UHGV-0072527

Genome information

vOTU vOTU-019892

Genome length 28,740 bps

CDS count 39

Completeness 65.87% (medium-quality)

geNomad score 0.9806

Prediction confidence Confident

Genome information
Genome ID	UHGV-0072527
vOTU ID	vOTU-019892
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_112639
BioSample	NA
Country	Denmark
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	65.87% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	23
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9806
Virus hallmark genes (geNomad)	15
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	38.22
Jumbo phage	No

Genome content
Genome length	28,740 bps
GC content	45.54%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	39
CDS density	88.64%
Average CDS length	656.92 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0072527_1	PHROG	phrog_20274	NA	unknown function
UHGV-0072527_1	UniRef90	UniRef90_A0A1C5TNG1	Predicted membrane protein	NA
UHGV-0072527_1	eggNOG-mapper	411902.CLOBOL_05645	NA	NA
UHGV-0072527_1	COG	COG4905	NA	NA
UHGV-0072527_2	PHROG	phrog_1348	tail fiber protein	tail
UHGV-0072527_2	UniRef90	UniRef90_A0A2N0K3B0	Acyl carrier protein	NA
UHGV-0072527_2	eggNOG-mapper	411902.CLOBOL_05646	NA	NA
UHGV-0072527_2	Structural annotation	PF14301	NA	NA
UHGV-0072527_3	PHROG	phrog_30004	NA	unknown function
UHGV-0072527_3	eggNOG-mapper	411902.CLOBOL_05647	nuclear chromosome segregation	NA
UHGV-0072527_3	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-0072527_3	Structural annotation	PF20829	NA	NA
UHGV-0072527_4	PHROG	phrog_521	tail protein	tail
UHGV-0072527_4	UniRef90	UniRef90_A0A174R4L0	Phage-like element pbsx protein xkdT	NA
UHGV-0072527_4	eggNOG-mapper	610130.Closa_1410	NA	NA
UHGV-0072527_4	Pfam	PF10076	Bacteriophage Mu-like, Gp48	Phage_Mu_Gp48
UHGV-0072527_4	COG	COG3778	NA	NA
UHGV-0072527_4	Structural annotation	PF10076, TIGR01634, COG3778	NA	NA
UHGV-0072527_5	PHROG	phrog_6	baseplate protein	tail
UHGV-0072527_5	UniRef90	UniRef90_A0A6N3EI27	Baseplate J-like protein	NA
UHGV-0072527_5	eggNOG-mapper	610130.Closa_1409	Baseplate J-like protein	NA
UHGV-0072527_5	Pfam	PF04865	Baseplate J-like protein	Baseplate_J
UHGV-0072527_5	COG	COG3299	NA	NA
UHGV-0072527_5	Structural annotation	PF04865, PF21379, MF_04102, TIGR02243, COG3299	NA	NA
UHGV-0072527_6	PHROG	phrog_120	baseplate protein	tail
UHGV-0072527_6	UniRef90	UniRef90_A0A174RCU6	Phage-like element PBSX protein, XkdS	NA
UHGV-0072527_6	eggNOG-mapper	610130.Closa_1408	NA	NA
UHGV-0072527_6	Pfam	PF10934	NA	DUF2634
UHGV-0072527_6	COG	COG3628	Phage baseplate assembly protein W	NA
UHGV-0072527_6	Structural annotation	PF10934, MF_02010, TIGR03357, COG3628	NA	NA
UHGV-0072527_7	UniRef90	UniRef90_A0A413L5A6	DNA helicase	NA
UHGV-0072527_7	eggNOG-mapper	610130.Closa_1407	NA	NA
UHGV-0072527_7	Structural annotation	PF10844, NF003076	NA	NA
UHGV-0072527_8	PHROG	phrog_400	tail protein	tail
UHGV-0072527_8	UniRef90	UniRef90_A0A174R8Z2	NA	NA
UHGV-0072527_8	eggNOG-mapper	610130.Closa_1406	PFAM Phage late control gene D protein (GPD)	NA
UHGV-0072527_8	COG	COG4193	Beta- N-acetylglucosaminidase	NA
UHGV-0072527_8	Structural annotation	PF14594, NF033848, COG3500	NA	NA
UHGV-0072527_9	KOfam	K22409	sle1; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0072527_9	PHROG	phrog_380	endolysin	lysis
UHGV-0072527_9	UniRef90	UniRef90_A0A6N3EUH8	Spore coat assembly protein ExsA	NA
UHGV-0072527_9	eggNOG-mapper	610130.Closa_1405	LysM domain	NA
UHGV-0072527_9	Pfam	PF01476	LysM domain	LysM
UHGV-0072527_9	COG	COG1388	LysM repeat	NA
UHGV-0072527_9	Structural annotation	PF21821, PF05489, TIGR02126, TIGR02899, COG3499, COG1388	NA	NA
UHGV-0072527_10	PHROG	phrog_1068	tail length tape measure protein	tail
UHGV-0072527_10	UniRef90	UniRef90_A0A6N3EMU1	TMP_3 domain-containing protein	NA
UHGV-0072527_10	eggNOG-mapper	610130.Closa_1404	tape measure	NA
UHGV-0072527_10	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0072527_10	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0072527_10	COG	COG5281	Phage-related minor tail protein	NA
UHGV-0072527_10	Structural annotation	PF20155, COG3941	NA	NA
UHGV-0072527_11	PHROG	phrog_389	tail protein XkdN-like	tail
UHGV-0072527_11	UniRef90	UniRef90_UPI00189BF9A0	phage portal protein	NA
UHGV-0072527_11	eggNOG-mapper	1121335.Clst_0400	Phage XkdN-like tail assembly chaperone protein, TAC	NA
UHGV-0072527_11	Pfam	PF08890	Phage XkdN-like tail assembly chaperone protein, TAC	Phage_TAC_5
UHGV-0072527_11	Structural annotation	PF08890, COG4518	NA	NA
UHGV-0072527_12	PHROG	phrog_888	NA	unknown function
UHGV-0072527_12	UniRef90	UniRef90_UPI0012DCC7E7	SHOCT domain-containing protein	NA
UHGV-0072527_12	eggNOG-mapper	1007096.BAGW01000014_gene1146	Short C-terminal domain	NA
UHGV-0072527_12	Pfam	PF09851	Short C-terminal domain	SHOCT
UHGV-0072527_13	UniRef90	UniRef90_UPI0018985742	SHOCT domain-containing protein	NA
UHGV-0072527_14	PHROG	phrog_365	tail protein	tail
UHGV-0072527_14	UniRef90	UniRef90_A0A6N3EUN6	Phage-like element PBSX protein XkdM	NA
UHGV-0072527_14	eggNOG-mapper	610130.Closa_1401	Phage tail tube protein	NA
UHGV-0072527_14	Pfam	PF09393	Phage tail tube protein	DUF2001
UHGV-0072527_14	Structural annotation	PF09393, TIGR02241, COG5437	NA	NA
UHGV-0072527_15	PHROG	phrog_279	tail sheath	tail
UHGV-0072527_15	UniRef90	UniRef90_UPI001C00FFF1	phage tail sheath subtilisin-like domain-containing protein	NA
UHGV-0072527_15	eggNOG-mapper	610130.Closa_1400	Phage tail sheath C-terminal domain	NA
UHGV-0072527_15	Pfam	PF04984	Phage tail sheath protein subtilisin-like domain	Phage_sheath_1
UHGV-0072527_15	Pfam	PF17482	Phage tail sheath C-terminal domain	Phage_sheath_1C
UHGV-0072527_15	Structural annotation	PF17482, PF04984, PF17481, COG4386	NA	NA
UHGV-0072527_16	PHROG	phrog_525	NA	unknown function
UHGV-0072527_16	UniRef90	UniRef90_A0A174IGV6	NA	NA
UHGV-0072527_16	eggNOG-mapper	203119.Cthe_2483	NA	NA
UHGV-0072527_16	Pfam	PF20765	NA	DUF6838
UHGV-0072527_16	Structural annotation	PF20765	NA	NA
UHGV-0072527_17	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0072527_17	UniRef90	UniRef90_UPI00189B3EE0	HK97 gp10 family phage protein	NA
UHGV-0072527_17	eggNOG-mapper	203119.Cthe_2482	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0072527_17	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0072527_17	Structural annotation	PF04883, TIGR01725, COG5005	NA	NA
UHGV-0072527_18	PHROG	phrog_615	head-tail adaptor	connector
UHGV-0072527_18	UniRef90	UniRef90_UPI00164AF442	ABC transporter ATP-binding protein	NA
UHGV-0072527_18	eggNOG-mapper	203119.Cthe_2481	NA	NA
UHGV-0072527_18	Structural annotation	PF12206, COG5614	NA	NA
UHGV-0072527_19	PHROG	phrog_132	head-tail adaptor	connector
UHGV-0072527_19	UniRef90	UniRef90_A0A1E3A379	Phage gp6-like head-tail connector protein	NA
UHGV-0072527_19	eggNOG-mapper	610130.Closa_1396	NA	NA
UHGV-0072527_19	Structural annotation	PF05135	NA	NA
UHGV-0072527_20	PHROG	phrog_247	major head protein	head and packaging
UHGV-0072527_20	UniRef90	UniRef90_D9R921	Phage coat protein	NA
UHGV-0072527_20	eggNOG-mapper	610130.Closa_1395	NA	NA
UHGV-0072527_20	Pfam	PF20036	Major capsid protein 13-like	Gp13-like
UHGV-0072527_20	Structural annotation	PF20036, MF_04113, TIGR04387, COG4834	NA	NA
UHGV-0072527_21	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0072527_21	UniRef90	UniRef90_D9R920	Minor structural GP20 protein	NA
UHGV-0072527_21	eggNOG-mapper	610130.Closa_1394	Phage minor structural protein GP20	NA
UHGV-0072527_21	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0072527_21	Structural annotation	PF06810	NA	NA
UHGV-0072527_22	Structural annotation	PF11305, MF_01360	NA	NA
UHGV-0072527_24	PHROG	phrog_115	minor head protein	head and packaging
UHGV-0072527_24	UniRef90	UniRef90_UPI001898C592	minor capsid protein	NA
UHGV-0072527_24	eggNOG-mapper	203119.Cthe_2476	Phage Mu protein F like protein	NA
UHGV-0072527_24	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0072527_24	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0072527_24	COG	COG2369	NA	NA
UHGV-0072527_24	Structural annotation	PF03496, PF04233, MF_04142, NF041404, TIGR01641, COG2369	NA	NA
UHGV-0072527_25	PHROG	phrog_64	portal protein	head and packaging
UHGV-0072527_25	UniRef90	UniRef90_R0BGN5	SPP1 family phage portal protein	NA
UHGV-0072527_25	eggNOG-mapper	610130.Closa_1391	Phage portal protein, SPP1 family	NA
UHGV-0072527_25	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0072527_25	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0072527_26	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0072527_26	PHROG	phrog_10250	NA	unknown function
UHGV-0072527_26	UniRef90	UniRef90_A0A2N0K779	PBSX family phage terminase large subunit	NA
UHGV-0072527_26	eggNOG-mapper	642492.Clole_2765	Phage terminase, large subunit, PBSX family	NA
UHGV-0072527_26	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0072527_26	Pfam	PF17289	Terminase RNaseH-like domain	Terminase_6C
UHGV-0072527_26	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0072527_26	COG	COG1783	Phage terminase large subunit	NA
UHGV-0072527_26	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0072527_27	PHROG	phrog_1889	terminase small subunit	head and packaging
UHGV-0072527_27	UniRef90	UniRef90_UPI001C01C9EF	phage terminase small subunit	NA
UHGV-0072527_27	eggNOG-mapper	33035.JPJF01000107_gene435	NA	NA
UHGV-0072527_27	Pfam	PF06056	Putative ATPase subunit of terminase (gpP-like)	Terminase_5
UHGV-0072527_27	NCBIFam	NF040601.1	phage terminase small subunit	NA
UHGV-0072527_27	COG	COG5484	NA	NA
UHGV-0072527_27	Structural annotation	PF06056, NF040601, COG5484	NA	NA
UHGV-0072527_28	eggNOG-mapper	658088.HMPREF0987_00662	NA	NA
UHGV-0072527_28	Structural annotation	PF01326, MF_00558, NF002527, COG0026	NA	NA
UHGV-0072527_29	KOfam	K01129	dgt; dGTPase [EC:3.1.5.1]	NA
UHGV-0072527_29	PHROG	phrog_21998	NA	unknown function
UHGV-0072527_29	UniRef90	UniRef90_UPI001D09877B	dNTP triphosphohydrolase	NA
UHGV-0072527_29	eggNOG-mapper	658088.HMPREF0987_00663	HD domain	NA
UHGV-0072527_29	PADLOC	dGTPase	NA	NA
UHGV-0072527_29	Pfam	PF01966	HD domain	HD
UHGV-0072527_29	Pfam	PF13286	Phosphohydrolase-associated domain	HD_assoc
UHGV-0072527_29	NCBIFam	TIGR01353.1	dNTP triphosphohydrolase	NA
UHGV-0072527_29	COG	COG0232	dGTP triphosphohydrolase	NA
UHGV-0072527_29	Structural annotation	PF01966, MF_01212, NF041026, COG0232	NA	NA
UHGV-0072527_31	PHROG	phrog_374	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0072527_31	UniRef90	UniRef90_A0A380IPI2	AP2 domain protein	NA
UHGV-0072527_31	eggNOG-mapper	645991.Sgly_0324	NA	NA
UHGV-0072527_31	Structural annotation	PF18337	NA	NA
UHGV-0072527_32	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0072527_32	UniRef90	UniRef90_UPI001D089637	NA	NA
UHGV-0072527_32	eggNOG-mapper	33035.JPJF01000139_gene3002	NA	NA
UHGV-0072527_32	Structural annotation	PF04545	NA	NA
UHGV-0072527_33	AcrCatalog	cluster_47354	NA	NA
UHGV-0072527_36	PHROG	phrog_757	DNA methyltransferase	other
UHGV-0072527_36	UniRef90	UniRef90_A0A413KZI1	DNA cytosine methyltransferase	NA
UHGV-0072527_36	eggNOG-mapper	742733.HMPREF9469_01835	DNA (cytosine-5-)-methyltransferase activity	NA
UHGV-0072527_36	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0072527_37	PHROG	phrog_15077	NA	unknown function
UHGV-0072527_37	eggNOG-mapper	742740.HMPREF9474_03494	NA	NA
UHGV-0072527_38	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0072527_38	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0072527_38	UniRef90	UniRef90_A0A1C6HJL9	Primosomal protein DnaI	NA
UHGV-0072527_38	eggNOG-mapper	742740.HMPREF9474_03493	IstB-like ATP binding protein	NA
UHGV-0072527_38	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-0072527_38	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0072527_38	Structural annotation	PF01695, MF_00377, NF005992, COG1484	NA	NA
UHGV-0072527_39	PHROG	phrog_244	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0072527_39	eggNOG-mapper	742740.HMPREF9474_03491	NA	NA
UHGV-0072527_39	Structural annotation	PF01870, MF_01490, NF040854, COG1591	NA	NA