UHGV-0072312

Genome information

Genome length 16,711 bps

CDS count 22

Completeness 84.76% (medium-quality)

geNomad score 0.9715

Prediction confidence Confident

Genome information
Genome ID	UHGV-0072312
vOTU ID	vOTU-065470
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_131105
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	84.76% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	6
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9715
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	29.78
Jumbo phage	No

Genome content
Genome length	16,711 bps
GC content	33.98%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	22
CDS density	91.93%
Average CDS length	698.86 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0072312_2	PHROG	phrog_3225	adaptor Ad4	connector
UHGV-0072312_2	UniRef90	UniRef90_Q37892	Proximal tail tube connector protein	NA
UHGV-0072312_2	eggNOG-mapper	10753.B7SSN2_BPNF	NA	NA
UHGV-0072312_3	PHROG	phrog_2038	upper collar connector	connector
UHGV-0072312_3	UniRef90	UniRef90_A0A345MZG5	Upper collar protein	NA
UHGV-0072312_3	eggNOG-mapper	10753.B7SSN1_BPNF	Phage Connector (GP10)	NA
UHGV-0072312_3	Pfam	PF05352	Phage Connector (GP10)	Phage_connector
UHGV-0072312_3	Structural annotation	PF05352, TIGR01538, COG4695	NA	NA
UHGV-0072312_4	PHROG	phrog_2248	tail protein	tail
UHGV-0072312_4	UniRef90	UniRef90_A0A843HKP3	Caud_tail_N domain-containing protein	NA
UHGV-0072312_4	eggNOG-mapper	10756.DIT9_BPPH2	NA	NA
UHGV-0072312_4	Pfam	PF16838	Caudoviral major tail protein N-terminus	Caud_tail_N
UHGV-0072312_4	Pfam	PF20934	Bacillus phage phi29, Tail knob protein gp9, C-terminal domain	phi29_gp9_C
UHGV-0072312_4	Structural annotation	PF20934, PF16838	NA	NA
UHGV-0072312_5	PHROG	phrog_2006	major head protein	head and packaging
UHGV-0072312_5	UniRef90	UniRef90_A0A843HGC7	Ig-like domain-containing protein	NA
UHGV-0072312_5	eggNOG-mapper	10756.CAPSD_BPPH2	viral capsid	NA
UHGV-0072312_5	Structural annotation	PF19821, PF02368, MF_04119, NF033394, COG1659	NA	NA
UHGV-0072312_8	UniRef90	UniRef90_A0A843HN93	Amidase_5 domain-containing protein	NA
UHGV-0072312_8	eggNOG-mapper	632245.CLP_1284	NlpC/P60 family	NA
UHGV-0072312_8	Pfam	PF05382	Bacteriophage peptidoglycan hydrolase	Amidase_5
UHGV-0072312_8	Pfam	PF18013	Phage tail lysozyme	Phage_lysozyme2
UHGV-0072312_8	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0072312_8	Structural annotation	PF18013	NA	NA
UHGV-0072312_9	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0072312_9	PHROG	phrog_435	endolysin	lysis
UHGV-0072312_9	UniRef90	UniRef90_A0A3D5TEB1	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0072312_9	eggNOG-mapper	994573.T472_0210960	n-acetylmuramoyl-l-alanine amidase	NA
UHGV-0072312_9	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0072312_9	Pfam	PF05036	SPOR domain	SPOR
UHGV-0072312_9	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0072312_9	Structural annotation	PF01520, MF_00562, TIGR02883, COG0860	NA	NA
UHGV-0072312_10	PHROG	phrog_199	holin	lysis
UHGV-0072312_10	UniRef90	UniRef90_A0A843HKJ8	Phage holin family protein	NA
UHGV-0072312_10	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0072312_10	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0072312_10	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0072312_10	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0072312_11	PHROG	phrog_2150	terminase	head and packaging
UHGV-0072312_11	UniRef90	UniRef90_A0A843HJH1	Phage DNA encapsidation protein	NA
UHGV-0072312_11	eggNOG-mapper	338473.A6XAE1_9CAUD	Podovirus DNA encapsidation protein (Gp16)	NA
UHGV-0072312_11	Pfam	PF05894	Podovirus DNA encapsidation protein (Gp16)	Podovirus_Gp16
UHGV-0072312_11	Structural annotation	PF05894, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0072312_13	KOfam	K21237	gp2; Podoviridae DNA polymerase [EC:2.7.7.7]	NA
UHGV-0072312_13	PHROG	phrog_1907	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0072312_13	UniRef90	UniRef90_A0A843GSA4	DNA-directed DNA polymerase	NA
UHGV-0072312_13	eggNOG-mapper	10753.DPOL_BPNF	nucleotide binding	NA
UHGV-0072312_13	Pfam	PF03175	DNA polymerase type B, organellar and viral	DNA_pol_B_2
UHGV-0072312_13	Structural annotation	PF03175, MF_04055, NF004415, COG0417	NA	NA
UHGV-0072312_15	Pfam	PF17427	Phage Single-stranded DNA-binding protein	Phi29_Phage_SSB
UHGV-0072312_15	Structural annotation	PF17427	NA	NA
UHGV-0072312_16	Structural annotation	PF17548	NA	NA
UHGV-0072312_17	Structural annotation	PF07865	NA	NA