UHGV-0072323

Genome information

Genome length 37,576 bps

CDS count 62

Completeness 99.34% (high-quality)

geNomad score 0.9807

Prediction confidence Confident

Genome information
Genome ID	UHGV-0072323
vOTU ID	vOTU-062644
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_110778
BioSample	SAMEA2580041
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.34% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	21
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9807
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	62.11
Jumbo phage	No

Genome content
Genome length	37,576 bps
GC content	41.57%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	62
CDS density	90.40%
Average CDS length	550.55 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0072323_1	eggNOG-mapper	1232453.BAIF02000051_gene1085	NA	NA
UHGV-0072323_2	UniRef90	UniRef90_A0A1C6A241	CD20-like family	NA
UHGV-0072323_2	eggNOG-mapper	411470.RUMGNA_03782	NA	NA
UHGV-0072323_3	UniRef90	UniRef90_A7B867	NMT1 domain-containing protein	NA
UHGV-0072323_3	eggNOG-mapper	411470.RUMGNA_03783	NMT1/THI5 like	NA
UHGV-0072323_3	Pfam	PF09084	NMT1/THI5 like	NMT1
UHGV-0072323_3	COG	COG0715	ABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic component	NA
UHGV-0072323_5	eggNOG-mapper	411470.RUMGNA_03785	NA	NA
UHGV-0072323_6	UniRef90	UniRef90_S2ZLJ4	HTH cro/C1-type domain-containing protein	NA
UHGV-0072323_6	eggNOG-mapper	411470.RUMGNA_03786	Helix-turn-helix XRE-family like proteins	NA
UHGV-0072323_6	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0072323_7	UniRef90	UniRef90_A0A3E4V8L0	XRE family transcriptional regulator	NA
UHGV-0072323_7	eggNOG-mapper	411470.RUMGNA_03786	Helix-turn-helix XRE-family like proteins	NA
UHGV-0072323_7	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0072323_7	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0072323_7	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0072323_8	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0072323_8	PHROG	phrog_833	endolysin	lysis
UHGV-0072323_8	UniRef90	UniRef90_A0A2N5Q1W5	N-acetylmuramoyl-L-alanine amidase domain-containing protein	NA
UHGV-0072323_8	eggNOG-mapper	1232453.BAIF02000059_gene1616	Ami_2	NA
UHGV-0072323_8	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0072323_8	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-0072323_8	Structural annotation	PF01510, MF_04111, NF008758, COG5632	NA	NA
UHGV-0072323_9	PHROG	phrog_918	NA	unknown function
UHGV-0072323_9	UniRef90	UniRef90_UPI00195F2652	NA	NA
UHGV-0072323_9	eggNOG-mapper	1140001.I571_01827	NA	NA
UHGV-0072323_9	Pfam	PF19791	NA	DUF6275
UHGV-0072323_9	Structural annotation	PF19791	NA	NA
UHGV-0072323_10	PHROG	phrog_199	holin	lysis
UHGV-0072323_10	UniRef90	UniRef90_A0A2N5P5I5	Holin	NA
UHGV-0072323_10	eggNOG-mapper	1469948.JPNB01000001_gene536	TIGRFAM toxin secretion phage lysis holin	NA
UHGV-0072323_10	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0072323_10	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0072323_10	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0072323_10	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0072323_11	PHROG	phrog_588	tail fiber protein and host specificity	tail
UHGV-0072323_11	UniRef90	UniRef90_A7B3U9	Phage minor structural protein, N-terminal domain protein	NA
UHGV-0072323_11	eggNOG-mapper	411470.RUMGNA_02230	NA	NA
UHGV-0072323_11	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0072323_11	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0072323_11	Structural annotation	PF14594, PF08931, PF20942, TIGR01665, COG4926	NA	NA
UHGV-0072323_12	PHROG	phrog_202	distal tail protein Dit	tail
UHGV-0072323_12	UniRef90	UniRef90_A7B3U8	Putative phage tail component domain protein	NA
UHGV-0072323_12	eggNOG-mapper	411470.RUMGNA_02229	NA	NA
UHGV-0072323_12	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0072323_12	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-0072323_12	COG	COG4722	Phage-related protein YomH	NA
UHGV-0072323_12	Structural annotation	PF05709, PF21708, TIGR01633, NF041449, COG4722, COG3506	NA	NA
UHGV-0072323_13	PHROG	phrog_6900	tail length tape measure protein	tail
UHGV-0072323_13	UniRef90	UniRef90_UPI001C8EB1BF	tape measure protein	NA
UHGV-0072323_13	eggNOG-mapper	742765.HMPREF9457_02136	nuclear chromosome segregation	NA
UHGV-0072323_13	COG	COG1511	NA	NA
UHGV-0072323_13	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0072323_14	PHROG	phrog_706	NA	unknown function
UHGV-0072323_14	UniRef90	UniRef90_UPI00195660EF	Gp15 family bacteriophage protein	NA
UHGV-0072323_14	eggNOG-mapper	658655.HMPREF0988_02553	Bacteriophage Gp15 protein	NA
UHGV-0072323_14	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0072323_14	Structural annotation	PF06854	NA	NA
UHGV-0072323_15	PHROG	phrog_4450	NA	unknown function
UHGV-0072323_15	UniRef90	UniRef90_UPI001C0AC01D	AP endonuclease	NA
UHGV-0072323_15	eggNOG-mapper	1235792.C808_05374	NA	NA
UHGV-0072323_15	Pfam	PF20378	NA	DUF6673
UHGV-0072323_15	Structural annotation	PF20378	NA	NA
UHGV-0072323_16	PHROG	phrog_3099	NA	unknown function
UHGV-0072323_16	eggNOG-mapper	411470.RUMGNA_02224	NA	NA
UHGV-0072323_16	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0072323_17	PHROG	phrog_3266	tail completion	connector
UHGV-0072323_17	eggNOG-mapper	411470.RUMGNA_02223	NA	NA
UHGV-0072323_17	Structural annotation	PF12691	NA	NA
UHGV-0072323_18	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0072323_18	UniRef90	UniRef90_UPI001C8E2A32	minor capsid protein	NA
UHGV-0072323_18	eggNOG-mapper	411470.RUMGNA_02222	NA	NA
UHGV-0072323_18	Structural annotation	PF11114	NA	NA
UHGV-0072323_19	PHROG	phrog_3366	NA	unknown function
UHGV-0072323_19	eggNOG-mapper	411470.RUMGNA_02221	NA	NA
UHGV-0072323_19	Pfam	PF20536	NA	DUF6751
UHGV-0072323_19	Structural annotation	PF20536, COG5614	NA	NA
UHGV-0072323_20	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0072323_20	eggNOG-mapper	411462.DORLON_00785	NA	NA
UHGV-0072323_21	KOfam	K24358	COL26A, EMID2; collagen type XXVI alpha (EMI domain-containing protein 2)	NA
UHGV-0072323_21	PHROG	phrog_5073	tail fiber protein	tail
UHGV-0072323_21	UniRef90	UniRef90_UPI00156FBED9	head fiber protein	NA
UHGV-0072323_21	eggNOG-mapper	1232443.BAIA02000078_gene28	domain, Protein	NA
UHGV-0072323_21	Pfam	PF11133	Head fiber protein	Phage_head_fibr
UHGV-0072323_21	COG	COG3266	Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain	NA
UHGV-0072323_22	PHROG	phrog_422	major head protein	head and packaging
UHGV-0072323_22	eggNOG-mapper	658655.HMPREF0988_02560	NA	NA
UHGV-0072323_22	Structural annotation	PF21703, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0072323_23	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0072323_23	UniRef90	UniRef90_A0A6N2UWT0	Phage minor structural protein GP20	NA
UHGV-0072323_23	eggNOG-mapper	1304866.K413DRAFT_3037	Phage minor structural protein GP20	NA
UHGV-0072323_23	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0072323_23	Structural annotation	PF06810	NA	NA
UHGV-0072323_24	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0072323_24	UniRef90	UniRef90_A0A2N5PKG3	Minor capsid protein	NA
UHGV-0072323_24	eggNOG-mapper	1235799.C818_04219	Phage minor capsid protein 2	NA
UHGV-0072323_24	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0072323_24	COG	COG2369	NA	NA
UHGV-0072323_24	Structural annotation	PF06152	NA	NA
UHGV-0072323_25	PHROG	phrog_533	portal protein	head and packaging
UHGV-0072323_25	UniRef90	UniRef90_A0A2N5PKH7	Phage capsid protein	NA
UHGV-0072323_25	eggNOG-mapper	658655.HMPREF0988_02564	NA	NA
UHGV-0072323_25	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0072323_26	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0072323_26	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0072323_26	UniRef90	UniRef90_A0A2N5PKF3	Terminase	NA
UHGV-0072323_26	eggNOG-mapper	411470.RUMGNA_02211	NA	NA
UHGV-0072323_26	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0072323_26	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0072323_26	COG	COG1783	Phage terminase large subunit	NA
UHGV-0072323_26	Structural annotation	PF04466, PF20441, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0072323_27	PHROG	phrog_309	terminase small subunit	head and packaging
UHGV-0072323_27	UniRef90	UniRef90_A0A2N5PKF8	Transposase	NA
UHGV-0072323_27	eggNOG-mapper	411470.RUMGNA_02210	transposase activity	NA
UHGV-0072323_27	Pfam	PF13384	Homeodomain-like domain	HTH_23
UHGV-0072323_27	COG	COG2963	Transposase InsE and inactivated derivatives	NA
UHGV-0072323_27	Structural annotation	PF07141	NA	NA
UHGV-0072323_28	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0072323_28	UniRef90	UniRef90_A0A3E4V8N2	Sigma70_r4 domain-containing protein	NA
UHGV-0072323_28	eggNOG-mapper	411470.RUMGNA_02205	Sigma-70, region 4	NA
UHGV-0072323_28	Pfam	PF04545	Sigma-70, region 4	Sigma70_r4
UHGV-0072323_28	Structural annotation	PF04545, MF_00245, NF001068, COG2739	NA	NA
UHGV-0072323_30	eggNOG-mapper	411470.RUMGNA_02203	NA	NA
UHGV-0072323_32	PHROG	phrog_15198	NA	unknown function
UHGV-0072323_32	UniRef90	UniRef90_A0A8B3BTL4	NA	NA
UHGV-0072323_32	eggNOG-mapper	658655.HMPREF0988_00863	NA	NA
UHGV-0072323_32	Pfam	PF04448	NA	DUF551
UHGV-0072323_37	eggNOG-mapper	1235792.C808_03076	NA	NA
UHGV-0072323_39	PHROG	phrog_25488	NA	unknown function
UHGV-0072323_39	Structural annotation	PF12844, PF01316, MF_00535, TIGR00270, COG1476	NA	NA
UHGV-0072323_40	PHROG	phrog_2600	NA	unknown function
UHGV-0072323_40	eggNOG-mapper	1178540.BA70_18565	NA	NA
UHGV-0072323_41	PHROG	phrog_1163	NA	unknown function
UHGV-0072323_41	UniRef90	UniRef90_A0A415S878	Replication protein	NA
UHGV-0072323_41	eggNOG-mapper	1042163.BRLA_c031420	Conserved phage C-terminus (Phg_2220_C)	NA
UHGV-0072323_41	Pfam	PF09681	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
UHGV-0072323_41	Pfam	PF09524	Conserved phage C-terminus (Phg_2220_C)	Phg_2220_C
UHGV-0072323_41	NCBIFam	TIGR01714.1	phage replisome organizer, putative, N-terminal region	NA
UHGV-0072323_41	COG	COG1846	DNA-binding transcriptional regulator, MarR family	NA
UHGV-0072323_41	Structural annotation	PF09681, TIGR01714, COG3388	NA	NA
UHGV-0072323_42	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0072323_42	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0072323_42	UniRef90	UniRef90_A7B3R6	Crossover junction endodeoxyribonuclease RusA	NA
UHGV-0072323_42	eggNOG-mapper	411470.RUMGNA_02196	COG COG4570 Holliday junction resolvase	NA
UHGV-0072323_42	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0072323_42	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0072323_42	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0072323_43	PHROG	phrog_7566	NA	unknown function
UHGV-0072323_43	UniRef90	UniRef90_A0A2N5NVH0	Phosphoenolpyruvate carboxykinase	NA
UHGV-0072323_44	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0072323_44	eggNOG-mapper	411470.RUMGNA_02194	NA	NA
UHGV-0072323_44	Structural annotation	PF05772, NF007281	NA	NA
UHGV-0072323_45	PHROG	phrog_14970	NA	unknown function
UHGV-0072323_45	eggNOG-mapper	411470.RUMGNA_02193	double-strand break repair protein	NA
UHGV-0072323_45	COG	COG4712	Predicted ssDNA annealing protein, contains HHH motif, Rad42/Rad22/RecT/erf family	NA
UHGV-0072323_45	Structural annotation	PF04098, TIGR00607, COG4712	NA	NA
UHGV-0072323_46	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0072323_46	UniRef90	UniRef90_A7B3R2	Siphovirus Gp157	NA
UHGV-0072323_46	eggNOG-mapper	411470.RUMGNA_02192	Siphovirus Gp157	NA
UHGV-0072323_46	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-0072323_46	Structural annotation	PF05565	NA	NA
UHGV-0072323_51	eggNOG-mapper	1235790.C805_00014	NA	NA
UHGV-0072323_52	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0072323_52	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0072323_52	UniRef90	UniRef90_A0A2N5NVG8	Bro-N domain-containing protein	NA
UHGV-0072323_52	eggNOG-mapper	33035.JPJF01000057_gene3118	BRO family, N-terminal domain	NA
UHGV-0072323_52	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0072323_52	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0072323_52	COG	COG3617	Prophage antirepressor	NA
UHGV-0072323_52	Structural annotation	PF03374, PF02498, TIGR02681, COG3645	NA	NA
UHGV-0072323_53	PHROG	phrog_8130	NA	unknown function
UHGV-0072323_53	UniRef90	UniRef90_A0A2N5NVJ1	T5orf172 domain-containing protein	NA
UHGV-0072323_53	Pfam	PF13455	Meiotically up-regulated gene 113	MUG113
UHGV-0072323_54	PHROG	phrog_28292	NA	unknown function
UHGV-0072323_54	UniRef90	UniRef90_A0A8B3BZ84	3-hydroxyacyl-CoA dehydrogenase	NA
UHGV-0072323_54	eggNOG-mapper	500632.CLONEX_01438	NA	NA
UHGV-0072323_56	PHROG	phrog_373	anti-repressor	transcription regulation
UHGV-0072323_56	UniRef90	UniRef90_UPI000E4A5456	Rha family transcriptional regulator	NA
UHGV-0072323_56	eggNOG-mapper	1304866.K413DRAFT_3063	TIGRFAM phage regulatory protein, Rha family	NA
UHGV-0072323_56	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-0072323_56	NCBIFam	TIGR02681.1	phage regulatory protein, Rha family	NA
UHGV-0072323_56	COG	COG3617	Prophage antirepressor	NA
UHGV-0072323_56	Structural annotation	PF09669, TIGR02681, COG3646	NA	NA
UHGV-0072323_57	UniRef90	UniRef90_A0A2N5P5C9	Transcriptional regulator	NA
UHGV-0072323_57	eggNOG-mapper	411461.DORFOR_00030	Helix-turn-helix XRE-family like proteins	NA
UHGV-0072323_57	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0072323_57	Structural annotation	PF12844, NF041951, COG1396	NA	NA
UHGV-0072323_58	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0072323_58	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0072323_58	UniRef90	UniRef90_A0A2N5P5C5	HTH cro/C1-type domain-containing protein	NA
UHGV-0072323_58	eggNOG-mapper	397288.C806_00131	Transcriptional	NA
UHGV-0072323_58	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0072323_58	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0072323_58	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0072323_58	Structural annotation	PF12844, MF_00535, NF007257, COG1476	NA	NA
UHGV-0072323_60	eggNOG-mapper	411461.DORFOR_00034	NA	NA
UHGV-0072323_60	Structural annotation	PF11631, TIGR03066	NA	NA
UHGV-0072323_61	PHROG	phrog_7115	NA	unknown function
UHGV-0072323_61	UniRef90	UniRef90_UPI001CD3F351	PH domain-containing protein	NA
UHGV-0072323_61	eggNOG-mapper	471855.Shel_11460	Bacterial PH domain	NA
UHGV-0072323_61	Pfam	PF08000	Bacterial PH domain	bPH_1
UHGV-0072323_61	Structural annotation	PF08000, MF_00437	NA	NA
UHGV-0072323_62	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0072323_62	PHROG	phrog_95	integrase	integration and excision
UHGV-0072323_62	UniRef90	UniRef90_A7B3P5	Resolvase, N-terminal domain protein	NA
UHGV-0072323_62	eggNOG-mapper	411470.RUMGNA_02175	Resolvase, N terminal domain	NA
UHGV-0072323_62	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0072323_62	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0072323_62	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA