major tail protein	tail
UHGV-0072251_49	UniRef90	UniRef90_A0A060M093	Phage major tail protein	NA
UHGV-0072251_49	eggNOG-mapper	1246626.BleG1_2876	phage major tail protein, phi13 family	NA
UHGV-0072251_49	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0072251_50	Structural annotation	PF05657	NA	NA
UHGV-0072251_51	UniRef90	UniRef90_A0A6B9STC9	Tail completion protein	NA
UHGV-0072251_51	Structural annotation	TIGR01725	NA	NA
UHGV-0072251_52	UniRef90	UniRef90_A0A6B9SS91	Head-tail connector	NA
UHGV-0072251_52	eggNOG-mapper	1536774.H70357_10645	NA	NA
UHGV-0072251_52	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0072251_53	eggNOG-mapper	1196322.A370_05715	NA	NA
UHGV-0072251_54	PHROG	phrog_10	major head protein	head and packaging
UHGV-0072251_54	UniRef90	UniRef90_A0A0A0BLN7	Capsid protein	NA
UHGV-0072251_54	eggNOG-mapper	397290.C810_00421	phage major capsid protein, HK97 family	NA
UHGV-0072251_54	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0072251_54	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0072251_54	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0072251_54	Structural annotation	PF05065, PF19962, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0072251_55	KOfam	K06904	NA	NA
UHGV-0072251_55	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0072251_55	UniRef90	UniRef90_A0A6B9SX27	Head maturation protease	NA
UHGV-0072251_55	eggNOG-mapper	1278311.AUAL01000001_gene29	Phage prohead protease, HK97 family	NA
UHGV-0072251_55	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0072251_55	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0072251_55	COG	COG3740	Phage head maturation protease	NA
UHGV-0072251_55	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0072251_56	PHROG	phrog_12	portal protein	head and packaging
UHGV-0072251_56	UniRef90	UniRef90_A0A6B9SS26	Portal protein	NA
UHGV-0072251_56	eggNOG-mapper	1211817.CCAT010000007_gene1039	Portal protein	NA
UHGV-0072251_56	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0072251_56	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0072251_56	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0072251_57	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0072251_57	UniRef90	UniRef90_A0A6B9SRL5	Terminase large subunit	NA
UHGV-0072251_57	eggNOG-mapper	1211817.CCAT010000007_gene1040	Terminase	NA
UHGV-0072251_57	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0072251_57	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0072251_57	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0072251_57	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA