UHGV-0072330

Genome information

Genome length 28,271 bps

CDS count 40

Completeness 67.48% (medium-quality)

geNomad score 0.9800

Prediction confidence Confident

Genome information
Genome ID	UHGV-0072330
vOTU ID	vOTU-022739
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_128055
BioSample	SAMEA2737825
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	67.48% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9800
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	57.1
Jumbo phage	No

Genome content
Genome length	28,271 bps
GC content	43.33%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	40
CDS density	91.97%
Average CDS length	651.08 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0072330_2	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0072330_2	PHROG	phrog_63	anti-repressor Ant	transcription regulation
UHGV-0072330_2	UniRef90	UniRef90_A0A415UM63	Oxidoreductase	NA
UHGV-0072330_2	eggNOG-mapper	658655.HMPREF0988_02592	AntA/AntB antirepressor	NA
UHGV-0072330_2	Pfam	PF08346	AntA/AntB antirepressor	AntA
UHGV-0072330_2	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0072330_2	COG	COG3561	Phage anti-repressor protein Ant	NA
UHGV-0072330_2	Structural annotation	PF03374, PF08346, TIGR02681, COG3645, COG3561	NA	NA
UHGV-0072330_5	UniRef90	UniRef90_UPI001C02D4D3	ABC transporter ATP-binding protein	NA
UHGV-0072330_7	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0072330_7	PHROG	phrog_2606	terminase small subunit	head and packaging
UHGV-0072330_7	UniRef90	UniRef90_UPI00164AF8F0	terminase small subunit	NA
UHGV-0072330_7	eggNOG-mapper	1415774.U728_838	terminase, small subunit	NA
UHGV-0072330_7	Pfam	PF06056	Putative ATPase subunit of terminase (gpP-like)	Terminase_5
UHGV-0072330_7	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0072330_7	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0072330_7	Structural annotation	PF03592, PF10668, NF040601, COG3728	NA	NA
UHGV-0072330_8	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0072330_8	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0072330_8	UniRef90	UniRef90_A0A6L5YJQ3	PBSX family phage terminase large subunit	NA
UHGV-0072330_8	eggNOG-mapper	397290.C810_05187	Phage terminase large subunit	NA
UHGV-0072330_8	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0072330_8	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0072330_8	COG	COG1783	Phage terminase large subunit	NA
UHGV-0072330_8	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0072330_9	PHROG	phrog_533	portal protein	head and packaging
UHGV-0072330_9	UniRef90	UniRef90_A0A1C6CDM8	Phage portal protein, putative, A118 family	NA
UHGV-0072330_9	eggNOG-mapper	33035.JPJF01000106_gene3135	phage minor capsid protein	NA
UHGV-0072330_9	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0072330_11	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0072330_11	UniRef90	UniRef90_UPI000E4A8F9F	minor capsid protein	NA
UHGV-0072330_11	eggNOG-mapper	1449050.JNLE01000003_gene3886	NA	NA
UHGV-0072330_11	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0072330_11	Structural annotation	PF11114	NA	NA
UHGV-0072330_12	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0072330_12	UniRef90	UniRef90_UPI000E4E3D5A	phage capsid protein	NA
UHGV-0072330_12	eggNOG-mapper	642492.Clole_0816	NA	NA
UHGV-0072330_12	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0072330_12	Pfam	PF15542	Bacterial toxin 50	Ntox50
UHGV-0072330_12	COG	COG2369	NA	NA
UHGV-0072330_12	Structural annotation	PF06152, PF15542, TIGR01641	NA	NA
UHGV-0072330_13	Structural annotation	PF07073, MF_00436, NF037951, COG4568	NA	NA
UHGV-0072330_15	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0072330_15	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0072330_15	UniRef90	UniRef90_A0A174ELV3	Anaerobic benzoate catabolism transcriptional regulator	NA
UHGV-0072330_15	eggNOG-mapper	445974.CLORAM_01646	Helix-turn-helix XRE-family like proteins	NA
UHGV-0072330_15	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0072330_15	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0072330_15	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0072330_15	Structural annotation	PF01381, MF_00535, NF010465, COG1476	NA	NA
UHGV-0072330_16	UniRef90	UniRef90_A0A174TAQ5	HTH cro/C1-type domain-containing protein	NA
UHGV-0072330_16	eggNOG-mapper	1304866.K413DRAFT_0802	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0072330_16	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0072330_16	Structural annotation	PF01381, NF000090, COG3655	NA	NA
UHGV-0072330_17	PHROG	phrog_1726	anti-repressor	transcription regulation
UHGV-0072330_17	UniRef90	UniRef90_A0A7X2NKI8	Rha family transcriptional regulator	NA
UHGV-0072330_17	eggNOG-mapper	742738.HMPREF9460_02487	Phage regulatory protein Rha (Phage_pRha)	NA
UHGV-0072330_17	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-0072330_17	NCBIFam	TIGR02681.1	phage regulatory protein, Rha family	NA
UHGV-0072330_17	COG	COG3561	Phage anti-repressor protein Ant	NA
UHGV-0072330_17	Structural annotation	PF09669, TIGR02681, COG3646	NA	NA
UHGV-0072330_20	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0072330_20	UniRef90	UniRef90_UPI000E538A87	phage scaffolding protein	NA
UHGV-0072330_20	eggNOG-mapper	476272.RUMHYD_01775	COG NOG36366 non supervised orthologous group	NA
UHGV-0072330_20	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0072330_21	PHROG	phrog_283	major head protein	head and packaging
UHGV-0072330_21	UniRef90	UniRef90_A0A173REC9	p22 coat protein-gene protein 5	NA
UHGV-0072330_21	eggNOG-mapper	411461.DORFOR_01167	P22 coat protein - gene protein 5	NA
UHGV-0072330_21	Pfam	PF11651	P22 coat protein - gene protein 5	P22_CoatProtein
UHGV-0072330_21	Structural annotation	PF11651, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0072330_22	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0072330_22	eggNOG-mapper	397290.C810_05226	NA	NA
UHGV-0072330_24	PHROG	phrog_3366	NA	unknown function
UHGV-0072330_24	eggNOG-mapper	476272.RUMHYD_01779	NA	NA
UHGV-0072330_24	Structural annotation	PF20536, COG5614	NA	NA
UHGV-0072330_25	PHROG	phrog_3266	tail completion	connector
UHGV-0072330_25	eggNOG-mapper	397290.C810_05232	NA	NA
UHGV-0072330_25	Structural annotation	PF12691	NA	NA
UHGV-0072330_26	PHROG	phrog_3099	NA	unknown function
UHGV-0072330_26	eggNOG-mapper	1235790.C805_00082	NA	NA
UHGV-0072330_26	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0072330_27	PHROG	phrog_11299	NA	unknown function
UHGV-0072330_27	UniRef90	UniRef90_A0A412KF72	RNA polymerase subunit sigma	NA
UHGV-0072330_27	eggNOG-mapper	1120746.CCNL01000014_gene2103	NA	NA
UHGV-0072330_27	Pfam	PF20378	NA	DUF6673
UHGV-0072330_27	Structural annotation	PF10666	NA	NA
UHGV-0072330_28	PHROG	phrog_706	NA	unknown function
UHGV-0072330_28	UniRef90	UniRef90_C7GBZ7	Bacteriophage Gp15 protein	NA
UHGV-0072330_28	eggNOG-mapper	1235790.C805_00084	Bacteriophage Gp15 protein	NA
UHGV-0072330_28	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0072330_28	Structural annotation	PF06854	NA	NA
UHGV-0072330_29	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0072330_29	eggNOG-mapper	1235790.C805_00087	tape measure	NA
UHGV-0072330_29	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0072330_30	PHROG	phrog_1194	NA	unknown function
UHGV-0072330_30	eggNOG-mapper	1235790.C805_00088	NA	NA
UHGV-0072330_30	Pfam	PF20458	NA	DUF6711
UHGV-0072330_30	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0072330_31	PHROG	phrog_18190	NA	unknown function
UHGV-0072330_31	UniRef90	UniRef90_UPI001C01E293	tail fiber domain-containing protein	NA
UHGV-0072330_31	eggNOG-mapper	397290.C810_01435	NA	NA
UHGV-0072330_31	Structural annotation	PF05113, NF033848, COG3500	NA	NA
UHGV-0072330_32	PHROG	phrog_18444	NA	unknown function
UHGV-0072330_32	eggNOG-mapper	931276.Cspa_c07570	NA	NA
UHGV-0072330_33	PHROG	phrog_17196	kinase	other
UHGV-0072330_33	eggNOG-mapper	483218.BACPEC_01141	NA	NA
UHGV-0072330_33	Structural annotation	PF19537, PF13619, COG3536	NA	NA
UHGV-0072330_34	PHROG	phrog_25620	tail collar fiber protein	tail
UHGV-0072330_34	UniRef90	UniRef90_UPI00164A2069	phage tail protein	NA
UHGV-0072330_34	eggNOG-mapper	33035.JPJF01000033_gene2261	tail collar domain protein	NA
UHGV-0072330_34	COG	COG4675	Phage tail collar domain	NA
UHGV-0072330_36	Pfam	PF09693	Phage uncharacterised protein (Phage_XkdX)	Phage_XkdX
UHGV-0072330_36	Structural annotation	PF09693, TIGR01669	NA	NA
UHGV-0072330_37	UniRef90	UniRef90_UPI0013C7D128	hemolysin XhlA family protein	NA
UHGV-0072330_37	eggNOG-mapper	1345695.CLSA_c29710	Haemolysin XhlA	NA
UHGV-0072330_37	Pfam	PF10779	Haemolysin XhlA	XhlA
UHGV-0072330_38	PHROG	phrog_443	holin	lysis
UHGV-0072330_38	UniRef90	UniRef90_UPI000C75746C	holin	NA
UHGV-0072330_38	eggNOG-mapper	1235802.C823_05612	Putative lactococcus lactis phage r1t holin	NA
UHGV-0072330_38	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-0072330_38	Structural annotation	PF16945	NA	NA
UHGV-0072330_39	KOfam	K01185	E3.2.1.17; lysozyme [EC:3.2.1.17]	NA
UHGV-0072330_39	PHROG	phrog_7	endolysin	lysis
UHGV-0072330_39	UniRef90	UniRef90_UPI001F2A030E	lysozyme	NA
UHGV-0072330_39	eggNOG-mapper	397291.C804_01109	Phage lysozyme	NA
UHGV-0072330_39	Pfam	PF00959	Phage lysozyme	Phage_lysozyme
UHGV-0072330_39	COG	COG3584	3D (Asp-Asp-Asp) domain, usually in lytic transglycosylases	NA
UHGV-0072330_39	HAMAP	MF_04110	Endolysin	NA
UHGV-0072330_39	Structural annotation	PF01471, PF00959, MF_04110, COG3772, COG3409	NA	NA
UHGV-0072330_40	eggNOG-mapper	1469948.JPNB01000001_gene783	NA	NA