UHGV-0072398

Genome information

Genome length 25,070 bps

CDS count 45

Completeness 72.50% (medium-quality)

geNomad score 0.9802

Prediction confidence Confident

Genome information
Genome ID	UHGV-0072398
vOTU ID	vOTU-017456
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_107931
BioSample	NA
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	72.50% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9802
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	41.38
Jumbo phage	No

Genome content
Genome length	25,070 bps
GC content	47.80%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	45
CDS density	94.48%
Average CDS length	531.47 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0072398_1	PHROG	phrog_6900	tail length tape measure protein	tail
UHGV-0072398_1	UniRef90	UniRef90_A0A1C6GMQ4	Phage-related protein	NA
UHGV-0072398_1	eggNOG-mapper	411470.RUMGNA_02076	Phage tail tape measure protein, TP901 family	NA
UHGV-0072398_1	COG	COG5283	Phage-related tail protein	NA
UHGV-0072398_2	PHROG	phrog_706	NA	unknown function
UHGV-0072398_2	UniRef90	UniRef90_A0A1C6GMP1	Bacteriophage Gp15 protein	NA
UHGV-0072398_2	eggNOG-mapper	1321782.HMPREF1986_02275	Bacteriophage Gp15 protein	NA
UHGV-0072398_2	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0072398_2	Structural annotation	PF06854	NA	NA
UHGV-0072398_3	Structural annotation	PF10666	NA	NA
UHGV-0072398_4	PHROG	phrog_820	major tail protein	tail
UHGV-0072398_4	UniRef90	UniRef90_A0A174M1L1	S-l_SbsC_C domain-containing protein	NA
UHGV-0072398_4	eggNOG-mapper	663278.Ethha_0099	NA	NA
UHGV-0072398_4	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0072398_5	Structural annotation	PF08873	NA	NA
UHGV-0072398_6	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0072398_6	UniRef90	UniRef90_A0A1C6GMA0	Minor capsid protein	NA
UHGV-0072398_6	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0072398_6	Structural annotation	PF11114	NA	NA
UHGV-0072398_7	PHROG	phrog_793	head-tail adaptor	connector
UHGV-0072398_7	UniRef90	UniRef90_A0A1C6GM46	Minor capsid protein	NA
UHGV-0072398_7	Pfam	PF10665	Minor capsid protein	Minor_capsid_1
UHGV-0072398_7	COG	COG5652	VanZ-like family protein (function unknown)	NA
UHGV-0072398_7	Structural annotation	PF10665, TIGR01563, COG5614	NA	NA
UHGV-0072398_8	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0072398_9	PHROG	phrog_267	major head protein	head and packaging
UHGV-0072398_9	UniRef90	UniRef90_A0A1C6GMA6	S-l_SbsC_C domain-containing protein	NA
UHGV-0072398_9	eggNOG-mapper	718252.FP2_06660	NA	NA
UHGV-0072398_9	Structural annotation	PF05065, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0072398_10	PHROG	phrog_2303	head scaffolding protein	head and packaging
UHGV-0072398_10	eggNOG-mapper	1280692.AUJL01000027_gene2161	NA	NA
UHGV-0072398_10	Structural annotation	PF10788, MF_02110	NA	NA
UHGV-0072398_13	PHROG	phrog_15041	NA	unknown function
UHGV-0072398_13	eggNOG-mapper	478749.BRYFOR_07608	NA	NA
UHGV-0072398_13	Structural annotation	PF10827	NA	NA
UHGV-0072398_14	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0072398_14	UniRef90	UniRef90_A0A1C6FMR4	Phage minor capsid protein 2	NA
UHGV-0072398_14	eggNOG-mapper	428125.CLOLEP_01802	NA	NA
UHGV-0072398_14	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0072398_14	COG	COG2369	NA	NA
UHGV-0072398_14	Structural annotation	PF06152	NA	NA
UHGV-0072398_15	PHROG	phrog_533	portal protein	head and packaging
UHGV-0072398_15	UniRef90	UniRef90_A0A1C6FMT2	Phage portal protein, putative, A118 family	NA
UHGV-0072398_15	eggNOG-mapper	997296.PB1_16244	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0072398_15	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0072398_15	NCBIFam	TIGR01542.1	phage portal protein	NA
UHGV-0072398_15	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0072398_16	PHROG	phrog_9479	NA	unknown function
UHGV-0072398_18	PHROG	phrog_8680	NA	unknown function
UHGV-0072398_18	UniRef90	UniRef90_A0A373V619	NA	NA
UHGV-0072398_18	eggNOG-mapper	411470.RUMGNA_02208	NA	NA
UHGV-0072398_18	Pfam	PF14386	NA	DUF4417
UHGV-0072398_18	Structural annotation	PF14386	NA	NA
UHGV-0072398_19	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0072398_19	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0072398_19	UniRef90	UniRef90_A0A3A6EPV3	PBSX family phage terminase large subunit	NA
UHGV-0072398_19	eggNOG-mapper	642492.Clole_0814	Phage terminase, large subunit, PBSX family	NA
UHGV-0072398_19	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0072398_19	COG	COG1783	Phage terminase large subunit	NA
UHGV-0072398_19	Structural annotation	PF04466, PF20441, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0072398_20	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0072398_20	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0072398_20	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0072398_20	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0072398_21	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0072398_21	UniRef90	UniRef90_UPI0004005A10	NA	NA
UHGV-0072398_21	eggNOG-mapper	1121871.AUAT01000030_gene1019	NA	NA
UHGV-0072398_21	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0072398_21	Structural annotation	PF04545, MF_00674, NF009180, COG1342	NA	NA
UHGV-0072398_23	PHROG	phrog_8684	NA	unknown function
UHGV-0072398_23	UniRef90	UniRef90_A0A1C6FN30	YopX protein	NA
UHGV-0072398_23	eggNOG-mapper	742767.HMPREF9456_03352	YopX protein	NA
UHGV-0072398_23	Pfam	PF09643	YopX protein	YopX
UHGV-0072398_23	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-0072398_23	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0072398_24	eggNOG-mapper	658655.HMPREF0988_00863	NA	NA
UHGV-0072398_26	Structural annotation	PF11483	NA	NA
UHGV-0072398_28	KOfam	K17680	PEO1; twinkle protein [EC:5.6.2.3]	NA
UHGV-0072398_28	PHROG	phrog_239	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UHGV-0072398_28	UniRef90	UniRef90_A0A353J4N2	SF4 helicase domain-containing protein	NA
UHGV-0072398_28	eggNOG-mapper	1256908.HMPREF0373_00663	NA	NA
UHGV-0072398_28	Pfam	PF13481	AAA domain	AAA_25
UHGV-0072398_28	COG	COG0305	Replicative DNA helicase	NA
UHGV-0072398_28	Structural annotation	PF03796, PF19898, MF_04154, TIGR03877, TIGR01391, COG0467, COG0358	NA	NA
UHGV-0072398_29	PHROG	phrog_2514	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0072398_29	eggNOG-mapper	665956.HMPREF1032_02617	Phage replisome organizer, N-terminal domain protein	NA
UHGV-0072398_29	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0072398_29	Structural annotation	PF07106, MF_01177, TIGR01714, COG0640	NA	NA
UHGV-0072398_30	PHROG	phrog_3490	ERCC4-type nuclease	DNA, RNA and nucleotide metabolism
UHGV-0072398_30	UniRef90	UniRef90_UPI000C0868DD	ERCC4 domain-containing protein	NA
UHGV-0072398_30	eggNOG-mapper	476272.RUMHYD_01740	ERCC4 domain	NA
UHGV-0072398_30	Pfam	PF02732	ERCC4 domain	ERCC4
UHGV-0072398_30	COG	COG1948	ERCC4-type crossover junction endonuclease	NA
UHGV-0072398_30	Structural annotation	PF02732, NF040956, COG1948	NA	NA
UHGV-0072398_31	PHROG	phrog_18107	NA	unknown function
UHGV-0072398_31	eggNOG-mapper	476272.RUMHYD_02831	NA	NA
UHGV-0072398_31	Structural annotation	PF05037	NA	NA
UHGV-0072398_32	PHROG	phrog_2872	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0072398_32	UniRef90	UniRef90_A0A1C5SND3	AAA domain-containing protein	NA
UHGV-0072398_32	eggNOG-mapper	1304866.K413DRAFT_0827	AAA domain	NA
UHGV-0072398_32	Pfam	PF13479	AAA domain	AAA_24
UHGV-0072398_32	Structural annotation	PF13479, MF_00350, TIGR01618, COG0468	NA	NA
UHGV-0072398_36	PHROG	phrog_757	DNA methyltransferase	other
UHGV-0072398_36	UniRef90	UniRef90_A0A355YQL4	DNA cytosine methyltransferase	NA
UHGV-0072398_36	eggNOG-mapper	397290.C810_01487	DNA (cytosine-5-)-methyltransferase activity	NA
UHGV-0072398_36	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0072398_36	Structural annotation	PF00145, MF_01872, TIGR00675, COG0270	NA	NA
UHGV-0072398_37	Pfam	PF13384	Homeodomain-like domain	HTH_23
UHGV-0072398_39	Structural annotation	PF10743	NA	NA
UHGV-0072398_43	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0072398_43	UniRef90	UniRef90_H1CAF9	HTH cro/C1-type domain-containing protein	NA
UHGV-0072398_43	eggNOG-mapper	706433.HMPREF9430_01294	Helix-turn-helix XRE-family like proteins	NA
UHGV-0072398_43	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-0072398_43	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0072398_44	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0072398_44	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0072398_44	UniRef90	UniRef90_A0A1Y3TCK7	HTH cro/C1-type domain-containing protein	NA
UHGV-0072398_44	eggNOG-mapper	553973.CLOHYLEM_07297	Transcriptional	NA
UHGV-0072398_44	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0072398_44	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0072398_44	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0072398_44	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0072398_45	eggNOG-mapper	1160721.RBI_I01604	NA	NA
UHGV-0072398_45	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA